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• How can I apply a PSSM efficiently?

  - by flies

  I am fitting for position specific scoring matrices (PSSM aka Position Specific Weight Matrices). The fit I'm using is like simulated annealing, where I the perturb the PSSM, compare the prediction to experiment and accept the change if it improves agreement. This means I apply the PSSM millions of times per fit; performance is critical. In my particular problem, I'm applying a PSSM for an object of length L (~8 bp) at every position of a DNA sequence of length M (~30 bp) (so there are M-L+1 valid positions). I need an efficient algorithm to apply a PSSM. Can anyone help improve performance? My best idea is to convert the DNA into some kind of a matrix so that applying the PSSM is matrix multiplication. There are efficient linear algebra libraries out there (e.g. BLAS), but I'm not sure how best to turn an M-length DNA sequence into a matrix M x 4 matrix and then apply the PSSM at each position. The solution needs to work for higher order/dinucleotide terms in the PSSM - presumably this means representing the sequence-matrix for mono-nucleotides and separately for dinucleotides. My current solution iterates over each position m, then over each letter in word from m to m+L-1, adding the corresponding term in the matrix. I'm storing the matrix as a multi-dimensional STL vector, and profiling has revealed that a lot of the computation time is just accessing the elements of the PSSM (with similar performance bottlenecks accessing the DNA sequence). If someone has an idea besides matrix multiplication, I'm all ears.

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• Password Cracking in 2010 and Beyond

  - by mttr

  I have looked a bit into cryptography and related matters during the last couple of days and am pretty confused by now. I have a question about password strength and am hoping that someone can clear up my confusion by sharing how they think through the following questions. I am becoming obsessed about these things, but need to spend my time otherwise :-) Let's assume we have an eight-digit password that consists of upper and lower-case alphabetic characters, numbers and common symbols. This means we have 8^96 ~= 7.2 quadrillion different possible passwords. As I understand there are at least two approaches to breaking this password. One is to try a brute-force attack where we try to guess each possible combination of characters. How many passwords can modern processors (in 2010, Core i7 Extreme for eg) guess per second (how many instructions does a single password guess take and why)? My guess would be that it takes a modern processor in the order of years to break such a password. Another approach would consist of obtaining a hash of my password as stored by operating systems and then search for collisions. Depending on the type of hash used, we might get the password a lot quicker than by the bruteforce attack. A number of questions about this: Is the assertion in the above sentence correct? How do I think about the time it takes to find collisions for MD4, MD5, etc. hashes? Where does my Snow Leopard store my password hash and what hashing algorithm does it use? And finally, regardless of the strength of file encryption using AES-128/256, the weak link is still my en/decryption password used. Even if breaking the ciphered text would take longer than the lifetime of the universe, a brute-force attack on my de/encryption password (guess password, then try to decrypt file, try next password...), might succeed a lot earlier than the end of the universe. Is that correct? I would be very grateful, if people could have mercy on me and help me think through these probably simple questions, so that I can get back to work.

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• Action Filter Dependency Injection in ASP.NET MVC 3 RC2 with StructureMap

  - by Ben

  Hi, I've been playing with the DI support in ASP.NET MVC RC2. I have implemented session per request for NHibernate and need to inject ISession into my "Unit of work" action filter. If I reference the StructureMap container directly (ObjectFactory.GetInstance) or use DependencyResolver to get my session instance, everything works fine: ISession Session { get { return DependencyResolver.Current.GetService<ISession>(); } } However if I attempt to use my StructureMap filter provider (inherits FilterAttributeFilterProvider) I have problems with committing the NHibernate transaction at the end of the request. It is as if ISession objects are being shared between requests. I am seeing this frequently as all my images are loaded via an MVC controller so I get 20 or so NHibernate sessions created on a normal page load. I added the following to my action filter: ISession Session { get { return DependencyResolver.Current.GetService<ISession>(); } } public ISession SessionTest { get; set; } public override void OnResultExecuted(System.Web.Mvc.ResultExecutedContext filterContext) { bool sessionsMatch = (this.Session == this.SessionTest); SessionTest is injected using the StructureMap Filter provider. I found that on a page with 20 images, "sessionsMatch" was false for 2-3 of the requests. My StructureMap configuration for session management is as follows: For<ISessionFactory>().Singleton().Use(new NHibernateSessionFactory().GetSessionFactory()); For<ISession>().HttpContextScoped().Use(ctx => ctx.GetInstance<ISessionFactory>().OpenSession()); In global.asax I call the following at the end of each request: public Global() { EndRequest += (sender, e) => { ObjectFactory.ReleaseAndDisposeAllHttpScopedObjects(); }; } Is this configuration thread safe? Previously I was injecting dependencies into the same filter using a custom IActionInvoker. This worked fine until MVC 3 RC2 when I started experiencing the problem above, which is why I thought I would try using a filter provider instead. Any help would be appreciated Ben P.S. I'm using NHibernate 3 RC and the latest version of StructureMap

