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  • MySQL id sequence

    - by Michal Fronczyk
    Is this a correct way for id generation in MySQL ? INSERT INTO Picture (PictureId,First_pick,Title,Description,File_Name,Is_Vertical)VALUES ((SELECT max(pictureid)+1 FROM Picture),0,?,?,?,?) I mean if it is guaranted that PictureId will be unique when this query is run by many threads ? I can't modify table structure. Should I use any specific locks, index or transaction isolation level ? Regards, Michal

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  • pthreads_setaffinity_np: Invalid argument?

    - by hahuang65
    I've managed to get my pthreads program sort of working. Basically I am trying to manually set the affinity of 4 threads such that thread 1 runs on CPU 1, thread 2 runs on CPU 2, thread 3 runs on CPU 3, and thread 4 runs on CPU 4. After compiling, my code works for a few threads but not others (seems like thread 1 never works) but running the same compiled program a couple of different times gives me different results. For example: hao@Gorax:~/Desktop$ ./a.out Thread 3 is running on CPU 3 pthread_setaffinity_np: Invalid argument Thread Thread 2 is running on CPU 2 hao@Gorax:~/Desktop$ ./a.out Thread 2 is running on CPU 2 pthread_setaffinity_np: Invalid argument pthread_setaffinity_np: Invalid argument Thread 3 is running on CPU 3 Thread 3 is running on CPU 3 hao@Gorax:~/Desktop$ ./a.out Thread 2 is running on CPU 2 pthread_setaffinity_np: Invalid argument Thread 4 is running on CPU 4 Thread 4 is running on CPU 4 hao@Gorax:~/Desktop$ ./a.out pthread_setaffinity_np: Invalid argument My question is "Why does this happen? Also, why does the message sometimes print twice?" Here is the code: #define _GNU_SOURCE #include <stdio.h> #include <pthread.h> #include <stdlib.h> #include <sched.h> #include <errno.h> #define handle_error_en(en, msg) \ do { errno = en; perror(msg); exit(EXIT_FAILURE); } while (0) void *thread_function(char *message) { int s, j, number; pthread_t thread; cpu_set_t cpuset; number = (int)message; thread = pthread_self(); CPU_SET(number, &cpuset); s = pthread_setaffinity_np(thread, sizeof(cpu_set_t), &cpuset); if (s != 0) { handle_error_en(s, "pthread_setaffinity_np"); } printf("Thread %d is running on CPU %d\n", number, sched_getcpu()); exit(EXIT_SUCCESS); } int main() { pthread_t thread1, thread2, thread3, thread4; int thread1Num = 1; int thread2Num = 2; int thread3Num = 3; int thread4Num = 4; int thread1Create, thread2Create, thread3Create, thread4Create, i, temp; thread1Create = pthread_create(&thread1, NULL, (void *)thread_function, (char *)thread1Num); thread2Create = pthread_create(&thread2, NULL, (void *)thread_function, (char *)thread2Num); thread3Create = pthread_create(&thread3, NULL, (void *)thread_function, (char *)thread3Num); thread4Create = pthread_create(&thread4, NULL, (void *)thread_function, (char *)thread4Num); pthread_join(thread1, NULL); pthread_join(thread2, NULL); pthread_join(thread3, NULL); pthread_join(thread4, NULL); return 0; }

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  • Update n number of records using JPA with Optimistic locking

    - by Jacques René Mesrine
    I have a table with a column called "count" and I want to run a cron job that will trigger a statement that performs a SQL like this: update summaryTable set count=4; Note that there might be concurrent threads reading & changing the value for "count" when this cron job is triggered. The table has a version column to support Optimistic Locking. What's an efficient way to update the count in JPA ?

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  • How to install python without idle?

    - by jasonz
    I'm using Archlinux and I find I don't need Idle when I'm coding Python. Here is the part of default PKGBUILD file: ./configure --prefix=/usr \ --enable-shared \ --with-threads \ --with-computed-gotos \ --enable-ipv6 \ --with-valgrind \ --with-system-expat \ --with-dbmliborder=gdbm:ndbm \ --with-system-ffi Can I build python without installing Idle? Thanks in advance.

