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  • How should we serve files in a small bioinformatics cluster?

    - by cespinoza
    We have a small cluster of six ubuntu servers. We run bioinformatics analyses on these clusters. Each analysis takes about 24 hours to complete, each core i7 server can handle 2 at a time, takes as input about 5GB data and outputs about 10-25GB of data. We run dozens of these a week. The software is a hodgepodge of custom perl scripts and 3rd party sequence alignment software written in C/C++. Currently, files are served from two of the compute nodes (yes, we're using compute nodes as file servers)-- each node has 5 1TB sata drives mounted separately (no raid) and is pooled via glusterfs 2.0.1. They each have as 3 bonded intel ethernet pci gigabit ethernet cards, attached to a d-link DGS-1224T switch ($300 24 port consumer-level). We are not currently using jumbo frames (not sure why, actually). The two file-serving compute nodes are then mirrored via glusterfs. Each of the four other nodes mounts the files via glusterfs. The files are all large (4gb+), and are stored as bare files (no database/etc) if that matters. As you can imagine, this is a bit of a mess that grew organically without forethought and we want to improve it now that we're running out of space. Our analyses are I/O intensive and it is a bottle neck-- we're only getting 140mB/sec between the two fileservers, maybe 50mb/sec from the clients (which only have single NICs). We have a flexible budget which I can probably get up $5k or so. How should we spend our budget? We need at least 10TB of storage fast enough to serve all nodes. How fast/big does the cpu/memory of such a file server have to be? Should we use NFS, ATA over Ethernet, iSCSI, Glusterfs, or something else? Should we buy two or more servers and create some sort of storage cluster, or is 1 server enough for such a small number of nodes? Should we invest in faster NICs (say, PCI-express cards with multiple connectors)? The switch? Should we use raid, if so, hardware or software? and which raid (5, 6, 10, etc)? Any ideas appreciated. We're biologists, not IT gurus.

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  • Updating Applications in a Corporate Environment

    - by user145133
    I am very new to this subject and was hoping someone could shed some light on it. I am working on creating a corporate network that will obviously have multiple servers and multiple workstations. Let's say a new version of Adobe Flash comes out. I would think that you would want to test this update in a test environment before "pushing it out" to the servers and workstations. How do you guys go about controlling, testing and then pushing the application updates out? (i am not talking about windows updates). Do you use a 3rd party sysadmin tool? Home grown software? Any info will greatly be appreciated :)

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  • crontab still sending emails even with > /dev/null

    - by user2344668
    I have a crontab (root) that runs a script and output is set to /dev/null but I always get the emails whenever it runs. I only want to receive error emails. # Rackspace driveclient update (12pm MST) 0 12 * * * /root/scripts/driveclient-update > /dev/null The only way I can get it to turn off is to use /dev/null 2&1 but then I won't get error emails. This is happening on three different CentOS servers, two are 6.3 and one is 6.4. NOTE: I have read over and over that /dev/null is supposed to send stdout there and prevent the email if there is nothing but stdout from the script, so at works for at least some people; I cannot figure out why it is not working on these servers. Here's an example of where /dev/null is supposed to work: http://www.alphadevx.com/a/384-Suppressing-Cron-Job-Email-Notifications

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  • Hyper-V and host-installed hardware devices: can guest VMs access?

    - by gravyface
    Have a couple of servers I'd like to setup as Hyper-V Servers, with a couple of Windows 2008 Standard VMs. On the host, we have a few hardware devices we'd like to be accessible to the guest; I'm not sure if these are supported via a raw "pass-thru" on Hyper-V (which I don't have alot of experience with) if the same drivers are installed on the guest. Hardware in question is a Brooktrout fax card, a SCSI adapter for the tape drive, and a 9-pin serial connected to one of the core firewalls for management.

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  • MS Clear Screen Saver doesn't work

    - by ufoq
    I have a problem with really exotic thing - Microsoft Clear Screen Saver. As it's name suggests, it's a screen saver, that's transparent (MS posted it as a part of W2k Resource Kit). When you move the mouse/hit a key, the "lock" dialog appears. I would like to use this to view servers desktops without need to log in. I tested it on my XP's, and it works flawlessy. But on W2K3 servers it doesn't work. After the screensaver timeout, the error message is displayed: "The Clear Screen Saver cannot display the user desktop after the workstation has been locked"

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  • How does an NTP host switch among the various modes?

