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• CouchDB Errors: "undefined symbol: js_fgets" on Ubuntu 10.04

  - by MattEzell

  Hello, ServerFault Community. I have been wrestling with this problem for weeks without resolution and was hoping that someone here might be able to help. As indicated above, this is in Ubuntu 10.04 (x86) using CouchDB 0.11.0. I have build and installed CouchDB 0.11.0 from source. Everything with the dependencies and with the CouchDB install itself 'goes off without a hitch' - no errors or complaints in the configure, make or install... CouchDB seems to be running 'fine'. I can access Futon without issue and utilize all CouchDB functionality found in Futon... Unfortunately, when I attempt to use any shows/views for an installed Couch App, I get the above js_fgets error before terminal (and the Couch log) fills up with TONS of JSON. Nothing ever renders in the browser, though Firebugs reports. I have used the official instructions (paying special attention to the 10.04 instructions) and have followed pretty much every Google thread that I can find on similar issues. I have chase SpiderMonkey (and Rhino) as well as Erlang as the culprit, but despite reinstalls and tests with these components, I still cannot get past this CouchDB issue on my system... Ideas? Pointers? Suggestions? Has anyone successfully installed and used CouchDB 0.11.0 on an Ubuntu 10.04 system to RUN APPLICATIONS? I have come across multiple individuals who immediately respond 'yes, I have it installed - it works great' only to have them realize in the end (as I did) that just because Futon thinks things are working, doesn't mean CouchDB is properly handling ALL requests. Thank you for your time and assistance!

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• Computer locking up, looking for bootable hardware diagnostic tool.

  - by Carl Menke

  Well today I helped my friend build a computer. All went pretty well until we got to installing Win7. Thing is, we thought, it was crashing constantly. I adjusted pretty much every setting in the BIOS and removed as much hardware as possible to try and prevent a crash. No dice. So far I've tried running an Ubuntu live cd without the harddrive installed. Nope, crashed on boot. And then I just tried Microsoft's ram utility disk and it eventually locked up on that (the ram passed though). So it seems to me like it's either the CPU (AMD PhenomII x3) or the motherboard that could be bad, but I don't know how to test them individually for problems. I thought it could be a overheating issue, but the BIOS reports that the CPU temp is fine idling around 34C. Any advice or diagnostic disk that could help me out? TL;DR: Computer locks up frequently during use (cannot even boot/install an operating system), memory is fine, probably CPU or Mobo, BIOS says CPU temps are fine. What should I try?

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• JSP Content Issue in Tomcat

  - by gautam vegeta

  There is one application where I work where there are still manual builds used i.e manually moving the servlet classes and jsp files from Dev to QA and finally to Prod. This is the method used in this application which cant be changed for some wierd reasons.BTW this is not the problem. We did a manual build where we transferred jsp files from QA to PROD recently. And we noticed that the jsp file content does not correspond to the updated jsp's but have the same content to the jsp file which was present in the server prior to the deployment. We did not re-start tomcat since jsp files upon updation automatically changes its contents. This problem persisted even after 6 hours of deployment If we consider the time standards which are different which may cause some delay. So to fix this we had to individually go into every jsp file and just type something save it and delete this change and save it.Then it worked perfectly. But finally the jsp file content before and after was never changed we just did this to change the modification date. If we think in terms of timestamp problem how can this be possible coz the old jsp files which were present in the server prior to deployment was atlest one month old and the ones getting deployed were defenitely newer than that. Why did this happen? This did not happen when we did same type of deployments earlier. How can we prevent this from happening in the future.

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• What do I need to consider when buying hardware to meet my needs?

  - by Darth Android

  I'm looking to build a new computer from the ground up. I'm not sure what to look out for and need guidance and help on how to pick the hardware needed to construct my new rig. How do I know what to buy? How do I find out if a given CPU will be enough for a certain game or application that I want to run? How do I find out if a given graphics card will be enough for a certain game or application? What is important when looking at motherboards? How much memory do I need? How do I know how much wattage I need for a power supply? What size case do I need? What relevant standards do I need to read up on and be aware of? PCI, PCIe, SATA, USB 2.0, USB 3.0, etc... What "gotchas" do I need to be on the lookout for? Please keep responses generation-agnostic to ensure they will be helpful to our future users. While Stack Exchange does not permit shopping recommendations, it doesn't provide any general advice to consider when buying hardware. So, instead of just telling those that ask what to buy that it's not allowed, let's tell them how to figure out what they need. This question was Super User Question of the Week #20 Read the June 20, 2011 blog entry for more details or submit your own Question of the Week.

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• Hosting websites in our Workplace custom-built datacentre

  - by i.h4d35

  I'm faced with unique learning opportunity at work at the moment. Due to the slowdown (amongst other reasons), the powers that be at my office have decided to abandon our shared hosting providers (both shared and dedicated hosting) and have decided to host the websites at our office's datacentre. We're running 7 websites, wherein the average unique hits per day at the moment is about 900. We have 2 servers set aside for this - one is a DELL POWER EDGE 1850 (Intel Xeon 3 GHZ*2, 4GB RAM, 73GB HDD and the other is an HP DL 380 G3 (Intel Xeon 2.8 GHz, 6 GB RAM, 73 GB HDD) a) I would like to know the pros and cons of going ahead with this project.All the sites will be hosted on a single IP. In all probability, the OS is going to be CentOS. b) Do you think I should consider Virtualization into this equation (KVM/Xen)? I was thinking in terms of separate instances of the DB server and the frontend though I do not know if this is the best way to go. c) Should I be trying to use cloud stacks like OpenStack and try to make it look like websites hosted on some sort of Public Cloud? (something that I checked out here). Here is something else I came across, which looks similar to what needs to be done at our office. About the websites - Of the 7 websites, 4 are basic static websites which basically gives a whole lot of information about a few local institutions. The remaining 3 are local product-based websites developed in PHP wherein end user can view products and order them online. I am trying to take this as a learning experience wherein I can learn to build something from scratch and save the company a little something in the process. The migration needs to be completed by Easter so I guess it gives us some time (or am I being overly optimistic??). I am confused here and would appreciate all the help I can get. Thanks in advance.