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  • Multithreading or task parallel library

    - by Bruce Adams
    I have an application which performs 30 independent tasks simultaneously using multithreading, each task retrieves data over http, performs a calculation and returns a result to the ui thread. Can I use tpl to perform the same tasks? Does tpl create 30 new threads and spread them over all the available cores, or does it just split the tasks over the available cores and use one thread per core? Will there be a performance boost using tpl over multithreading in this case?

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  • No memory window in Visual Studio 2010

    - by Fredrik Jansson
    I have VS2010 Premium RTM version on Windows 7 Ultimate x64. In the documentation they refer to the Memory 1-4 windows, supposedly under Debug-Windows-Memory. I have "Enable address-level debugging" enabled in VS (Options-Debugging). The problem is that I have no Memory menu item under Debug-Windows during debug of a c++ program. Under Debug-Windows I have only: Breakpoints Parallel Tasks Parallel Stacks Watch - Locals Call Stack Threads Have anyone else experienced this (and hopefully solved it)?

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  • How can I run Devel::Cover under mod_perl2?

    - by codeholic
    Unfortunately, Devel::Cover does not yet work with threads. It doesn't work with prefork either. Being use'd in startup.pl, Devel::Cover issues Not a CODE reference. END failed--call queue aborted. perl 5.8.9, Apache 2.2.13. My OS is FreeBSD, if that matters. The same problem is reported for win32.

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  • Online Flowchart Diagram Tool (run from private wiki)

    - by red.october
    Hi, Is there some flowchart diagram tool that would (or could be made to) integrate with a self-hosted wiki? Requirements: basic functionality (e.g., drawing some boxes and some arrows) would strongly prefer it to be visual (i.e., not written out in text that then gets converted) it is important that it can be integrated into the wiki (e.g., as an extra panel somewhere) can be run from a personal server free I've looked around at other threads here concerning a diagram tool, but they are either desktop applications, online ones which reside on third-party servers, or cost money.

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  • How is spin lock implemented under the hood?

    - by httpinterpret
    This is a lock that can be held by only one thread of execution at a time. An attempt to acquire the lock by another thread of execution makes the latter loop until the lock is released. How does it handle the case when two threads try to acquire the lock exactly the same time? I think this question also applies to various of other mutex implementation.

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  • How to achieve syncronization in loadbalanced multiserver environment

    - by Anoop
    Hi, I have to create a .net web application which would run on more than one front end server which are load balanced. Now I have to use some third party api which is not thread safe so only one thread should call the API at a time so I have to some use syncronization machanism like lock or mutex which provide syncronisation within the process and across the process in machine.Now will lock or mutex work in loadbalanced multiserver environment correctly? If not then is there any mechanism using which I can syncronise all the threads in all the machines??

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  • Task Manager: CPU usage history

    - by Nezdet
    I bougth recently a server with 2 x X5550, they are quad (4 cores each) total 8 cores If I check the task manager it shows in the CPU usage history 16 diagrams, Should't it be 8 cause I have 2 processors with quad? or the diagrams maybee shows the Threads of the CPU?

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  • FIFO semaphore test

    - by L4N0
    Hello everyone, I have implemented FIFO semaphores but now I need a way to test/prove that they are working properly. A simple test would be to create some threads that try to wait on a semaphore and then print a message with a number and if the numbers are in order it should be FIFO, but this is not good enough to prove it because that order could have occurred by chance. Thus, I need a better way of testing it. If necessary locks or condition variables can be used too. Thanks

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  • debugging JBoss 100% CPU usage

