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  • What do you think is the best language for Bioinformatics?

    - by Ben Fossen
    I have done a couple research jobs in Bio-informatics and I have used Matlab for them. Matlab had a lot of powerful tools and was easy to use. I did thinks with genome sequencing and predicting metabolic pathways. I am wondering what other people think is best? or there might not be one specific language but a few that lend themselves best to Bio-informatics work that is math heavy and deals with a large amount of data.

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  • Display all images from outside web root folder using PHP

    - by micmola
    Hello, I want to display all images that are stored outside my web root folder. Please help me. I am only able to display one image repeatedly. For example, if I have 5 images in my folder, only one image is displayed on my browser 5 times. Please help me on this. I've been working on this problem for over a month now. I'm a newbie. Help. Thank you. Here is the code I'm using. images.php <?php // Get our database connector require("includes/copta.php"); // Grab the data from our people table $sql = "select * from people"; $result = mysql_query($sql) or die ("Could not access DB: " . mysql_error()); $imgLocation = " /uploadfile/"; while ($row = mysql_fetch_array($result)) { $imgName = $row["filename"]; $imgPath = $imgLocation . $imgName; echo "<img src=\"call_images.php?imgPath=" . $imgName . "\" alt=\"\"><br/>"; echo $row['id'] . " " . $imgName. "<br />"; } ?> call_images.php <?php // Get our database connector require("includes/copta.php"); $imgLocation = '/ uploadz/'; $sql = "select * from people"; $result = mysql_query($sql) or die ("Could not access DB: " . mysql_error()); while ($row = mysql_fetch_array($result)) { $imgName = $row["filename"]; $imgPath = $imgLocation . $imgName; // Make sure the file exists if(!file_exists($imgPath) || !is_file($imgPath)) { header('HTTP/1.0 404 Not Found'); die('The file does not exist'); } // Make sure the file is an image $imgData = getimagesize($imgPath); if(!$imgData) { header('HTTP/1.0 403 Forbidden'); die('The file you requested is not an image.'); } // Set the appropriate content-type // and provide the content-length. header("Pragma: public"); header("Expires: 0"); header("Cache-Control: must-revalidate, post-check=0, pre-check=0"); header("Content-Type: image/jpg"); header("Content-length: " . filesize($imgPath)); // Print the image data readfile($imgPath); exit(); } ?>

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  • Domain Model + LINQ to SQL sample

    - by lmsasu
    Hello all, I wonder if there is an enterprise application sample, designed with Domain Model in the Business Logic layer and LINQ for the Data Mapper? I'm not so sure of how to use the UnitOfWork ability of LINQ to SQL in conjunction with business objects from the Business Layer. Thanks, Lucian

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  • Method Vs Property

    - by obsoleteattribute
    Hi, I'm a newbie to .NET. I have a class called Project, a project can have multiple forecasts.Now If I want to check if the projects has any forecasts or not should I use a readonly boolean property called HasForecast() or should I use a method named HasForecast() which basically returns a boolean value.From framework design guidelines I came to know that methods should be used when the operation is complex,since here I'm retrieving the value of forecasts from DB should I consider method, or since it is a logical data member should I use a property.If I use a property can I call a method in DBLayer from its getter.Please explain Regards, Ravi

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  • json with Autocomplete?

    - by acidzombie24
    I am using Jquery Autocomplete I am also using the formatItem. I would like the output to be <json.key: json.value ex Name: Adam However i cant get the json data using the 4th param and i am getting the full json string as the 4th param and one result. How do i use json with this? is another autocomplete recommended? (this one looks pretty good...)

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  • Debug Deserialization on Silverlight Client

    - by Andrew Garrison
    I'm working on a Silverlight client that interacts with a WCF web service. The Silverlight client and the WCF web service are using the same class library for their data entities that they are passing back and forth over the wire. I just added a new entity, and it's not being correctly deserialized on the Silverlight client. My question is, how can I debug the System.ServiceModel.ClientBase as it is deserializing an entity that it received from a WCF web service?

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  • How can I get a list of licenses from intalled RPMs?

    - by Peter
    We've been asked to list all the software and licenses used in our organization. Without deciding the value of this request, I'd like to get my Fedora laptop to answer the question easily. rpm -qa Gives me a list of packages, but no license data. My next step is to take that output and write a script to query each package's license. Anyone got an easier idea?