    - by James A. Rosen
    The NTPv3 RFC describes five operating modes: Symmetric Active (1): A host operating in this mode sends periodic messages regardless of the reachability state or stratum of its peer. By operating in this mode the host announces its willingness to synchronize and be synchronized by the peer. Symmetric Passive (2): This type of association is ordinarily created upon arrival of a message from a peer operating in the symmetric active mode and persists only as long as the peer is reachable and operating at a stratum level less than or equal to the host; otherwise, the association is dissolved. However, the association will always persist until at least one message has been sent in reply. By operating in this mode the host announces its willingness to synchronize and be synchronized by the peer. Client (3): A host operating in this mode sends periodic messages regardless of the reachability state or stratum of its peer. By operating in this mode the host, usually a LAN workstation, announces its willingness to be synchronized by, but not to synchronize the peer. Server (4): This type of association is ordinarily created upon arrival of a client request message and exists only in order to reply to that request, after which the association is dissolved. By operating in this mode the host, usually a LAN time server, announces its willingness to synchronize, but not to be synchronized by the peer. Broadcast (5): A host operating in this mode sends periodic messages regardless of the reachability state or stratum of the peers. By operating in this mode the host, usually a LAN time server operating on a high-speed broadcast medium, announces its willingness to synchronize all of the peers, but not to be synchronized by any of them. It seems to me, though, that any host except a leaf node would probably be in several modes. For example, I might have a local area network with three NTP servers, each in Symmetric Active (1) mode with respect to one another. They would also each be clients (3) of one of the many public stratum two time servers. Lastly, they would all server as servers (4) to the many local clients. Is the point that they're only in a given mode for a moment during the synchronization? If so, how does a host know to switch? I'm only looking for enough depth here to discuss the issue in an educated manner, not to write a custom time server.

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  • spurious hardware memory 'errors' on hp dl380 g5's being generated

    - by friedchicken
    Hi All, i've got 2 new HP dl380g5 servers running HP's esxi4 patched to 219382. they have both been patched up to the latest hp firmware levels (firmware cd 8.7) both are running 32gb (4 x 8gb sticks) both servers are showing the same symptoms - the memory lights come on for two (random) dimms on the front of the server and the health led turns red. sometimes the server stays up and running with no problems. othertimes the server locks dead and only a power reset can bring it back. there is nothing showing in the ilo logs and nothing within the vmware hardware monitoring. the memory has been replaced i've got other customers that have been running dl380g5's with out any issues on esx3.5 - this is our first vsphere deployment with them. these are meant to go live soon so any advice would be great. thanks in advance.

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  • Linux server failover

    - by Lukasz
    I have two Linux servers (CentOS6) - both are identically configured connected to the same switch with a direct link between them. I only have one external IP that is assigned to eth0 on both servers (connected to the internet switch) with the interface shutdown on server 2. How can I failover to server 2 if server 1 dies - as stated they are linked directly so they can check for availability of each other via ping/tcp/udp. I toyed with Heartbeat but the documentation seems to be non-existent - not sure how to bring up an interface and start some services if the other server dies.

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  • Rsync to take the newest file. And a cron job?

    - by user1704877
    I have a log file on two different servers. The servers are under a load balancer so half the traffic goes to one server, and half the traffic goes to the other server. I need to take the newest log file from one machine and transfer that log file to the other machine. So if one log file is changed on one server, it gets updated on the other server. I think I need to use rsync. And do I also need to put it in a cron job?

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  • Proxying/Tunneling IPSec traffic via netcat or SOCKS?

    - by MattC
    I have a client that is using a SonicWall router as their VPN concentrator. I downloaded the client software and set up the router as a peer. My issue is that my company uses a dual DMZ setup, meaning we have an interior firewall, then a bunch of DMZ servers, then an external firewall, then finally the telco router. In this setup, the interior firewall has no way to communicate with the exterior firewall since they are on two totally separate subnets. The communication occurs through the servers that straddle the networks. In this case, I need some way to forward the ISAKMP/IPSec traffic from my desktop out to the Internet. My usual trick of using netcat on the intermediate proxy server doesn't work here since it's not TCP/UDP traffic as far as I can tell. All of my previous experience with VPN's have been using SSL-based VPN's which are clearly very easily proxy-able. Any help would be appreciated, thanks!

