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• Convert Chunk of Data into Tabular Format Using Perl

  - by neversaint

  I have a data that looks like this 1:SRX000566 Submitter: WoldLab Study: RNASeq expression profiling for ENCODE project(SRP000228) Sample: Human cell line GM12878(SRS000567) Instrument: Solexa 1G Genome Analyzer Total: 4 runs, 62.7M spots, 2.1G bases Run #1: SRR002055, 11373440 spots, 375323520 bases Run #2: SRR002063, 22995209 spots, 758841897 bases Run #3: SRR005091, 13934766 spots, 459847278 bases Run #4: SRR005096, 14370900 spots, 474239700 bases 2:SRX000565 Submitter: WoldLab Study: RNASeq expression profiling for ENCODE project(SRP000228) Sample: Human cell line GM12878(SRS000567) Instrument: Solexa 1G Genome Analyzer Total: 3 runs, 51.2M spots, 1.7G bases Run #1: SRR002052, 12607931 spots, 416061723 bases Run #2: SRR002054, 12880281 spots, 425049273 bases Run #3: SRR002060, 25740337 spots, 849431121 bases 3:SRX012407 Submitter: GEO Study: GSE17153: Illumina sequencing of small RNAs from C. elegans embryos(SRP001363) Sample: Caenorhabditis elegans(SRS006961) Instrument: Illumina Genome Analyzer II Total: 1 run, 3M spots, 106.8M bases Run #1: SRR029428, 2965597 spots, 106761492 bases Is there a compact way to convert them into tabular format (tab separated). Hence 1 entry/row per chunk. In these case 3 rows. I tried this but doesn't seem to work. perl -laF/\n/ -000ne"print join chr(9),@F" myfile.txt

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• Share data between usercontrols

  - by toraan

  On my page I have n-userControls (same control) I need to communicate between them(to be more specific I need to pass one in value) . I don't want to involve the hosting page for that. The controls acts as "pagers" and interact with the paged data on the hostin page via events that hosting page is subscribed to. So when user click on one of the pager and changes it's state, the other control should know about it and change itself accordingly. I can not use VieState because viewstate is per control and so is the controlstate. Can I use Session for that? (session is shared and there is only one value that i need to store) Or maybe there is something better I can use? (no QueryString)

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• Most useful Rails plugins, Ruby libraries and Ruby gems?

  - by Srinivas Iyer

  I have seen many sites which provide the whole list of Rails plugins, Ruby libraries and Ruby gems, but we hardly use few of them and some may not suit our requirement and we spend a whole lot of time searching for useful plugins which suits our requirement. I have created this poll, people can post useful libraries, gems and plugins which they have come across. It would be great help for newbies like me and to the entire Ruby on Rails community. Note: to keep this poll as useful as possible, please remember: Post only one library, gem, or plugin per answer Mention the name of the library, gem, or plugin which you find it useful. URL of the location of the resource We don't want duplicate answers, so before posting check if the library has been mentioned already. Thanks

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• how to get game sound or how to create good sound for iPhone

  - by iPhone Fun

  Hi all, I am having problem of getting sound. i.e. how to get good sounds for our iPhone games? or how to make some good quality sounds for iPhone game applications so that the applications will become some more attractive? There are many sites like www.freesound.org , but I am not able to get good sounds as per my choice. If any one know from where we can get good sounds or how to make such things please help me. As this will be help full to all for using sounds in the applications of iPhone or other. Thanks in advance and Sorry for my BAD English.

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• Slow insert speed in Postgresql memory tablespace

  - by Prashant

  Hi, I have a requirement where I need to store the records at rate of 10,000 records/sec into a database (with indexing on a few fields). Number of columns in one record is 25. I am doing a batch insert of 100,000 records in one transaction block. To improve the insertion rate, I changed the tablespace from disk to RAM.With that I am able to achieve only 5,000 inserts per second. I have also done the following tuning in the postgres config: Indexes : no fsync : false logging : disabled Other information: - Tablespace : RAM - Number of columns in one row : 25 (mostly integers) - CPU : 4 core, 2.5 GHz - RAM : 48 GB I am wondering why a single insert query is taking around 0.2 msec on average when database is not writing anything on disk (as I am using RAM based tablespace). Is there something I am doing wrong? Help appreciated. Prashant

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• Module autoloader in ZF

  - by ChrisRamakers

  The manual on Zend_Application_Module_Autoloader states the following: When using module bootstraps with Zend_Application, an instance of Zend_Application_Module_Autoloader will be created by default for each discrete module, allowing you to autoload module resources. Source: http://framework.zend.com/manual/zh/zend.loader.autoloader-resource.html#zend.loader.autoloader-resource.module This requires me to create an empty bootstrap class for each of my modules or else resource autoloading per module won't work with the build-in autoloader. Now I have two questions What is a discrete module? Is there a way to have this resource autoloader registered by default for each module without the need to create a bootstrap file for each module? I want it available in each module and creating so many empty bootstrap classes is something i'd rather prevent.