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  • Login function runs different between local and server

    - by quangnd
    Here is my check login function: protected bool checkLoginStatus(String email, String password) { bool loginStatus = false; bool status = false; try { Connector.openConn(); String str = "SELECT * FROM [User]"; SqlCommand cmd = new SqlCommand(str, Connector.conn); SqlDataAdapter da = new SqlDataAdapter(cmd); DataSet ds = new DataSet(); da.Fill(ds, "tblUser"); //check valid foreach (DataRow dr in ds.Tables[0].Rows) { if (email == dr["Email"].ToString() && password == Connector.base64Decode(dr["Password"].ToString())) { Session["login_status"] = true; Session["username"] = dr["Name"].ToString(); Session["userId"] = dr["UserId"].ToString(); status = true; break; } } } catch (Exception ex) { } finally { Connector.closeConn(); } return status; } And call it at my aspx page: String email = Login1.UserName.Trim(); String password = Login1.Password.Trim(); if (checkLoginStatus(email, password)) Response.Redirect(homeSite); else lblFailure.Text = "Invalid!"; I ran this page at localhost successful! When I published it to server, this function only can run if email and password correct! Other, error occured: A network-related or instance-specific error occurred while establishing a connection to SQL Server. The server was not found or was not accessible. Verify that the instance name is correct and that SQL Server is configured to allow remote connections. (provider: SQL Network Interfaces, error: 26 - Error Locating Server/Instance Specified) I tried open SQL Server 2008 Configuration Manager and enable SQL Server Browser service (Logon as:NT Authority/Local Service) but it stills error. (note: here is connection string of openConn() at Localhost (run on SQLEXpress 2005) connectionString="Data Source=MYLAPTOP\SQLEXPRESS;Initial Catalog=Spider_Vcms;Integrated Security=True" /> ) At server (run on SQL Server Enterprise 2008) connectionString="Data Source=SVR;Initial Catalog=Spider_Vcms;User Id=abc;password=123456;" /> anyone have an answer for my problem :( thanks a lot!

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  • using php and java script in a form

    - by Gal Miller
    I am a little bit lost. What I want to achieve is: my own custom button change onMouseOver etc' keep it's size post the information to a php server side code What I'm missing is: The post - I couldn't figure out how to combine js & php The Button size - my code sets a size for the original button but after the rollover it changes The code: <html> <head> </head> <body> <script> function form_on_click(frm) { document.buttonMore.src='bottom_more_click.JPG'; frm.submit(); } </script> <div style="position: absolute; left: 120px; top: 90px; background-image: url(myBackgroundPicture.jpg); background-repeat:no-repeat; width: 800px; height: 280px; padding: 15px;"> <form method="post" action="<?php echo $_SERVER['PHP_SELF']; ?>"> <input type="text" name="whatever" size= "55" height="100" lang="en" dir="ltr" style="margin-top: 188px; margin-left: 95px; height: 20px; background-color: transparent; border:none; color: #FFFFFF; font-family: Verdana; font-weight: none; font-size: 18px;"> <a onmouseover="document.buttonMore.src='bottom_more_hover.JPG'" onmouseout="document.buttonMore.src='bottom_more_reg.JPG'" onmousedown= "form_on_click(this.form) this.form.submit()" onmouseup="document.buttonMore.src='bottom_more_hover.JPG'"> <img src="bottom_more_reg.jpg" name="buttonMore" height="30" width="173" border="0" alt="MORE!" style="margin-bottom:-10px; margin-left: 15px; height: 30px; width: 100px;"> </a> </form> </div> </body>

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  • How know when my mongoDB database overhead ?

    - by shingara
    I installed a MongoDB database on my server. My server is in 32Bit and I can't change it soon. When you use MongoDB in a 32Bit architecture you have a limit of 2,5Go of data, as mentionned in this MongoDB blog post. The thing is that I have several database. So how can I know if I am close or not to this limit ?

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  • Are there any protocols/standards on top of TCP optimized for high throughput and low latency?

    - by Nosrama
    Are there any protocols/standards that work over TCP that are optimized for high throughput and low latency? The only one I can think of is FAST. At the moment I have devised just a simple text-based protocol delimited by special characters. I'd like to adopt a protocol which is designed for fast transfer and supports perhaps compression and minification of the data that travels over the TCP socket.

