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  • Embarrassingly parallel workflow creates too many output files

    - by Hooked
    On a Linux cluster I run many (N > 10^6) independent computations. Each computation takes only a few minutes and the output is a handful of lines. When N was small I was able to store each result in a separate file to be parsed later. With large N however, I find that I am wasting storage space (for the file creation) and simple commands like ls require extra care due to internal limits of bash: -bash: /bin/ls: Argument list too long. Each computation is required to run through a qsub scheduling algorithm so I am unable to create a master program which simply aggregates the output data to a single file. The simple solution of appending to a single fails when two programs finish at the same time and interleave their output. I have no admin access to the cluster, so installing a system-wide database is not an option. How can I collate the output data from embarrassingly parallel computation before it gets unmanageable?

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  • MPI4Py Scatter sendbuf Argument Type?

    - by Noel
    I'm having trouble with the Scatter function in the MPI4Py Python module. My assumption is that I should be able to pass it a single list for the sendbuffer. However, I'm getting a consistent error message when I do that, or indeed add the other two arguments, recvbuf and root: File "code/step3.py", line 682, in subbox_grid i = mpi_communicator.Scatter(station_range, station_data) File "Comm.pyx", line 427, in mpi4py.MPI.Comm.Scatter (src/ mpi4py_MPI.c:44993) File "message.pxi", line 321, in mpi4py.MPI._p_msg_cco.for_scatter (src/mpi4py_MPI.c:14497) File "message.pxi", line 232, in mpi4py.MPI._p_msg_cco.for_cco_send (src/mpi4py_MPI.c:13630) File "message.pxi", line 36, in mpi4py.MPI.message_simple (src/ mpi4py_MPI.c:11904) ValueError: message: expecting 2 or 3 items Here is the relevant code snipped, starting a few lines above 682 mentioned above. for station in stations #snip--do some stuff with station station_data = [] station_range = range(1,len(station)) mpi_communicator = MPI.COMM_WORLD i = mpi_communicator.Scatter(station_range, nsm) #snip--do some stuff with station[i] nsm = combine(avg, wt, dnew, nf1, nl1, wti[i], wtm, station[i].id) station_data = mpi_communicator.Gather(station_range, nsm) I've tried a number of combinations initializing station_range, but I must not be understanding the Scatter argument types properly. Does a Python/MPI guru have a clarification this?

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  • mean and variance of image in single pass

    - by ajith
    hi everyone,am trying to calculate mean and variance using 3X3 window over image(hXw) in opencv...here is my code...is there any accuracy issues with this??or is there any other efficient method to do it in one pass.? int pi,a,b; for(i=1;i

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  • Scaling larger Image problem.

    - by krishna
    Hi, I m developing flex application, in which I want to Draw Image from User local hard-drive to the canvas of size 640x360. User can choose Image of bigger resolution & is scaled to Canvas size. But if user selected images of larger resolution like 3000x2000, the scaling take lot time & freezes the application until scale done. Is there any method to scale image faster or kind of threading can be done? I am using matrix to scale Image as below: var mat:Matrix = new Matrix(); var scalex:Number = canvasScreen.width/content.width; var scaley:Number = canvasScreen.height/content.height; mat.scale(scalex,scaley); canvasScreen.graphics.clear(); canvasScreen.graphics.beginBitmapFill(content.bitmapData,mat);

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  • How to generate irregular ball shapes?

    - by tomato
    What kind of algorithms would generate random "goo balls" like those in World of Goo. (btw, if you haven't played it yet, highly recommended). I'm using Proccesing, but any generic algorithm would do. I guess it boils down to how to "randomly" make balls that are kind of round, but not perfectly round, and still looking realistic. Thanks in advance!

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  • simple process rollback question

    - by OckhamsRazor
    hi folks! while revising for an exam, i came across this simple question asking about rollbacks in processes. i understand how rollbacks occur, but i need some validation on my answer. The question: my confusion results from the fact that there is interprocess communication between the processes. does that change anything in terms of where to rollback? my answer would be R13, R23, R32 and R43. any help is greatly appreciated! thanks!

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  • How to scale JPEG images with a non-standard sampling factor in Java?