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• Getting exception when trying to monkey patch pymongo.connection._Pool

  - by Creotiv

  I use pymongo 1.9 on Ubuntu 10.10 with python 2.6.6 When i trying to monkey patch pymongo.connection._Pool i'm getting error on connection: AutoReconnect: could not find master/primary But when i change _Pool class in pymongo.connection module, it work pretty fine. Even if i copy _Pool implementation from pymongo.connection module and will try to monkey patch by the same code, it still giving same exception. I need to remove threading.local from _Pool class, because i use gevent and i need to implement Pool for all mongo connections(for all threads). I use this code: import pymongo class GPool: """A simple connection pool. Uses thread-local socket per thread. By calling return_socket() a thread can return a socket to the pool. Right now the pool size is capped at 10 sockets - we can expose this as a parameter later, if needed. """ # Non thread-locals __slots__ = ["sockets", "socket_factory", "pool_size","sock"] #sock = None def __init__(self, socket_factory): self.pool_size = 10 if not hasattr(self,"sock"): self.sock = None self.socket_factory = socket_factory if not hasattr(self, "sockets"): self.sockets = [] def socket(self): # we store the pid here to avoid issues with fork / # multiprocessing - see # test.test_connection:TestConnection.test_fork for an example # of what could go wrong otherwise pid = os.getpid() if self.sock is not None and self.sock[0] == pid: return self.sock[1] try: self.sock = (pid, self.sockets.pop()) except IndexError: self.sock = (pid, self.socket_factory()) return self.sock[1] def return_socket(self): if self.sock is not None and self.sock[0] == os.getpid(): # There's a race condition here, but we deliberately # ignore it. It means that if the pool_size is 10 we # might actually keep slightly more than that. if len(self.sockets) < self.pool_size: self.sockets.append(self.sock[1]) else: self.sock[1].close() self.sock = None pymongo.connection._Pool = GPool

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• Hybrid EAV/CR model via WCF (and statically-typed language)?

  - by Pat

  Background I'm working on the architecture for a cloud-based LOB application, using Silverlight for the client, WCF, ASP.NET/C# for server and SQL Server for storage. The data model requires some flexibility per user (ability to add custom properties and define validation rules for them, for example), and a hybrid EAV/CR persistence model on the server side will suit nicely. Problem I need an efficient and maintainable technology and approach to handle the transformation from the persisted EAV model to/from WCF (and similarly allow the client to bind to the resulting data - DataGrid is a key UI element)? Admission: I don't yet know enough about WCF to understand if it supports ExpandoObject directly, but I suspect it will. Options I started off looking at WCF RIA services, but quickly discovered they're heavily dependent upon both static type data and compile-time code generation. Neither of these appeal. The options I'm considering include: Using WCF RIA services and pass the data over the network directly in EAV form (i.e. Dictionary), and handle the binding issue purely on the client side (like this) Using a dynamic language (probably IronPython) to handle both ends of the communication, with plumbing to generate the necessary CLR type data on the client to allow binding, and transform to/from EAV form on the server (spam preventer stopped me from posting a URL here, I'll try it in a comment). Dynamic LINQ (CreateClass() and friends), although I'm way out of my depth there and don't know what the limitations on that approach might be yet. I'm interested in comments on these approaches as well as alternative approaches that might solve the problem. Other Notes The Silverlight client will not be the only consumer of the service, making me slightly uncomfortable with option #1 above. While the data model is flexible, it's not expected to be modified heavily. For argument's sake, we could assume that we might have 25 distinct data models active at a given time, with something like 10-20 unique data fields/rules each. Modifications to the data model will happen infrequently (typically when a new user is initially configured).