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  • What do you do with a 15 node decommissioned Itanium cluster?

    - by Gomibushi
    We are decommissioning a 15 node Itanium cluster. We don't know what to do with it. Being geeks we want to put it (or its individual nodes) to some cool use, but since it is Itanium we are a bit unsure what that could/would be. We are not bringing it back as production servers and we are considering giving them away, if anyone wants them. It's not the most spiffy hardware, but being 2U rack servers they pack an ok amount of cpu and memory, they're about 3 years old perhaps. Ideas to what runs well on them? Or something one can use them as?

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  • Advice for an EC2 Architecture and Deployment Strategy

    - by Mark
    My company is currently migrating several websites and PHP web applications (standard LAMP stack) from three in-house servers to Amazon EC2. Because we had only three servers, we clustered several low-traffic websites with perhaps one high-traffic web application, and served them from the same server. The server admin has pretty much copied the previous architecture wholesale onto the EC2 instances, simply upping the instance size to account for the highest traffic client that occupies that particular instance. This architecture might be okay if it wasn't for deployment. Any time one of these sites/apps changes, it means redeploying the entire instance, along with the 30 sites/apps it hosts, instead of just updating one. How can we architect our cloud in a more modular fashion? Should each app get its own appropriately-sized instance? What is the best strategy for deployment in this type of situation?

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  • What is the "real" difference between a NAS and NFS?

    - by warren
    From an end-user perspective, what is the difference between a NAS device and using NFS exports from a file server? They seem to accomplish the same end result. The difference between a SAN and other file storage is related (in my experience) to how they are connected to the server infrastructure. However, the difference between a NAS, connecting over standard ethernet, and NFS (sharing storage off specific servers, also over the network), seems more nebulous. Is there a good reason to pick a NAS filer over NFS on servers?

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  • How much does a IPtables router slow down a connection?

    - by RayQuang
    Hi, I would like to know if introducing a new gateway in my network will slow things down. The question may sound unclear but here is an illustration: Before Installing gateway server Main Router <=> switches <=> servers after installing gateway Server Main Router <=> IPtables router <=> switches <=> servers My question is. How much will this delay incoming outgoing requests / file transfers. thanks, RayQuang

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  • Eliminate single point of failure for webservers?

    - by George Bailey
    I know in DNS, that each of the DNS servers will be tried to see if they will respond I know in email that in the event of a failure it will go to the next one in the list or it will hold the mail for a period of time As far as I know,, in webservers,, the browser will get one of the webserver IP addresses and try it and if it fails it will give up. Is this correct? If so,, then the only way to direct traffic away from a failed IP address would be with the DNS servers.. and even that would not update immediately?

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  • Why Java applicaiton is running slow for clients on Linux

    - by Darshani
    We have two linux servers which have Apache Tomcat Installed. One is running the Database, the other is running with Java application. More than 100 users are connected to the servers. Server machines are quad core normal PC's which have 4 GB memory. It was running properly for the last 6 months but the application has recently started to run slowly . Suddenly the Java application is getting stuck & users cannot work for some time. There is no network issue. I am trying to identify the reason for this, whether it is a machine problem or the problem is in the Java application. Can any body help me with this?

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  • How failover should work in IIS cluster with Application Request Routing?

    - by username
    I have set up several servers with IIS and connected them to the load balancer - server with installed IIS Application Request Routing. I have created a server farm and added two servers. Then I stopped IIS on the first server and tried to open my web site. It returned me an error: 502 - Web server received an invalid response while acting as a gateway or proxy server. But if instead of stopping IIS I shut down the first server, I'm getting a response from the next server which is online. The question is, what the expected behaviour should be for failover with ARR, should it switch me to the next server if IIS is stopped and server is online?

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  • Remotely enter encryption key?

    - by Jason Swett
    This might be a really dumb question but here goes, anyway. I just bought a couple servers. I already installed Ubuntu with encrypted LVM on one and I'm planning on doing the same with the other. This means that every time I boot up each of these machines, I have to enter the passphrase. And I'll have to do this every morning because I'll power each machine off each night for security reasons. Here's the problem: I don't have monitors or keyboards for these servers. It seems to me I have two options: Somehow enter the passphrase remotely Buy a KVM switch I doubt #1 is an option but I want to make sure it's not before I buy a KVM. Is it possible to enter the passphrase remotely? AND is it a good idea?