    - by NateS
    Originally posted on Server Fault, where it was suggested this question might better asked here. We are using JBoss to run two of our WARs. One is our web app, the other is our web service. The web app accesses a database on another machine and makes requests to the web service. The web service makes JMS requests to other machines, aggregates the data, and returns it. At our biggest client, about once a month the JBoss Java process takes 100% of all CPUs. The machine running JBoss has 8 CPUs. Our web app is still accessible during this time, however pages take about 3 minutes to load. Restarting JBoss restores everything to normal. The database machine and all the other machines are fine, only the machine running JBoss is affected. Memory usage is normal. Network utilization is normal. There are no suspect error messages in the JBoss logs. I have set up a test environment as close as possible to the client's production environment and I've done load testing with as much as 2x the number of concurrent users. I have not gotten my test environment to replicate the problem. Where do we go from here? How can we narrow down the problem? Currently the only plan we have is to wait until the problem occurs in production on its own, then do some debugging to determine the cause. So far people have just restarted JBoss when the problem occurred to minimize down time. Next time it happens they will get a developer to take a look. The question is, next time it happens, what can be done to determine the cause? We could setup a separate JBoss instance on the same box and install the web app separately from the web service. This way when the problem next occurs we will know which WAR has the problem (assuming it is our code). This doesn't narrow it down much though. Should I enable JMX remote? This way the next time the problem occurs I can connect with VisualVM and see which threads are taking the CPU and what the hell they are doing. However, is there a significant down side to enabling JMX remote in a production environment? Is there another way to see what threads are eating the CPU and to get a stacktrace to see what they are doing? Any other ideas? Thanks!

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  • System architecture: simple approach for setting up background tasks behind a web application -- wil

    - by Tim Molendijk
    I have a Django web application and I have some tasks that should operate (or actually: be initiated) on the background. The application is deployed as follows: apache2-mpm-worker; mod_wsgi in daemon mode (1 process, 15 threads). The background tasks have the following characteristics: they need to operate in a regular interval (every 5 minutes or so); they require the application context (i.e. the application packages need to be available in memory); they do not need any input other than database access, in order to perform some not-so-heavy tasks such as sending out e-mail and updating the state of the database. Now I was thinking that the most simple approach to this problem would be simply to piggyback on the existing application process (as spawned by mod_wsgi). By implementing the task as part of the application and providing an HTTP interface for it, I would prevent the overhead of another process that is holding all of the application into memory. A simple cronjob can be setup that sends a request to this HTTP interface every 5 minutes and that would be it. Since the application process provides 15 threads and the tasks are quite lightweight and only running every 5 minutes, I figure they would not be hindering the performance of the web application's user-facing operations. Yet... I have done some online research and I have seen nobody advocating this approach. Many articles suggest a significantly more complex approach based on a full-blown messaging component (such as Celery, which uses RabbitMQ). Although that's sexy, it sounds like overkill to me. Some articles suggest setting up a cronjob that executes a script which performs the tasks. But that doesn't feel very attractive either, as it results in creating a new process that loads the entire application into memory, performs some tiny task, and destroys the process again. And this is repeated every 5 minutes. Does not sound like an elegant solution. So, I'm looking for some feedback on my suggested approach as described in the paragraph before the preceeding paragraph. Is my reasoning correct? Am I overlooking (potential) problems? What about my assumption that application's performance will not be impeded?

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  • Is RegSetValueEx thread safe?

    - by Brent Newbury
    I suspect that RegSetValueEx is thread safe, but would like some confirmation from the community. If called from multiple threads, will there be any side effects? The RegSetValueEx MSDN documentation doesn't mention thread safety at all.