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• Using MongoDB's map/reduce to "group by" two fields

  - by ibz

  I need something slightly more complex than the examples in the MongoDB docs and I can't seem to be able to wrap my head around it. Say I have a collection of objects of the form {date: "2010-10-10", type: "EVENT_TYPE_1", user_id: 123, ...} Now I want to get something similar to a SQL GROUP BY query, grouping over both date and type. That is, I want the number of events of each type in each day. Also, I'd like to make it unique by user_id, ie. if a user has more events in the same day, count it only once. I'm trying to do this with map/reduce. I do db.logs.mapReduce(function() { emit(this.type, 1); }, function(k, vals) { var total = 0; for (var i = 0; i < vals.length; i++) total += vals[i]; return total; }}) which nicely groups by type, but now, how can I group by date at the same time? Seems the key in emit() can't be an array (I thought about doing emit([this.date, this.type], 1)). Also, how can I ensure the per-user uniqueness? I'm just starting with MongoDB and I'm still having trouble grasping the basic concepts. Also, there is not much documentation available out there. Any help from more experienced users is appreciated. Thanks!

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• Perl cgi @INC different in shell and in http request

  - by pistacchio

  Hi to all, I have the follwing, simplest per cgi script: use strict; use warnings; use CGI(); use CGI::Carp qw(fatalsToBrowser); use Template; print CGI::header(); foreach(@INC) { print "$_\n"; } When called (http://[..]/cgi-bin/p.cgi) I am given the following error: Can't locate Template.pm in @INC (@INC contains: /usr/lib/perl5/site_perl/5.8.8/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.8/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.8/i386-linux-thread-multi /usr/lib/perl5/5.8.8 .) at /home/pistacchio/webapps/htdocs/cgi-bin/p.cgi line 8. BEGIN failed--compilation aborted at /home/pistacchio/webapps/htdocs/cgi-bin/p.cgi line 8. I made sure that Template is installed and indeed when running this program from shell it works (loads Template) and outputs: Content-Type: text/html; charset=ISO-8859-1 /home/pistacchio/lib/perl5 /home/pistacchio/lib/perl5/lib/i386-linux-thread-multi /home/pistacchio/lib/perl5/lib /home/pistacchio/lib/perl5/lib/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.8/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.8/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.8/i386-linux-thread-multi /usr/lib/perl5/5.8.8 Template is installed in /home/pistacchio/lib/perl5/lib/i386-linux-thread-multi [pistacchio@web118 i386-linux-thread-multi]$ pwd /home/pistacchio/lib/perl5/lib/i386-linux-thread-multi [pistacchio@web118 i386-linux-thread-multi]$ ls auto perllocal.pod Template Template.pm This directory is correctly listed in env and, as previously posted, in @INC. In @INC it is shown twice, so I even tried to pop it out before calling use Template, but without result. From env: [pistacchio@web118 i386-linux-thread-multi]$ env [..] PERL5LIB=/home/pistacchio/lib/perl5:/home/pistacchio/lib/perl5/lib:/home/pistacchio/lib/perl5/lib/i386-linux-thread-multi [..] Removing use Template gets rid of the problem. Can anybody help?

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• IIS6 compressing static files, but not JSON requests

  - by user500038

  I have IIS6 compression setup, and static content is being compressed correctly as per Coding Horror. Example of a static file: Response Headers Content-Length 55513 Content-Type application/x-javascript Content-Encoding gzip Last-Modified Mon, 20 Dec 2010 15:31:58 GMT Accept-Ranges bytes Vary Accept-Encoding Server Microsoft-IIS/6.0 X-Powered-By ASP.NET Date Wed, 29 Dec 2010 16:37:23 GMT Request Headers Accept */* Accept-Language en-us,en;q=0.5 Accept-Encoding gzip,deflate Accept-Charset ISO-8859-1,utf-8;q=0.7,*;q=0.7 Keep-Alive 115 Connection keep-alive As you can see, the response is correctly compressed. However with a JSON call you'll see the request with the gzip parameter correctly set: Accept application/json, text/javascript, */*; q=0.01 Accept-Language en-us,en;q=0.5 Accept-Encoding gzip,deflate Accept-Charset ISO-8859-1,utf-8;q=0.7,*;q=0.7 Keep-Alive 115 Connection keep-alive X-Requested-With XMLHttpRequest Then for the response: Cache-Control private Content-Length 6811 Content-Type application/json; charset=utf-8 Server Microsoft-IIS/6.0 X-Powered-By ASP.NET X-AspNet-Version 2.0.50727 X-AspNetMvc-Version 2.0 No gzip! I found this article by Rick Stahl, which outlines how to compress in your code, but I'd like IIS to handle this. Is this possible with IIS6?