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  • Do Websites need Local Databases Anymore?

    - by viatropos
    If there's a better place to ask this, please let me know. Every time I build a new website/blog/shopping-cart/etc., I keep trying to do the following: Extract out common functionality into reusable code (Rubygems and jQuery plugins mostly) If possible, convert that gem into a small service so I never have to deal with a database for the objects involved (by service, I mean something lean and mean, usually built with the Sinatra Web Framework with a few core models). My assumption is, if I can remove dependencies on local databases, that will make it easier and more scalable in the long run (scalable in terms of reusability and manageability, not necessarily database/performance). I'm not sure if that's a good or bad assumption yet. What do you think? I've made this assumption because of the following reason: Most serious database/model functionality has been built on the internet somewhere. Just to name a few: Social Network API: Facebook Messaging API: Twitter Mailing API: Google Event API: Eventbrite Shopping API: Shopify Comment API: Disqus Form API: Wufoo Image API: Picasa Video API: Youtube ... Each of those things are fairly complicated to build from scratch and to make as optimized, simple, and easy to use as those companies have made them. So if I build an app that shows pictures (picasa) on an Event page (eventbrite), and you can see who joined the event (facebook events), and send them emails (google apps api), and have them fill out monthly surveys (wufoo), and watch a video when they're done (youtube), all integrated into a custom, easy to use website, and I can do that without ever creating a local database, is that a good thing? I ask because there's two things missing from the puzzle that keep forcing me to create that local database: Post API RESTful/Pretty Url API While there's plenty of Blogging systems and APIs for them, there is no one place where you can just write content and have it part of some massive thing. For every app, I have to use code for creating pretty/restful urls, and that saves posts. But it seems like that should be a service! Question is, is that what the website is? ...That place to integrate the worlds services for my specific cause... and, sigh, to store posts that only my site has access to. Will everyone always need "their own blog"? Why not just have a profile and write lots of content on an established platform like StackOverflow or Facebook? ... That way I can write apps entirely without a database and know that I'm doing it right. Note: Of course at some point you'd need a database, if you were doing something unique or new. But for the case where you're just rewiring information or creating things like videos, events, and products, is it really necessary anymore??

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  • Programming interface

    - by user309010
    Hi All, I currently building a data collection system [mainly "EFM" - enterprise feed back management] using .NET. I was wondering if there is a possibility to provide the user to script and manipulate the objects - like a programming language but with minor functionalities Thanks

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  • XCode sqlite3 - SELECT always return SQLITE_DONE

    - by user573633
    Hi developers.... a noob here asking for help after a day of head-banging.... I am working on an app with sqlite3 database with one database and two tables. I have now come to a step where I want to select from the table with an argument. The code is here: -(NSMutableArray*) getGroupsPeopleWhoseGroupName:(NSString*)gn;{ NSMutableArray *groupedPeopleArray = [[NSMutableArray alloc] init]; const char *sql = "SELECT * FROM Contacts WHERE groupName='?'"; @try { NSArray * paths = NSSearchPathForDirectoriesInDomains(NSDocumentDirectory,NSUserDomainMask, YES); NSString *docsDir = [paths objectAtIndex:0]; NSString *theDBPath = [docsDir stringByAppendingPathComponent:@"ContactBook.sqlite"]; if (!(sqlite3_open([theDBPath UTF8String], &database) == SQLITE_OK)) { NSLog(@"An error opening database."); } sqlite3_stmt *st; NSLog(@"debug004 - sqlite3_stmt success."); if (sqlite3_prepare_v2(database, sql, -1, &st, NULL) != SQLITE_OK) { NSLog(@"Error, failed to prepare statement."); } //DB is ready for accessing, now start getting all the info. while (sqlite3_step(st) == SQLITE_ROW) { MyContacts * aContact = [[MyContacts alloc] init]; //get contactID from DB. aContact.contactID = sqlite3_column_int(st, 0); if (sqlite3_column_text(st, 1) != NULL) { aContact.firstName = [NSString stringWithUTF8String:(char *) sqlite3_column_text(st, 1)]; } else { aContact.firstName = @""; } // here retrieve other columns data .... //store these info retrieved into the newly created array. [groupedPeopleArray addObject:aContact]; [aContact release]; } if(sqlite3_finalize(st) != SQLITE_OK) { NSLog(@"Failed to finalize data statement."); } if (sqlite3_close(database) != SQLITE_OK) { NSLog(@"Failed to close database."); } } @catch (NSException *e) { NSLog(@"An exception occurred: %@", [e reason]); return nil; } return groupedPeopleArray;} MyContacts is the class where I put up all the record variables. My problem is sqlite3_step(st) always return SQLITE_DONE, so that it i can never get myContacts. (i verified this by checking the return value). What am I doing wrong here? Many thanks in advance!