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  • GCD and AppleEvents / NSOperationQueue and AppleScript

    - by mahal tertin
    As i understood, the threads provided by GCD do have a runloop but no source/port. Now i use some of methods that call AppleScripts thru AppleEvents inside an NSOperationQueue. And sometimes my app crashes with following stacktrace. my questions: Usage of AppleScript inside a NSInvocationOperation or NSBlockOperation Usage of AppleEvents inside GCD-Threads do i have to add a source / port to a runloop of a gcd-thread before using AppleEvents? do i have to add a source / port to a runloop of a gcd-thread before using [CATransaction commit]? do i have to add a source / port to a runloop of a gcd-thread before using [NSObject performSelectorAfterDelay...] ? if yes, how? can i simply call CFRunLoopRunInMode(kCFRunLoopDefaultMode, 5.0, false); /// or 30 or the defined timeout of appleevent? .. Thread 9: Dispatch queue: com.apple.root.default-priority 0 libSystem.B.dylib 0x00007fff88276e82 semaphore_wait_signal_trap 10 1 libSystem.B.dylib 0x00007fff8827c3cd pthread_mutex_lock 469 2 com.apple.applescript 0x000000011d3d461f AppleScriptComponent 50 3 com.apple.applescript 0x000000011d3edbcc AGenericCall::Delegate(ComponentInstanceRecord*) 46 4 com.apple.applescript 0x000000011d3ed520 AGenericManager::HandleOSACall(ComponentParameters*) 54 5 com.apple.applescript 0x000000011d3ed4b0 GenericComponent 219 6 com.apple.openscripting 0x00007fff8381c6da OSAExecuteEvent 63 7 com.apple.Foundation 0x00007fff86f320d8 -[NSAppleScript(NSPrivate) _executeAppleEvent:withMode:error:] 161 8 xxx 0x0000000100048af0 -[TCallScript callScript:withArrayOfParameters:] 480 9 xxx 0x0000000100048ffd -[TCallScript callHandler:withParameters:] 477 10 xxx 0x0000000100036032 -[ZFOpenWindowController getSafariItemForCurrentTabForWindow:] 66 11 xxx 0x00000001000346af -[ZFOpenWindowController refreshWindowList:] 1679 12 xxx 0x000000010003541c -[ZFOpenWindowController bringZFToForegroundZoomOut:orJustLinkFrontMost:toItem:] 2988 13 xxx 0x0000000100053556 __-[ZFSelectionTool openWithPreferredApplication:]_block_invoke_516 54 14 com.apple.Foundation 0x00007fff86ed87d9 -[NSBlockOperation main] 140 15 com.apple.Foundation 0x00007fff86ec906d -[__NSOperationInternal start] 681 16 com.apple.Foundation 0x00007fff86ec8d23 ____startOperations_block_invoke_2 99 17 libSystem.B.dylib 0x00007fff882b2ce8 _dispatch_call_block_and_release 15 18 libSystem.B.dylib 0x00007fff88291279 _dispatch_worker_thread2 231 19 libSystem.B.dylib 0x00007fff88290bb8 _pthread_wqthread 353 20 libSystem.B.dylib 0x00007fff88290a55 start_wqthread 13 ... Thread 11 Crashed: Dispatch queue: com.apple.root.default-priority 0 com.apple.applescript 0x000000011d40f658 BCHandleError() 182 1 com.apple.applescript 0x000000011d4059ca UASExecute1() 2546 2 com.apple.applescript 0x000000011d3dd1d5 ASExecuteEvent(AEDesc const*, unsigned int, int, unsigned int*) 695 3 ...ple.CoreServices.CarbonCore 0x00007fff85388e04 CallComponentFunction 28 4 com.apple.applescript 0x000000011d3d4cad AppleScriptComponent 1728 5 com.apple.applescript 0x000000011d3edbcc AGenericCall::Delegate(ComponentInstanceRecord*) 46 6 com.apple.applescript 0x000000011d3ed520 AGenericManager::HandleOSACall(ComponentParameters*) 54 7 com.apple.applescript 0x000000011d3ed4b0 GenericComponent 219 8 com.apple.openscripting 0x00007fff8381c6da OSAExecuteEvent 63 9 com.apple.Foundation 0x00007fff86f320d8 -[NSAppleScript(NSPrivate) _executeAppleEvent:withMode:error:] 161 10 xxx 0x0000000100048af0 -[TCallScript callScript:withArrayOfParameters:] 480 11 xxx 0x0000000100048ffd -[TCallScript callHandler:withParameters:] 477 12 xxx 0x0000000100035c67 -[ZFOpenWindowController getItemForAXDocumentOfFrontMostWindow] 119 13 xxx 0x00000001000359f1 -[ZFOpenWindowController getItemForFrontMostWindow:] 721 14 xxx 0x00000001000348ac -[ZFOpenWindowController bringZFToForegroundZoomOut:orJustLinkFrontMost:toItem:] 60 15 xxx 0x0000000100053556 __-[ZFSelectionTool openWithPreferredApplication:]_block_invoke_516 54 16 com.apple.Foundation 0x00007fff86ed87d9 -[NSBlockOperation main] 140 17 com.apple.Foundation 0x00007fff86ec906d -[__NSOperationInternal start] 681 18 com.apple.Foundation 0x00007fff86ec8d23 ____startOperations_block_invoke_2 99 19 libSystem.B.dylib 0x00007fff882b2ce8 _dispatch_call_block_and_release 15 20 libSystem.B.dylib 0x00007fff88291279 _dispatch_worker_thread2 231 21 libSystem.B.dylib 0x00007fff88290bb8 _pthread_wqthread 353 22 libSystem.B.dylib 0x00007fff88290a55 start_wqthread 13