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• How do I create a good evaluation function for a new board game?

  - by A. Rex

  I write programs to play board game variants sometimes. The basic strategy is standard alpha-beta pruning or similar searches, sometimes augmented by the usual approaches to endgames or openings. I've mostly played around with chess variants, so when it comes time to pick my evaluation function, I use a basic chess evaluation function. However, now I am writing a program to play a completely new board game. How do I choose a good or even decent evaluation function? The main challenges are that the same pieces are always on the board, so a usual material function won't change based on position, and the game has been played less than a thousand times or so, so humans don't necessarily play it enough well yet to give insight. (PS. I considered a MoGo approach, but random games aren't likely to terminate.) Any ideas? Game details: The game is played on a 10-by-10 board with a fixed six pieces per side. The pieces have certain movement rules, and interact in certain ways, but no piece is ever captured. The goal of the game is to have enough of your pieces in certain special squares on the board. The goal of the computer program is to provide a player which is competitive with or better than current human players.

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• Vim, LaTeX, word-wrapping, and version control

  - by Bkkbrad

  I'm writing a LaTeX document in vim, and I have it hard wrapping at 80 characters to make reading easier. However, this causes problems with tracking changes with in version control. For example, inserting "Lorem ipsum" at the beginning of this text: 1 Dolor sit amet, consectetur adipiscing elit. Phasellus bibendum lobortis lectus 2 quis porta. Aenean vestibulum magna vel purus laoreet at molestie massa 3 suscipit. Vestibulum vestibulum, mauris nec convallis ultrices, tellus sapien 4 ullamcorper elit, dignissim consectetur justo tellus et nunc. results in: 1 Lorum ipsum dolor sit amet, consectetur adipiscing elit. Phasellus bibendum 2 lobortis lectus quis porta. Aenean vestibulum magna vel purus laoreet at 3 molestie massa suscipit. Vestibulum vestibulum, mauris nec convallis ultrices, 4 tellus sapien ullamcorper elit, dignissim consectetur justo tellus et nunc. When I review this change in git, it tells me that all the lines of the paragraph have changed because of the wrapping, even though only one semantic change has occurred. One way around this problem is to have every sentence on its own line. This looks the same in the rendered document, but the source now is harder to read, because each line has quite a different line length: 1 Lorum ipsum dolor sit amet, consectetur adipiscing elit. 2 Phasellus bibendum lobortis lectus quis porta. 3 Aenean vestibulum magna vel purus laoreet at molestie massa suscipit. 4 Vestibulum vestibulum, mauris nec convallis ultrices, tellus sapien ullamcorper elit, dignissim consectetur justo tellus et nunc. (If I soft wrap at 80, things still look bad, just in a different way.) Is it possible to have my text on disk with one newline per sentence, but display and edit it in vim as if the text of each paragraph was one long line, soft wrapped at 80 characters? I assume it requires some vim-foo rather than tweaking git or LaTeX.

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• jquery pagination plugin problem

  - by John the horn

  I am using a pagination plugin called "pagination". Here is the script that is initialized : function pageselectCallback(page_index, jq){ var new_content = jQuery('#hiddenresult div.result:eq('+page_index+')').clone(); $('#Searchresult').empty().append(new_content); return false; } /** * Initialisation function for pagination */ function initPagination() { // count entries inside the hidden content var num_entries = jQuery('#hiddenresult div.result').length; // Create content inside pagination element $("#Pagination").pagination(num_entries, { callback: pageselectCallback, items_per_page:1 // Show only one item per page }); } // When document is ready, initialize pagination $(document).ready(function(){ initPagination(); }); and I am using this script for accordation on the page : <script type="text/javascript"> $(document).ready(function(){ $('#content').show(); $('#content1').hide(); $('#content2').hide(); $('#content3').hide(); $('#content4').hide(); $('#content5').hide(); $('a.bucatarii_serie').click(function(){ $("div[id^='content']").hide(); $('#content').toggle('slow'); }); $('a.livinguri_serie').click(function(){ $("div[id^='content']").hide(); $('#content1').toggle('slow'); }); $('a.dormitoare_serie').click(function(){ $("div[id^='content']").hide(); $('#content2').toggle('slow'); }); $('a.tratamente').click(function(){ $("div[id^='content']").hide(); $('#content3').toggle('slow'); }); $('a.chirurgie').click(function(){ $("div[id^='content']").hide(); $('#content4').toggle('slow'); }); $('a.frizerie').click(function(){ $("div[id^='content']").hide(); $('#content5').toggle('slow'); }); }); </script> My problem is that I don't know how to implement multiple paginations on the same page in diferent containers but in a bigger container.