    - by HRJ
    I am using Java AWT for scaling a JPEG image, to create thumbnails. The code works fine when the image has a normal sampling factor ( 2x2,1x1,1x1 ) However, an image which has this sampling factor ( 1x1, 1x1, 1x1 ) creates problem when scaled. The colors get corrupted though the features are recognizable. The original and the thumbnail: The code I am using is roughly equivalent to: static BufferedImage awtScaleImage(BufferedImage image, int maxSize, int hint) { // We use AWT Image scaling because it has far superior quality // compared to JAI scaling. It also performs better (speed)! System.out.println("AWT Scaling image to: " + maxSize); int w = image.getWidth(); int h = image.getHeight(); float scaleFactor = 1.0f; if (w > h) scaleFactor = ((float) maxSize / (float) w); else scaleFactor = ((float) maxSize / (float) h); w = (int)(w * scaleFactor); h = (int)(h * scaleFactor); // since this code can run both headless and in a graphics context // we will just create a standard rgb image here and take the // performance hit in a non-compatible image format if any Image i = image.getScaledInstance(w, h, hint); image = new BufferedImage(w, h, BufferedImage.TYPE_INT_RGB); Graphics2D g = image.createGraphics(); g.drawImage(i, null, null); g.dispose(); i.flush(); return image; } (Code courtesy of this page ) Is there a better way to do this? Here's a test image with sampling factor of [ 1x1, 1x1, 1x1 ].

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  • Removing the transperancy from image while keeping the actual image

    - by KPL
    Hello people, I have three images,and , they are not square or rectangular in shape. They are just like face of anyone. So,basically, my images are in the size 196x196 or anything like that, but complete square or rectangle with the face in the middle and transperant background in the rest of the portion. Now, I want to remove the transperant background too and just keep the faces. Don't know if this is possible and mind you, this isn't a programming question.

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  • Using PHP GD to create image form text with different fonts.

    - by Meredith
    I have been using this simple script to generate images from text: <?php header('Content-type: image/png'); $color = RgbfromHex($_GET['color']); $text = urldecode($_GET['text']); $font = 'arial.ttf'; $im = imagecreatetruecolor(400, 30); $bg_color = imagecolorallocate($im, 255, 255, 255); $font_color = imagecolorallocate($im, $color[0], $color[1], $color[2]); imagefilledrectangle($im, 0, 0, 399, 29, $bg_color); imagettftext($im, 20, 0, 10, 20, $font_color, $font, $text); imagepng($im); imagedestroy($im); function RgbfromHex($hexValue) { if(strlen(trim($hexValue))==6) { return array( hexdec(substr($hexValue,0,2)), // R hexdec(substr($hexValue,2,4)), // G hexdec(substr($hexValue,4,6)) // B ); } else return array(0, 0, 0); } ?> I call the script with file.php?text=testing script&color=000000 Now I'd like to know how could I generate text with normal and bold fonts mixed in the same image, something like file.php?text=testing <b>script</b>&color=000000

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  • CUDA small kernel 2d convolution - how to do it

    - by paulAl
    I've been experimenting with CUDA kernels for days to perform a fast 2D convolution between a 500x500 image (but I could also vary the dimensions) and a very small 2D kernel (a laplacian 2d kernel, so it's a 3x3 kernel.. too small to take a huge advantage with all the cuda threads). I created a CPU classic implementation (two for loops, as easy as you would think) and then I started creating CUDA kernels. After a few disappointing attempts to perform a faster convolution I ended up with this code: http://www.evl.uic.edu/sjames/cs525/final.html (see the Shared Memory section), it basically lets a 16x16 threads block load all the convolution data he needs in the shared memory and then performs the convolution. Nothing, the CPU is still a lot faster. I didn't try the FFT approach because the CUDA SDK states that it is efficient with large kernel sizes. Whether or not you read everything I wrote, my question is: how can I perform a fast 2D convolution between a relatively large image and a very small kernel (3x3) with CUDA?

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  • What is the wrong of this converted code?