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  • Can I use dis-similar HW for Win2008r2 DFS-R

    - by cwheeler33
    The setup: Windows 2008R2 Ent on two machines. The roles on each server will include File Servers and DC's. The machines come from two different vendors (Dell/HP) The Dell is an Athlon and the HP is an Intel. Both have roughly the same speed CPU and 8GB of RAM. They have different Raid controllers, and more or less the same amount of disk space (roughly 6TB.) Can the servers use different types of hardware? Is there any documentation about this? The last question I have is about the network. Can DFS-R be forced to use a differen subnet from the regular network?

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  • How can I tell if my ISP is redirecting my DNS queries?

    - by Nack
    I've attempted to use some DNS services like OpenDNS, and no matter what I do the DNS queries don't return the expected results. Watching the packet traffic on my firewall, I can see the queries go out to the intended DNS server address and responses coming back, but the results are not as expected, for example, the OpenDNS test page always fails even though the requests appear to be going to their servers. I suspect my ISP is intercepting DNS queries and sending them to their own servers. Is there a way to verify this? Is there something else I might be missing? I'm using 3G wireless service from Sprint.

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  • Start TLS and 389 Directory

    - by Kyle Flavin
    I'm trying to configure Start TLS on 389 Directory server, but I'm having all sorts of issues. I've been following this doc: https://access.redhat.com/knowledge/docs/en-US/Red_Hat_Directory_Server/9.0/html/Administration_Guide/managing-certs.html which specifies that I should create a certificate for both the directory server and admin server. I've imported the CA cert on both servers. I've tried to use the same server certificate for both. It will not allow me to do so. However, the admin and directory servers reside on the same host. If I generate a new certificate it will need to use the same hostname. I'm not sure if that's valid... Has anyone out there set this up before? Any direction would be helpful. I have multmaster replication set up. From an external client, I'm attempting to do an ldapsearch -ZZ -x -h "myhost" -b "dc=example,dc=com" -D "cn=Directory Manager" -W "", and I'm getting a protocol error.

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  • Terminal Server 2003 Login Issue - Insufficient system resources exist to complete the requested ser

    - by LP
    Afternoon. We have three identical terminal servers running Windows Server 2003 SP2, on these servers there are about 250 concurrent users logged on. We're running Roaming Profiles on a central server running Active Directory which cache the profiles locally on each terminal server as well. When one, and just that one, user tries to login she gets this error message (roughly translated from Swedish): "You could not be logged in becouse your principle could not be registered. Check that you're connected to the network or ask your administrator Insufficient system resources exist to complete the requested service." Anyone have an idea about this? I'm stumped ... Best Regards LP

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  • Reverse Proxy Server SSL?

    - by valveLondon
    Context We currently have an Apache web server in the DMZ set up as a reverse proxy and load balancer for two machines running Windows Server 2008 (IIS) inside. The Apache server has a genuine SSL certificate and serves up both http and https, however, the balancer members in the load balancing section are set to: BalancerMember {https://server1} and {https://server2}. The IIS web servers have self-signed certificates in order to respond to the https requests. My question: Do we need to forward any requests from Apache (in the DMZ) to the inside using SSL? e.g can the reverse proxy forward the requests using HTTP? and if so, why would I choose to forward them with SSL? (how secure is the http line between the dmz and the inside); In other words, can I totally disable SSL on my inside web servers?

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  • How can I sync Access databases and keep them up-to-date?

    - by user327472
    I have an Access database on my server. We split it up and use the front-end database for search data and adding new records or reports in local computer. If we update or add a new record, that writes to the back-end of database. I want to use this database in the other building with other servers. Also, those servers have no direct connection. How can I sync both back-end databases to keep the database data up to date? These details may be useful: It's a big amount of data - about 25,750 client records. I guess there are more than 25 tables at 80 MB.

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  • Sharing files between multiple computers?

    - by Koalatea
    At my school, we have 13 iMacs that we use to make our yearbook. Currently our school has some servers for us, but since we work with so many files ( thousands of pictures, most of which are ~3MB ) it slows down far too much. Is there a way to better share files between our computers? We are on a wireless network and the whole school shares the same servers, we have around probably 400 computers in the school. Is there a hardware fix I can do? Something like buying an external and hooking only yearbook computers to it?

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