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• Rails - handling global site settings

  - by egarcia

  I'm developing a new rails application which is supposed to be installed several times in order to implement several sites. There are some things, like the "Site Title" or the "Default Number of Items per Page" that clearly belong to a "global settings" table / config file. I've made a list of the things I think I'll need: ActiveRecord model that is capable of: Storing different kinds of data. I suppose this would be accomplished encoding the values on a string on the db, probably with a "type" field. Indexing settings by name Validations based on a "type" attribute (i.e. don't accept invalid dates on "date" settings) Validations based on a allows_nil property. A controller that allows me to change settings via views. I'm pretty sure I could implement this myself, but I'm not willing to reinvent the wheel. I've done some searching, but I could only find rails-settings, which doesn't really serve me: I need a proper model & controller so I can use declarative-authorization, and it does not provide any controller or view facilities. Is there a gem or plugin out there that implements what I want, or any library I should look at? Thanks a lot.

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• Thinking Sphinx with Rails - Delta indexing seems to work fine for one model but not for the other

  - by hack3r

  I have 2 models User and Discussion. I have defined the indices for the models as below: For the User model: define_index do indexes email indexes first_name indexes last_name, :sortable => true indexes groups(:name), :as => :group_names has "IF(email_confirmed = true and status = 'approved', true, false)", :as => :approved_user, :type => :boolean has "IF(email_confirmed = true and (status = 'approved' or status='blocked'), true, false)", :as => :approved_or_blocked_user, :type => :boolean has points, :type => :integer has created_at, :type => :datetime has user(:id) set_property :delta => true end For the Discussion model: define_index do indexes title indexes description indexes category(:title), :as => :category_title indexes tags(:title), :as => :tag_title has "IF(publish_to_blog = true AND sticky = false, true, false)", :as => :publish_to_main, :type => :boolean has created_at has updated_at, :type => :datetime has recent_activity_at, :type => :datetime has views_count, :type => :integer has featured has publish_to_blog has sticky set_property :delta => true end I have added a delta column to both tables as per the documentation. My problem is that delta indexing works only for the Discussion model and not for the User model. For ex: When I update the 'title' of a discussion, I can see the thinking sphinx is rotating the indices etc. (as is evident from the logs). But when I update the 'first_name' or the 'last_name' of a user, nothing happens. The User model also has a has_many :through association through a model called GroupsUser. I have setup a after_save on the GroupsUser as follows: def set_user_delta_flag user.delta = true user.save end Even this doesn't seem to trigger delta indexing on the User model. A similar setup for the Discussion model works perfectly! Can anyone tell me why this is happening?

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• How do I specify Open ID Realm in spring security ?

  - by Salvin Francis

  We are using Spring security in our application with support for username / password based authentication as well as Open id based authentication. The issue is that google gives a different open id for the return url specified and we have at least 2 different entry points in our application from where open id is configured into our system. Hence we decided to use open id realm. http://blog.stackoverflow.com/2009/0...ue-per-domain/ http://groups.google.com/group/googl...unts-api?pli=1 how is it possible to integrate realm into our spring configuration/code ? This is how we are doing it in traditional openid library code: AuthRequest authReq = consumerManager.authenticate(discovered, someReturnToUrl,"http://www.example.com"); This works and gives same open id for different urls from our site. our configuration: Code: ... <http auto-config="false"> <!-- <intercept-url> tags are here --> <remember-me user-service-ref="someRememberedService" key="some key" /> <form-login login-page="/Login.html" authentication-failure-url="/Login.html?error=true" always-use-default-target="false" default-target-url="/MainPage.html"/> <openid-login authentication-failure-url="/Login.html?error=true" always-use-default-target="true" default-target-url="/MainPage.html" user-service-ref="someOpenIdUserService"/> </http> ... <beans:bean id="someOpenIdUserService" class="com.something.MyOpenIDUserDetailsService"> </beans:bean> <beans:bean id="openIdAuthenticationProvider" class="com.something.MyOpenIDAuthenticationProvider"> <custom-authentication-provider /> <beans:property name="userDetailsService" ref="someOpenIdUserService"/> </beans:bean> ...

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• How to design a RESTful collection resource?