    - by Gum Slashy
    I'm developing shape identification project using javacv and I have found some opencv code to identify U shapes in particular image and I have try to convert it in to javacv but it doesn't provide same out put. Can you please help me to convert this opencv code into javacv? This is Opencv code import cv2 import numpy as np img = cv2.imread('sofud.jpg') gray = cv2.cvtColor(img,cv2.COLOR_BGR2GRAY) ret,thresh = cv2.threshold(gray,127,255,1) contours,hierarchy = cv2.findContours(thresh,cv2.RETR_LIST,cv2.CHAIN_APPROX_SIMPLE) for cnt in contours: x,y,w,h = cv2.boundingRect(cnt) if 10 < w/float(h) or w/float(h) < 0.1: cv2.rectangle(img,(x,y),(x+w,y+h),(0,0,255),2) cv2.imshow('res',img) cv2.waitKey(0) cv2.destroyAllWindows() This is the expected output This is the code that I have converted import com.googlecode.javacpp.Loader; import com.googlecode.javacv.CanvasFrame; import static com.googlecode.javacpp.Loader.*; import static com.googlecode.javacv.cpp.opencv_core.*; import static com.googlecode.javacv.cpp.opencv_imgproc.*; import static com.googlecode.javacv.cpp.opencv_highgui.*; import java.io.File; import javax.swing.JFileChooser; public class TestBeam { public static void main(String[] args) { CvMemStorage storage=CvMemStorage.create(); CvSeq squares = new CvContour(); squares = cvCreateSeq(0, sizeof(CvContour.class), sizeof(CvSeq.class), storage); JFileChooser f=new JFileChooser(); int result=f.showOpenDialog(f);//show dialog box to choose files File myfile=null; String path=""; if(result==0){ myfile=f.getSelectedFile();//selected file taken to myfile path=myfile.getAbsolutePath();//get the path of the file } IplImage src = cvLoadImage(path);//hear path is actual path to image IplImage grayImage = IplImage.create(src.width(), src.height(), IPL_DEPTH_8U, 1); cvCvtColor(src, grayImage, CV_RGB2GRAY); cvThreshold(grayImage, grayImage, 127, 255, CV_THRESH_BINARY); CvSeq cvSeq=new CvSeq(); CvMemStorage memory=CvMemStorage.create(); cvFindContours(grayImage, memory, cvSeq, Loader.sizeof(CvContour.class), CV_RETR_CCOMP, CV_CHAIN_APPROX_SIMPLE); System.out.println(cvSeq.total()); for (int i = 0; i < cvSeq.total(); i++) { CvRect rect=cvBoundingRect(cvSeq, i); int x=rect.x(),y=rect.y(),h=rect.height(),w=rect.width(); if (10 < (w/h) || (w/h) < 0.1){ cvRectangle(src, cvPoint(x, y), cvPoint(x+w, y+h), CvScalar.RED, 1, CV_AA, 0); //cvSeqPush(squares, rect); } } CanvasFrame cnvs=new CanvasFrame("Beam"); cnvs.setDefaultCloseOperation(javax.swing.JFrame.EXIT_ON_CLOSE); cnvs.showImage(src); //cvShowImage("Final ", src); } } This is the out put that I got please can some one help me to solve this problem ?

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  • What's the fastest way to strip and replace a document of high unicode characters using Python?

    - by Rhubarb
    I am looking to replace from a large document all high unicode characters, such as accented Es, left and right quotes, etc., with "normal" counterparts in the low range, such as a regular 'E', and straight quotes. I need to perform this on a very large document rather often. I see an example of this in what I think might be perl here: http://www.designmeme.com/mtplugins/lowdown.txt Is there a fast way of doing this in Python without using s.replace(...).replace(...).replace(...)...? I've tried this on just a few characters to replace and the document stripping became really slow.

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  • How to display a thumb image or first frame from a MP4 file using Delphi 7

    - by Edelcom
    Hi, I need to display a thumbnail preview of a folder full of MP4 files. So, is there a Delphi 7 component which extract a thumbnail image from MP4 files (if MP4 does contain a thumbnail image), or is there a Delphi 7 component which can extract the 1st frame from a MP4 file ? I need to extract it so I can save it to a .jpg or .png file (to be used again later on). Any ideas, Thanks.

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  • looping through variable post vars and adding them to the database

    - by Neil Hickman
    I have been given the task of devising a custom forms manager that has a mysql backend. The problem I have now encountered after setting up all the front end, is how to process a form that is dynamic. For E.G Form one could contain 6 fields all with different name attributes in the input tag. Form two could contain 20 fields all with different name attributes in the input tag. How would i process the forms without using up oodles of resource.