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  • Ruby Rss parser and event trigger

    - by fenec
    I'm using RSS library so i can parse Atom and RSS in Ruby and Rails and store it in a model. I've looked at the standard RSS library, but is there one library that will auto-detect that there is a new rss feed so i can update my database ? what are the best practice to trigger an instruction in order to store the new rss feed ? should i use threads to handle that problem ?is it going to be slow? thank you for your help

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  • ThreadPooler in Spring 2.5.6

    - by MiKu
    My application uses Spring 2.5.6. I have a service that creates explicit threads for some specific task. Triggering of this service call happens through quartz time scheduler. Question : While executing service calls, i want to use some sort of thread pooler that can return me thread instances. Is there any implementations that i can use in Spring?

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  • Is there a POSIX syscall to resolve file system paths?

    - by Mike
    Is there a POSIX syscall to resolve filesystem paths? I have the CWD for a path, as well as the path to a file from that CWD. I can't use chdir to switch to the directory because I need to resolve paths from multiple threads simultaneously. I considered appending a / in between the CWD and the path, but for some reason it feels like that's hacky. Is that the proper way to resolve relative paths?

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  • C++ Multithreading with pthread is blocking (including sockets)

    - by Sebastian Büttner
    I am trying to implement a multi threaded application with pthread. I did implement a thread class which looks like the following and I call it later twice (or even more), but it seems to block instead of execute the threads parallel. Here is what I got until now: The Thread Class is an abstract class which has the abstract method "exec" which should contain the thread code in a derive class (I did a sample of this, named DerivedThread) Thread.hpp #ifndef THREAD_H_ #define THREAD_H_ #include <pthread.h> class Thread { public: Thread(); void start(); void join(); virtual int exec() = 0; int exit_code(); private: static void* thread_router(void* arg); void exec_thread(); pthread_t pth_; int code_; }; #endif /* THREAD_H_ */ And Thread.cpp #include <iostream> #include "Thread.hpp" /*****************************/ using namespace std; Thread::Thread(): code_(0) { cout << "[Thread] Init" << endl; } void Thread::start() { cout << "[Thread] Created Thread" << endl; pthread_create( &pth_, NULL, Thread::thread_router, reinterpret_cast<void*>(this)); } void Thread::join() { cout << "[Thread] Join Thread" << endl; pthread_join(pth_, NULL); } int Thread::exit_code() { return code_; } void Thread::exec_thread() { cout << "[Thread] Execute" << endl; code_ = exec(); } void* Thread::thread_router(void* arg) { cout << "[Thread] exec_thread function in thread" << endl; reinterpret_cast<Thread*>(arg)->exec_thread(); return NULL; } DerivedThread.hpp #include "Thread.hpp" class DerivedThread : public Thread { public: DerivedThread(); virtual ~DerivedThread(); int exec(); void Close() = 0; DerivedThread.cpp [...] #include "DerivedThread.cpp" [...] int DerivedThread::exec() { //code to be executed do { cout << "Thread executed" << endl; usleep(1000000); } while (true); //dummy, just to let it run for a while } [...] Basically, I am calling this like the here: DerivedThread *thread; cout << "Creating Thread" << endl; thread = new DerivedThread(); cout << "Created thread, starting..." << endl; thread->start(); cout << "Started