  - by Suresh Kumar

  I am trying to design a "collection of items" resource. I need to support the following operations: Create the collection Remove the collection Add a single item to the collection Add multiple items to the collection Remove a single item from the collection Remove multiple items from the collection This is as far as I have gone: Create collection: ==> POST /service Host: www.myserver.com Content-Type: application/xml <collection name="items"> <item href="item1"/> <item href="item2"/> <item href="item3"/> </collection> <== 201 Created Location: http://myserver.com/service/items Content-Type: application/xml ... Remove collection: ==> DELETE /service/items <== 200 OK Removing a single item from the collection: ==> DELETE /service/items/item1 <== 200 OK However, I am finding supporting the other operations a bit tricky i.e. what methods can I use to: Add single or multiple items to the collection. (PUT doesn't seem to be right here as per HTTP 1.1 RFC Remove multiple items from the collection in one transaction. (DELETE doesn't seem to right here either)

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• Storing an object to use in multiple classes

  - by Aaron Sanders

  I am wondering the best way to store an object in memory that is used in a lot of classes throughout an application. Let me set up my problem for you: We have multiple databases, 1 per customer. We also have a master table and each row is detailed information about the databases such as database name, server IP it's located and a few config settings. I have an application that loops through those multiple databases and runs some updates on them. The settings I mentioned above are updated each loop iteration into memory. The application then runs through series of processes that include multiple classes using this data. The data never changes during the processes, only during the loop iteration. The variables are related to a customer, so I have them stored in a customer class. I suppose I could make all of the members shared or should I use a singleton for the customer class? I've never actually used a singleton, only read they are good in this type of situation. Are there better solutions to this type of scenario? Also, I could have plans for this application to be multithreaded later. Sorry if this is confusing. If you have questions, let me know and I will answer them. Thanks for your help.

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• NHibernate Child items query using Parent Id

  - by thorkia

  So I have a set up similar to this questions: Parent Child Setup Everything works great when saving the parent and the children. However, I seem to have a problem when selecting the children. I can't seem to get all the children with a specific parent. This fails with: NHibernate.QueryException: could not resolve property: ParentEntity_id of: Test.Data.ChildEntity Here is my code: public IEnumerable<ChildEntity> GetByParent(ParentEntity parent) { using (ISession session = OrmHelper.OpenSession()) { return session.CreateCriteria<ChildEntity>().Add(Restrictions.Eq("ParentEntity_id ", parent.Id)).List<ChildEntity>(); } } Any help in building a proper function to get all the items would be appreciated. Oh, I am using Fluent NHibernate to construct the mappings - version 1 RTM and NHibernate 2.1.2 GA If you need more information, let me know. As per you request, my fluent mappings: public ParentEntityMap() { Id(x => x.Id); Map(x => x.Name); Map(x => x.Code).UniqueKey("ukCode"); HasMany(x => x.ChildEntity).LazyLoad() .Inverse().Cascade.SaveUpdate(); } public ChildEntityMap() { Id(x => x.Id); Map(x => x.Amount); Map(x => x.LogTime); References(x => x.ParentEntity); } That maps to the following 2 tables: CREATE TABLE "ParentEntity" ( Id integer, Name TEXT, Code TEXT, primary key (Id), unique (Code) ) CREATE TABLE "ChildEntity" ( Id integer, Amount NUMERIC, LogTime DATETIME, ParentEntity_id INTEGER, primary key (Id) ) The data store in SQLite.

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• Sending series of images to display like a movie on iPhone

  - by unknownthreat

  Allow me to elaborate more. On the server, we will have a program that will take data from iPhone and process that data and produce series of images. Each time an image is generated, it will be send back to display on iPhone. I have done all of the things above using UDP, OpenGL, and such. It works. The images are transferred to iPhone and can be displayed, but it is slow. The image's resolution is around 320 x 420 and we send the image pixels by pixels. This naive implementation leads to a slow framerate. I can see around 2-3 frames per second. There are also some UDP packets dropped, and this is expected. Are there any sort of compression method available for something like this? Are there any other method that can make this better? NOTE: please don't just write "compression" as an answer, because we are aware that we will need to do it in some ways.