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  • Scaling up an image

    - by codefail
    How do I fulfill the condition "returns the entire scaled up image" If I am coding this correctly, scaleColor handles individual colors, getRed handles the red, etc. I am multiplying this by the input, numTimes, which will create a new image that is scaled up it. This scaled up (increase size) is to be returned. This is what I have. Image Image::scaleUp(int numTimes) const { for (int x = 0; x < width; x++) { for (int y = 0; y < height; y++) { pixelData[x][y].scaleColor(pixelData[x][y].scaleRed(pixelData[x][y].getRed()*numTimes)); pixelData[x][y].scaleColor(pixelData[x][y].scaleGreen(pixelData[x][y].getGreen()*numTimes)); pixelData[x][y].scaleColor(pixelData[x][y].scaleBlue(pixelData[x][y].getBlue()*numTimes)); } } //return Image(); }

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  • How to read and save data from text file with variable number of columns in a Matrix in Matlab

    - by khan
    I have a text file with integer values. each row contains information about specific object. But unfortunately each row has different number of column. because of which when i try to use file_content = load('txtfile.txt'); it gives me error message that previous number of columns does not match. i also tried to use fgetl, fscanf, etc function but was unsuccessful. Can anybody give me a piece of code, or help me how to read a txt file and save in matrix in matlab. Three sample rows are given below. 1 1 1 1 1 95 17 54 111 92 17 54 111 92 17 54 111 92 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 54 109 92 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 58 109 96 15 58 109 96 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 58 109 96 15 56 109 94 15 56 109 94 15 58 109 96 15 58 109 96 15 56 109 94 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 17 58 111 96 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 15 56 109 94 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 1 1 1 2 96 185 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 15 56 109 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 54 107 92 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 13 56 107 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 54 109 92 15 54 109 92 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 1 1 1 3 186 245 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 56 109 94 15 58 109 96 15 58 109 96 15 58 109 96 15 58 109 96 13 58 107 96 13 56 107 94 13 56 107 94 13 58 107 96 13 58 107 96 13 58 107 96 13 58 107 96 13 58 107 96 13 56 107 94 13 58 107 96 13 58 107 96 13 58 107 96 13 58 107 96 13 58 107 96 13 58 107 96 13 58 107 96 13 58 107 96 13 58 107 96 13 58 107 96 13 58 107 96 13 60 107 98 13 58 107 96 13 58 107 96 15 58 109 96 13 58 107 96 As you can see the rows doesn't have equal number of columns. So how can i read and save it in a Matrix. Any help in this regards will be highly appreciated. Thanks

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  • What is the best algorithm to locate a point in an image file?

    - by suugaku
    Hi all, I want to create a mark sheet recognizer. Here is the description: My system uses black and white color scheme. The mark sheet paper has a small black rectangle on each corner and an additional small black rectangle, to determine orientation, near one of the previous rectangles. The paper is scanned to yield an image (in bmp format for example). The first step is to locate these five references in image as eficient as possible. My rough idea is to trace row by row and from left to right for each row. It sounds very slow I think. Is there any better way to do that? Thank you in advance. regards, Suugaku

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  • What is the best way to detect white color?

    - by dnul
    I'm trying to detect white objects in a video. The first step is to filter the image so that it leaves only white-color pixels. My first approach was using HSV color space and then checking for high level of VAL channel. Here is the code: //convert image to hsv cvCvtColor( src, hsv, CV_BGR2HSV ); cvCvtPixToPlane( hsv, h_plane, s_plane, v_plane, 0 ); for(int x=0;x<srcSize.width;x++){ for(int y=0;y<srcSize.height;y++){ uchar * hue=&((uchar*) (h_plane->imageData+h_plane->widthStep*y))[x]; uchar * sat=&((uchar*) (s_plane->imageData+s_plane->widthStep*y))[x]; uchar * val=&((uchar*) (v_plane->imageData+v_plane->widthStep*y))[x]; if((*val>170)) *hue=255; else *hue=0; } } leaving the result in the hue channel. Unfortunately, this approach is very sensitive to lighting. I'm sure there is a better way. Any suggestions?

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  • what is problem in the following matlab codes

    - by raju
    img=imread('img27.jpg'); %function rectangle=rect_test(img) % edge detection [gx,gy]=gradient(img); gx=abs(gx); gy=abs(gy); g=gx+gy; g=abs(g); % make it 300x300 img=zeros(300); s=size(g); img(1:s(1),1:s(2))=g; figure; imagesc((img)); colormap(gray); title('Edge detection') % take the dct of the image IM=abs(dct2(img)); figure; imagesc((IM)); colormap(gray); title('DCT') % normalize m=max(max(IM)); IM2=IM./m*100; % get rid of the peak size_IM2=size(IM2); IM2(1:round(.05*size_IM2(1)),1:round(.05*size_IM2(2))) = 0; % threshold L=length( find(IM2>20)) ; if( L > 60 ) ret = 1; else ret = 0; end

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