thread" << endl; cout << "Creating 2nd Thread" << endl; thread = new DerivedThread(); cout << "Created 2nd thread, starting..." << endl; thread->start(); cout << "Started 2nd thread" << endl; What is working great if I am only starting one of these Threads , but if I start multiple which should run together (not synced, only parallel) . But I discovered, that the thread is created, then as it tries to execute it (via start) the problem seems to block until the thread has closed. After that the next Thread is processed. I thought that pthread would do it unblocked for me, so what did I wrong? A sample output might be: Creating Thread [Thread] Thread Init Created thread, starting... [Thread] Created thread [Thread] exec_thread function in thread [Thread] Execute Thread executed Thread executed Thread executed Thread executed Thread executed Thread executed Thread executed .... Until Thread 1 is not terminated, a Thread 2 won't be created not executed. The process above is executed in an other class. Just for the information: I am trying to create a multi threaded server. The concept is like this: MultiThreadedServer Class has a main loop, like this one: ::inet::ServerSock *sock; //just a simple self made wrapper class for sockets DerivedThread *thread; for (;;) { sock = new ::inet::ServerSock(); this->Socket->accept( *sock ); cout << "Creating Thread" << endl; //Threads (according to code sample above) thread = new DerivedThread(sock); //I did not mentoine the parameter before as it was not neccesary, in fact, I pass the socket handle with the connected socket to the thread cout << "Created thread, starting..." << endl; thread->start(); cout << "Started thread" << endl; } So I thought that this would loop over and over and wait for new connections to accept. and when a new client arrives, I am creating a new thread and give the thread the connected socket as a parameter. In the DerivedThread::exec I am doing the handling for the connected client. Like: [...] do { [...] if (this-sock_-read( Buffer, sizeof(PacketStruc) ) 0) { cout << "[Handler_Base] Recv Packet" << endl; //handle the packet } else { Connected = false; } delete Buffer; } while ( Connected ); So I loop in the created thread as long as the client keeps the connection. I think, that the socket may cause the blocking behaviour. Edit: I figured out, that it is not the read() loop in the DerivedThread Class as I simply replaced it with a loop over a simple cout-usleep part. It did also only execute the first one and after first thread finished, the 2nd one was executed. Many thanks and best regards, Sebastian

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  • Aspect oriented Programming?

    - by Jaswant Agarwal
    How can we apply attributes to class fucntion using AOP in C#? UPDATE: I am slightly not clear in what context AOP should be used? As we can use AOP for logging purpose, security(Authentication), please suggest some other scenarios where we can take benefit of AOP Is AOP can be use to share data among different running threads in application process?

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  • If I'm updating a DataRow, do I lock the entire DataTable or just the DataRow?

    - by Dan Tao
    Suppose I'm accessing a DataTable from multiple threads. If I want to access a particular row, I suspect I need to lock that operation (I could be mistaken about this, but at least I know this way I'm safe): // this is a strongly-typed table OrdersRow row = null; lock (orderTable.Rows.SyncRoot) { row = orderTable.FindByOrderId(myOrderId); } But then, if I want to update that row, should I lock the table (or rather, the table's Rows.SyncRoot object) again, or can I simply lock the row?