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• Windows Workflow Foundation: Recommendations how to design architecture

  - by Petr Felzmann

  We are running several the same ASP.NET applications (one per customer) based on our custom framework (libraries). Each application use its own database (Initial Catalog in the term of connection string). Now we would like to add workflow capability (of course 4.0 ;) to the applications. So the particular workflows will be the same for all the applications only some initial settings of each workflow can vary, e.g. in one application the e-mail will be send to the user X, but in other application to the user Y. I have several general questions how to design architecture: (1) Can be the workflow database shared for all the applications? (2) Where to host workflow engine - inside our custom windows NT service or inside IIS? What are the criteria to choose the right host? (3) How the workflow engine should communicate with applications? Should application call some WCF endpoint API configured in workflow host or vice verse - should each application provide WCF endpoint API and workflow engine will call it? How then the workflow engine will identify applications? Both cases requires probably some application identifier as a parameter in API calls? (4) We would like to also store some information to the application databases based on the workflow states. Is it possible? Thanks for suggestions!

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• How to associate static entity instances in a Session without database retrieval

  - by Michael Hedgpeth

  I have a simple Result class that used to be an Enum but has evolved into being its own class with its own table. public class Result { public static readonly Result Passed = new Result(StatusType.Passed) { Id = [Predefined] }; public static readonly Result NotRun = new Result(StatusType.NotRun) { Id = [Predefined] }; public static readonly Result Running = new Result(StatusType.Running) { Id = [Predefined] }; } Each of these predefined values has a row in the database at their predefined Guid Id. There is then a failed result that has an instance per failure: public class FailedResult : Result { public FailedResult(string description) : base(StatusType.Failed) { . . . } } I then have an entity that has a Result: public class Task { public Result Result { get; set; } } When I save a Task, if the Result is a predefined one, I want NHibernate to know that it doesn't need to save that to the database, nor does it need to fetch it from the database; I just want it to save by Id. The way I get around this is when I am setting up the session, I call a method to load the static entities: protected override void OnSessionOpened(ISession session) { LockStaticResults(session, Result.Passed, Result.NotRun, Result.Running); } private static void LockStaticResults(ISession session, params Result[] results) { foreach (var result in results) { session.Load(result, result.Id); } } The problem with the session.Load method call is it appears to be fetching to the database (something I don't want to do). How could I make this so it does not fetch the database, but trusts that my static (immutable) Result instances are both up to date and a part of the session?

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• FTP FileWatcher

  - by Meiscooldude

  So, I am in this little predicament where I am stuck watching a few ftp folders to see if they have new files added to them. If they do, it needs to throw an event with the file name. Thereby telling something else to download that file. This is a pretty simple object to make, I was just curious if anyone knew how expensive this operation would be? I plan on using the command NLIST because I don't need file size information, and there will be no sub-directories in the folder. Each file in the folder will have exactly 25 characters in its name. There could be anywhere from 10 to 'maybe' a couple thousand (max around 2000) files per folder (usually on the lower end, 100-300, but currently growing). The files are anywhere from 250kb to a very VERY unlikely 10mb (usually within the 250kb to 4mb range). There possibly could be up to a few hundred folders (in which case I could change the watch frequency depending on number of folders), but currently there are only a few (6-10ish). There also would be multiple logins for the ftp server, different logins would have access to different folders. I am not asking for an implementation, just if anyone has some first or second hand knowledge about FTP, how could this affect my network. I am not opposed to putting in file retention times or change the frequency in which I check for new files.

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• Fast, very lightweight algorithm for camera motion detection?

  - by Ertebolle

  I'm working on an augmented reality app for iPhone that involves a very processor-intensive object recognition algorithm (pushing the CPU at 100% it can get through maybe 5 frames per second), and in an effort to both save battery power and make the whole thing less "jittery" I'm trying to come up with a way to only run that object recognizer when the user is actually moving the camera around. My first thought was to simply use the iPhone's accelerometers / gyroscope, but in testing I found that very often people would move the iPhone at a consistent enough attitude and velocity that there wouldn't be any way to tell that it was still in motion. So that left the option of analyzing the actual video feed and detecting movement in that. I got OpenCV working and tried running their pyramidal Lucas-Kanade optical flow algorithm, which works well but seems to be almost as processor-intensive as my object recognizer - I can get it to an acceptable framerate if I lower the depth levels / downsample the image / track fewer points, but then accuracy suffers and it starts to miss some large movements and trigger on small hand-shaking-y ones. So my question is, is there another optical flow algorithm that's faster than Lucas-Kanade if I just want to detect the overall magnitude of camera movement? I don't need to track individual objects, I don't even need to know which direction the camera is moving, all I really need is a way to feed something two frames of video and have it tell me how far apart they are.