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• Calculating string sizes on iPhone on a background thread

  - by jbrennan

  I've got some somewhat hefty string size calculations happening in my app (each one takes close to 500ms, and happens when the user scrolls to a new "page" in my app (like the Weather app). The delay only happens once per page, as the calculation only needs to be run once (and can even be cached for subsequent launches with the same data). Anyway, I still like to not block the UI for this type of work, as to me it screams using threads, but I know UIKit is not meant to be used from other threads. (I know NSString is not part of UIKit, but the string sizing methods are part of the UIKitAdditions...) So how should I go about doing this? What's the best way to not block the UI and do so safely?

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• Ruby server very slow outside localhost (teambox)

  - by ncatnow

  I just installed TeamBox on my Ubuntu 9.10 server. I have it up and running on port 3000 using the provided server script. It's running extremely slow, up to 30 seconds per HTTP request when connecting from another computer. I used links to load up TeamBox from the shell and it took no time at all. I then setup an SSH tunnel and again it was working very fast. I run about 30 vhosts through apache on this server, as well as SAMBA etc and do not have any problems. How can I troubleshoot this problem?

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• High-Performance In-Browser Networking

  - by Jon Purdy

  (Similar in spirit to but different in practice from this question.) Is there any cross-browser-compatible, in-browser technology that allows a high-performance perstistent network connection between a server application and a client written in, say, Javascript? Think XmlHttpRequest on caffeine. I am working on a visualisation system that's restricted to at most a few users at once, and the server is pretty robust, so it can handle as much as it needs to. I would like to allow the client to have access to video streamed from the server at a minimum of about 20 frames per second, regardless of what their graphics hardware capabilities are. Simply put: is this doable without resorting to Flash or Java?

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• Getting filtered results with subquery

  - by josepv

  I have a table with something like the following: ID Name Color 1 Bob Blue 2 John Yellow 1 Bob Green 3 Sara Red 3 Sara Green What I would like to do is return a filtered list of results whereby the following data is returned: ID Name Color 1 Bob Blue 2 John Yellow 3 Sara Red i.e. I would like to return 1 row per user. (I do not mind which row is returned for the particular user - I just need that the [ID] is unique.) I have something already that works but is really slow where I create a temp table adding all the ID's and then using a "OUTER APPLY" selecting the top 1 from the same table, i.e. CREATE TABLE #tb ( [ID] [int] ) INSERT INTO #tb select distinct [ID] from MyTable select T1.[ID], T2.[Name], T2.Color from #tb T1 OUTER APPLY ( SELECT TOP 1 * FROM MyTable T2 WHERE T2.[ID] = T1.[ID] ) AS V2 DROP TABLE #tb Can somebody suggest how I may improve it? Thanks

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• Hidden features of x86 assembly

  - by Earlz

  I am still a fan of x86 assembly(sorta) and know a lot of developers still using x86 assembly, although by far there are very few features available in assembly, let us list out the most useful and not so well known ones. Of course the question is on the lines of the Hidden Features questions listed below.: Hidden Features of JavaScript Hidden Features of CSS Hidden Features of C# Hidden Features of VB.NET Hidden Features of Java Hidden Features of ASP.NET Hidden Features of Python Hidden Features of TextPad Hidden Features of Eclipse Hidden Features of Classic ASP Please specify one feature per answer. Also, you can specify all bits of the x86 such as 16bit(real mode), 32bit, and 64bit. Please keep it neutral of assembler though. Both Intel and AT&T syntax is welcome but please don't for example demonstrate a useful macro feature for yasm.

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• Changing error message for datatype validation?