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  • crash in calloc

    - by mmd
    I'm trying to debug a program I wrote. I ran it inside gdb and I managed to catch a SIGABRT from inside calloc(). I'm completely confused about how this can arise. Can it be a bug in gcc or even libc?? More details: My program uses OpenMP. I ran it through valgrind in single-threaded mode with no errors. I also use mmap() to load a 40GB file, but I doubt that is relevant. Inside gdb, I'm running with 30 threads. Several identical runs (same input&CL) finished correctly, until the problematic one that I caught. On the surface this suggests there might be a race condition of some type. However, the SIGABRT comes from calloc() which is out of my control. Here is some relevant gdb output: (gdb) info threads [...] * 11 Thread 0x7ffff0056700 (LWP 73449) 0x00007ffff6a948a5 in raise () from /lib64/libc.so.6 [...] (gdb) thread 11 [Switching to thread 11 (Thread 0x7ffff0056700 (LWP 73449))]#0 0x00007ffff6a948a5 in raise () from /lib64/libc.so.6 (gdb) bt #0 0x00007ffff6a948a5 in raise () from /lib64/libc.so.6 #1 0x00007ffff6a96085 in abort () from /lib64/libc.so.6 #2 0x00007ffff6ad1fe7 in __libc_message () from /lib64/libc.so.6 #3 0x00007ffff6ad7916 in malloc_printerr () from /lib64/libc.so.6 #4 0x00007ffff6adb79f in _int_malloc () from /lib64/libc.so.6 #5 0x00007ffff6adbdd6 in calloc () from /lib64/libc.so.6 #6 0x000000000040e87f in my_calloc (re=0x7fff2867ef10, st=0, options=0x632020) at gmapper/../gmapper/../common/my-alloc.h:286 #7 read_get_hit_list_per_strand (re=0x7fff2867ef10, st=0, options=0x632020) at gmapper/mapping.c:1046 #8 0x000000000041308a in read_get_hit_list (re=<value optimized out>, options=0x632010, n_options=1) at gmapper/mapping.c:1239 #9 handle_read (re=<value optimized out>, options=0x632010, n_options=1) at gmapper/mapping.c:1806 #10 0x0000000000404f35 in launch_scan_threads (.omp_data_i=<value optimized out>) at gmapper/gmapper.c:557 #11 0x00007ffff7230502 in ?? () from /usr/lib64/libgomp.so.1 #12 0x00007ffff6dfc851 in start_thread () from /lib64/libpthread.so.0 #13 0x00007ffff6b4a11d in clone () from /lib64/libc.so.6 (gdb) f 6 #6 0x000000000040e87f in my_calloc (re=0x7fff2867ef10, st=0, options=0x632020) at gmapper/../gmapper/../common/my-alloc.h:286 286 res = calloc(size, 1); (gdb) p size $2 = 814080 (gdb) The function my_calloc() is just a wrapper, but the problem is not in there, as the real calloc() call looks legit. These are the limits set in the shell: $ ulimit -a core file size (blocks, -c) 0 data seg size (kbytes, -d) unlimited scheduling priority (-e) 0 file size (blocks, -f) unlimited pending signals (-i) 2067285 max locked memory (kbytes, -l) 64 max memory size (kbytes, -m) unlimited open files (-n) 1024 pipe size (512 bytes, -p) 8 POSIX message queues (bytes, -q) 819200 real-time priority (-r) 0 stack size (kbytes, -s) 10240 cpu time (seconds, -t) unlimited max user processes (-u) 1024 virtual memory (kbytes, -v) unlimited file locks (-x) unlimited The program is not out of memory, it's using 41GB on a machine with 256GB available: $ top -b -n 1 | grep gmapper 73437 user 20 0 41.5g 16g 15g T 0.0 6.6 55:17.24 gmapper-ls $ free -m total used free shared buffers cached Mem: 258437 195567 62869 0 82 189677 -/+ buffers/cache: 5807 252629 Swap: 0 0 0 I compiled using gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4), with flags -g -O2 -DNDEBUG -mmmx -msse -msse2 -fopenmp -Wall -Wno-deprecated -D__STDC_FORMAT_MACROS -D__STDC_LIMIT_MACROS.

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