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• Problem with DSL and Business Rules creation in Drools

  - by jillika iyer

  Hi, I am using Eclipse with the Drools plugin to create rules. I want to create business rules and main aim is to try and provide the user a set of options which he can use to create rules. For eg:If an Apple can have only 3 colors: I want to provide an option like a drop down so that the user can know before hand which are the options he can use in his rules. Is it possible? I am creating a dsl but unable to still provide the above functionality for a business rule. I am having an error implementing a basic dsl also. The code to add the dsl is as follows in my RuleRunner class() InputStream ruleSource = RuleRunner.class.getClassLoader().getResourceAsStream("/Rule1.dslr"); InputStream dslSource = RuleRunner.class.getClassLoader().getResourceAsStream("/sample-dsl.dsl"); //Load the rules , using DSL addRulesToThisPackage.addPackageFromDrl( new InputStreamReader(ruleSource),new InputStreamReader(dslSource)); I have both the sample-dsl .dsl and Rule1.dslr in my working directory. Error encountered at adding the dsl to the package (last line) Error stack: Exception in thread "main" java.lang.NullPointerException at java.io.Reader.<init>(Unknown Source) at java.io.InputStreamReader.<init>(Unknown Source) at com.org.RuleRunner.loadRuleFile(RuleRunner.java:96) at com.org.RuleRunner.loadRules(RuleRunner.java:48) at com.org.RuleRunner.runStatelessRules(RuleRunner.java:109) at com.org.RulesTest.main(RulesTest.java:41) my dsl file has basic mapping as per the online documentations. The dsl rule I created is: expander sample-dsl.dsl rule "A status changes B status" when There is an A - has an address There is a B - has name then - print updated A and Aaddress End I have created DSL in eclipse. Is the code I added for it to be loaded to my package correct?? Or am I missing something???? It seems like my program is unable to find the dsl? Please help. Can you point me towards the right direction to create a user friendly business rule ?? Thanks. J

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• How to store a list in a column of a database table.

  - by John Berryman

  Howdy! So, per Mehrdad's answer to a related question, I get it that a "proper" database table column doesn't store a list. Rather, you should create another table that effectively holds the elements of said list and then link to it directly or through a junction table. However, the type of list I want to create will be composed of unique items (unlike the linked question's fruit example). Furthermore, the items in my list are explicitly sorted - which means that if I stored the elements in another table, I'd have to sort them every time I accessed them. Finally, the list is basically atomic in that any time I wish to access the list, I will want to access the entire list rather than just a piece of it - so it seems silly to have to issue a database query to gather together pieces of the list. AKX's solution (linked above) is to serialize the list and store it in a binary column. But this also seems inconvenient because it means that I have to worry about serialization and deserialization. Is there any better solution? If there is no better solution, then why? It seems that this problem should come up from time to time. ... just a little more info to let you know where I'm coming from. As soon as I had just begun understanding SQL and databases in general, I was turned on to LINQ to SQL, and so now I'm a little spoiled because I expect to deal with my programming object model without having to think about how the objects are queried or stored in the database. Thanks All! John

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• C# reference collection for storing reference types

  - by ivo s

  I like to implement a collection (something like List<T>) which would hold all my objects that I have created in the entire life span of my application as if its an array of pointers in C++. The idea is that when my process starts I can use a central factory to create all objects and then periodically validate/invalidate their state. Basically I want to make sure that my process only deals with valid instances and I don't re-fetch information I already fetched from the database. So all my objects will basically be in one place - my collection. A cool thing I can do with this is avoid database calls to get data from the database if I already got it (even if I updated it after retrieval its still up-to-date if of course some other process didn't update it but that a different concern). I don't want to be calling new Customer("James Thomas"); again if I initted James Thomas already sometime in the past. Currently I will end up with multiple copies of the same object across the appdomain - some out of sync other in sync and even though I deal with this using timestamp field on the MSSQL server I'd like to keep only one copy per customer in my appdomain (if possible process would be better). I can't use regular collections like List or ArrayList for example because I cannot pass parameters by their real local reference to the their existing Add() methods where I'm creating them using ref so that's not to good I think. So how can this be implemented/can it be implemented at all ? A 'linked list' type of class with all methods working with ref & out params is what I'm thinking now but it may get ugly pretty quickly. Is there another way to implement such collection like RefList<T>.Add(ref T obj)? So bottom line is: I don't want re-create an object if I've already created it before during the entire application life unless I decide to re-create it explicitly (maybe its out-of-date or something so I have to fetch it again from the db). Is there alternatives maybe ?

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