  - by Matthias

  Hey guys, I've a small question on ASP.NET MVC 2. I'm using Data Annotations on my Presentation Model and its model binder per default. But one step back, I want to do the most elementary thing: validation of the data type. Let's say I have an "int ID" on my model and want to edit the according entity in my view. If I enter something wrong like "foo", then I get a model error back, but the validation message is on English. I want to have this message in other languages, too. How can I do this? I remember that in MVC 1 I've written a custom model binder which checks the data types, but that's not what I want to do (at least not in MVC 2). Thus I hope there is a better way... Thanks, Matthias

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• Is it safe to override `release` for debugging?

  - by Koning Baard XIV

  Sometimes I need to find out if an object will really be released. I could use Instruments of course, but that takes much time, and I have to search into millions of objects, so I used to do this: -(void)release { NSLog("I'm released"); [super release]; } But the problem is: is this safe to do? Can I get any problems when I override -(void)release. Also, is it really void? And what if I build my application for distribution, but per accident leave it there? Or is it just safe? Thanks

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• Is it possible to add custom fields to a Drupal taxonomy term?

  - by user278457

  I'd like to add a date field to a drupal taxonomy term, alongside the default "title" and "description" Is there some technique/php/module that lets me do this? Is it possible to do with CCK?? I need to be able to display the new field in the same view presenting the content nodes referencing the term. At the moment, I've added a date field to the content nodes with CCK, and it's displayed by the view. But that's not exactly what I'm going for, I just want to update one date per term.

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• Visual Python - Visualize graphs relating to a movement

  - by Francisco P.

  Hello, everyone! I'm working with visual python on a project where I need to simulate a physical movement. I'd like to present, in a different window than the one the actual, 3D sim is running, two graphs, both related to the movement: How the velocity and angular velocity progress over time. How the movement and rotation progress over time. All these vars are refreshed once per cycle (inside a while(true)) How can I accomplish this? Thank you for your time!

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• Reading multiple files with PHPExcel

  - by KaOSoFt

  Hello there. I just recently started using this library (the one from CodePlex), but I ran into some issues. My goal is to use it so I can process some data from multiple Excel files, and send such data to a database, per file. I'm doing something like: foreach( $file_list as $file ) { $book = PHPExcel_IOFactory::load( $path . $file ); } So, inside the foreach I'm (for now) just showing the data to the user, but after five files, I get a memory error: Fatal error: Allowed memory size of 33554432 bytes exhausted (tried to allocate 50688 bytes) in /var/www/test/classes/PHPExcel/Shared/OLERead.php on line 76 Is there a way to __destruct the object after each file is loaded, so space is reserved (made free) for the next file, instead of accumulating it, or do you rather know of a reason and work-around for this? Please let me know any suggestions you have. Thanks in advance.

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• Comet implementation for ASP.NET?

  - by Hitchhiker

  I've been looking at ways to implement gmail-like messaging inside a browser, and arrived at the Comet concept. However, I haven't been able to find a good .NET implementation that allows me to do this within IIS (our application is written in ASP.NET 2.0). The solutions I found (or could think of, for that matter) require leaving a running thread per user - so that it could return a response to him once he gets a message. This doesn't scale at all, of course. So my question is - do you know of an ASP.NET implementation for Comet that works in a different way? Is that even possible with IIS?

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• Most used .NET namespace

  - by Michael Prewecki

  What is your most commonly used namespace in .NET. I know it will vary greatly based upon the types of projects you develop but the stack overflow audience should provide a fairly decent sample set for the types of .NET projects being developed. I'm simply interest in the name of the namespace (one namespace per answer and no one person should have more than one answer, if someone else has the same answer as you then just upvote their answer). Try to be as specific as possible (so answering System, isn't helpful). I'm after this information to help new developers focus their attention on the most common .NET namespaces...there are after all thousands of them! To start off mine is almost certainly System.Collections.Generic, I use lists of things everywhere.

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• Improve mysql JDBC insert call

  - by richs

  i have a legacy Java system that every time it gets an order it makes a JDBC call to a stored procedure for each field in the order. Generally the stored procedure will get called 20 to 30 times for each order. The store procedure is just doing an insert into a table for each field. i need to improve the performance of this operation. one thought i had was to create an insert query string that does multiple inserts in one JDBC call. MySql supports a multiple insert string. INSERT INTO PersonAge (name, age) VALUES ('Helen', 24), ('Katrina', 21), ('Samia', 22), ('Hui Ling', 25), ('Yumie', 29) This has the advantage of only requiring one JDBC call per order. Any other ideas on how to improve performance?