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  • Can I execute SQL statements directly in a JDO environment?

    - by Carl Rosenberger
    I am using Datanucleus JDO on top of HSqlDb. I would like to execute the following SQL statement to tell HsqlDb to set the write delay to 0: "SET WRITE_DELAY 0" Is there a way I can do this from a JDO PersistenceManager or a PersistenceManagerFactory? On a sidenote: I have tried to modify write_delay by using the following connection URL: jdbc:hsqldb:file:data/hsqldb/dbbench;write_delay=false It didn't work. I debugged the HsqlDb sources and I could still see the write delay being set to 10 seconds.

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  • Optimising speeds in HDF5 using Pytables

    - by Sree Aurovindh
    The problem is with respect to the writing speed of the computer (10 * 32 bit machine) and the postgresql query performance.I will explain the scenario in detail. I have data about 80 Gb (along with approprite database indexes in place). I am trying to read it from Postgresql database and writing it into HDF5 using Pytables.I have 1 table and 5 variable arrays in one hdf5 file.The implementation of Hdf5 is not multithreaded or enabled for symmetric multi processing.I have rented about 10 computers for a day and trying to write them inorder to speed up my data handling. As for as the postgresql table is concerned the overall record size is 140 million and I have 5 primary- foreign key referring tables.I am not using joins as it is not scalable So for a single lookup i do 6 lookup without joins and write them into hdf5 format. For each lookup i do 6 inserts into each of the table and its corresponding arrays. The queries are really simple select * from x.train where tr_id=1 (primary key & indexed) select q_t from x.qt where q_id=2 (non-primary key but indexed) (similarly five queries) Each computer writes two hdf5 files and hence the total count comes around 20 files. Some Calculations and statistics: Total number of records : 14,37,00,000 Total number of records per file : 143700000/20 =71,85,000 The total number of records in each file : 71,85,000 * 5 = 3,59,25,000 Current Postgresql database config : My current Machine : 8GB RAM with i7 2nd generation Processor. I made changes to the following to postgresql configuration file : shared_buffers : 2 GB effective_cache_size : 4 GB Note on current performance: I have run it for about ten hours and the performance is as follows: The total number of records written for each file is about 6,21,000 * 5 = 31,05,000 The bottle neck is that i can only rent it for 10 hours per day (overnight) and if it processes in this speed it will take about 11 days which is too high for my experiments. Please suggest me on how to improve. Questions: 1. Should i use Symmetric multi processing on those desktops(it has 2 cores with about 2 GB of RAM).In that case what is suggested or prefereable? 2. If i change my postgresql configuration file and increase the RAM will it enhance my process. 3. Should i use multi threading.. In that case any links or pointers would be of great help Thanks Sree aurovindh V

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  • How to format and add new numbers dynamically to hidden field?

    - by Bartek
    I get from server into client side only pure number IDs, how to add dynamically it to html hidden field so that looks like array or JSON format (I mean: ["32","33","34"]), so that in next step I can receive on serwer and parse? Hidden field contains on start only blank brackets []. My current code override hidden field from [] to e.g. "32": $("#myHiddenField").val(JSON.stringify(data.result[0].newid));

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  • jQuery - How to dynamically add a validation rule

    - by Justin
    Hey, I'm trying to dynamically add a validation rule to some dynamic controls: $("input[id*=Hours]").rules("add", "required"); However this line gives me the following error: $.data(element.form, "validator") is null Defining rules the static way with the validate function works fine. What am I doing wrong? Thanks, Justin

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  • Wordpress database migration

    - by Sean Cull
    Hi Everyone! I've looked around the Wordpress forums about this and didn't find anything so I thought I might try here. If you have a staging/dev Wordpress setup used for testing new pluging and such, how do you go about migrating the data in the staging database back to the production database? Is there a "Wordpress best practices" way to do this, or am I limited to having to manually migrate tables from one database to the other?

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