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• Do Scala and Erlang use green threads?

  - by CHAPa

  I've been reading a lot about how Scala and Erlang does lightweight threads and their concurrency model (actors). However, I have my doubts. Do Scala and Erlang use an approach similar to the old thread model used by Java (green threads) ? For example, suppose that there is a machine with 2 cores, so the Scala/Erlang environment will fork one thread per processor? The other threads will be scheduled by user-space (Scala VM / Erlang VM ) environment. Is this correct? Under the hood, how does this really work?

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• Need an algorithm to group several parameters of a person under the persons name

  - by QuickMist

  Hi. I have a bunch of names in alphabetical order with multiple instances of the same name all in alphabetical order so that the names are all grouped together. Beside each name, after a coma, I have a role that has been assigned to them, one name-role pair per line, something like whats shown below name1,role1 name1,role2 name1,role3 name1,role8 name2,role8 name2,role2 name2,role4 name3,role1 name4,role5 name4,role1 ... .. . I am looking for an algorithm to take the above .csv file as input create an output .csv file in the following format name1,role1,role2,role3,role8 name2,role8,role2,role4 name3,role1 name4,role5,role1 ... .. . So basically I want each name to appear only once and then the roles to be printed in csv format next to the names for all names and roles in the input file. The algorithm should be language independent. I would appreciate it if it does NOT use OOP principles :-) I am a newbie.

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• simpledateformat parsing date with 'Z' literal

  - by DanInDC

  I am trying to parse a date that looks like this: 2010-04-05T17:16:00Z This is a valid date per http://www.ietf.org/rfc/rfc3339.txt. The 'Z' literal "imply that UTC is the preferred reference point for the specified time." If I try to parse it using SimpleDateFormat and this pattern: yyyy-MM-dd'T'HH:mm:ss It will be parsed as a Mon Apr 05 17:16:00 EDT 2010 SimpleDateFormat is unable to parse the string with these patterns: yyyy-MM-dd'T'HH:mm:ssz yyyy-MM-dd'T'HH:mm:ssZ I can explicitly set the TimeZone to use on the SimpleDateFormat to get the expected output, but I don't think that should be necessary. Is there something I am missing? Is there an alternative date parser?

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• Ensure a new session every time the user connects to a Servlet

  - by Daziplqa

  Hi, I've a JSP/Servlet Web App that consist of more than one servlet (and some JSPs) I need to create an new HttpSession whenever the users access servlet A, knowing that, servlet A is the home page (i.e. he access it as the first servlet/page in the application) so far so good, I can write the following code at the start of the servlet A: HttpSession session = request.getSession(false); if (session == null) { logger.debug("starting new session..."); session = request.getSession(); // other staff here } But the problem is, if the user didn't close his browser (even if he closes the tab - in firefox for instance - the session will still be open), so when he try to open my site again, the last session will be re-used (in the rage of session timeout ofcourse), and this I don't need. I need whenever he access Servlet A, he got created a brand new HttpSession. but unfortunately, he may access this servlet twice per session based on some scenario!! Please help.

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• Include a c# file in aspx page

  - by BeraCim

  Hi all: I have an aspx page that has a @Page directive which points to a c# class. e.g. <@ Page Language="C#" EnableSessionState="true" ValidateRequest="False" Inherits="MyClass" %> MyClass extends Page, which is the code behind class for that aspx page. Now I want to add another class to the aspx page. This class does some processing and will redirect the user to another page if certain conditions are met. It will be called before the above directive. I tried adding another @Page directive, but gotten an unknown error (literally). I'm thinking that there can only be one code behind class per aspx page so I got the error when I added another one. Googling such question didnt really help me with the answer. So, how do I add another c# class to the same aspx page? Thanks.

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• What image format is fastest for BlackBerry?

  - by Ed Marty

  I'm trying to load some images using Bitmap.getBitmapResource(), but it takes about 2 or 3 seconds per image to load. I'm testing on the Storm, specifically. The odd thing is, when I install OS 5.0, the loading goes in a snap, no delay at all. Should I be looking at the format used? Or where the files are stored? I've tried both 24- and 8-bit PNGs, with transparency. The files are stored in a subdirectory in the COD, so getBitmapResource is passed a path, like "images/img1.png" instead of just "img1.png". Is any of this making things slower?

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