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• installing lots of perl modules

  - by Colin Pickard

  Hi, I've been landed with the job of documenting how to install a very complicated application onto a clean server. Part of the application requires a lot of perl scripts, each of which seem to require lots of different perl modules. I don't know much about perl, and I only know one way to install the required modules. This means my documentation now looks this: Type each of these commands and accept all the defaults: sudo perl -MCPAN -e 'install JSON' sudo perl -MCPAN -e 'install Date::Simple' sudo perl -MCPAN -e 'install Log::Log4perl' sudo perl -MCPAN -e 'install Email::Simple' (.... continues for 2 more pages... ) Is there any way I can do all this one line like I can with aptitude i.e. Type the following command and go get a coffee: sudo aptitude install openssh-server libapache2-mod-perl2 build-essential ... Thank you (on behalf of the long suffering people who will be reading my document) EDIT: The best way to do this is to use the packaged versions. For the modules which were not packaged for Ubuntu 10.10 I ended up with a little perl script which I found here ) #!/usr/bin/perl -w use CPANPLUS; use strict; CPANPLUS::Backend->new( conf => { prereqs => 1 } )->install( modules => [ qw( Date::Simple File::Slurp LWP::Simple MIME::Base64 MIME::Parser MIME::QuotedPrint ) ] ); This means I can put a nice one liner in my document: sudo perl installmodules.pl

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• Update Grub on Squeeze - Kernel downgrade due VMware Server

  - by vodoo_boot

  Hi! I happen to run into various problems regarding grub and kernels. I don't really care about the kernel internas. All I want is VMware server in that dedicated root-server. 1.) What is a bzImage vs. vmlinuz? kaze:~# ls /boot/ System.map-2.6.32-5-amd64 bzImage-2.6.33.2 config-2.6.33.2 initrd.img-2.6.32-5-amd64 System.map-2.6.33.2 bzImage-2.6.35.6 config-2.6.35.6 vmlinuz-2.6.32-5-amd64 System.map-2.6.35.6 config-2.6.32-5-amd64 grub I updated my menu.lst (grub2): timeout 5 default 0 fallback 1 title 2.6.32.5 kernel (hd0,1)/boot/vmlinuz-2.6.32-5-amd64 root=/dev/sda2 panic=60 noapic acpi=off title 2.6.35.6 kernel (hd0,1)/boot//bzImage-2.6.35.6 root=/dev/sda2 panic=60 noapic acpi=off title 2.6.32.3 kernel (hd0,1)/boot//bzImage-2.6.33.2 root=/dev/sda2 panic=60 noapic acpi=off That doesn't do well... I think the vmlinuz file is missing initrd or so. Dunno. In fact I don't give too much about kernel boot voodoo as long as it works. update-grub(2) does not work. Does anybody know what magical trick there is to get the 2.6.32-5 booting? 2.) I thought t follow the Deban wiki.. I cannot get header-files for the installed 35.6 or 33.2 kernel in the repositories. I cannot build foreign headers because they will not match the running kernel. So how does one deal with that situtation? I'd prefer not to have to downgrade the kernel. Thanks for any answers!

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• Easy_install the wrong version of python modules (Mac OS)

  - by user73250

  I installed Python 2.7 on my Mac. When typing "python" in terminal, it shows: $ python Python 2.7 (r27:82508, Jul 3 2010, 20:17:05) [GCC 4.0.1 (Apple Inc. build 5493)] on darwin Type "help", "copyright", "credits" or "license" for more information. The Python version is correct here. But when I try to easy_install some modules. The system will install the modules with python version 2.6 which are not able be imported to Python 2.7. And of course I can not do the functions I need in my code. Here's an example of easy_install graphy: $ easy_install graphy Searching for graphy Reading pypi.python.org/simple/graphy/ Reading http://code.Google.com/p/graphy/ Best match: Graphy 1.0.0 Downloading http://pypi.python.org/packages/source/G/Graphy/Graphy- 1.0.0.tar.gz#md5=390b4f9194d81d0590abac90c8b717e0 Processing Graphy-1.0.0.tar.gz Running Graphy-1.0.0/setup.py -q bdist_egg --dist-dir /var/folders/fH/fHwdy4WtHZOBytkg1nOv9E+++TI/-Tmp-/easy_install-cFL53r/Graphy-1.0.0/egg-dist-tmp-YtDCZU warning: no files found matching '*.tmpl' under directory 'graphy' warning: no files found matching '*.txt' under directory 'graphy' warning: no files found matching '*.h' under directory 'graphy' warning: no previously-included files matching '*.pyc' found under directory '.' warning: no previously-included files matching '*~' found under directory '.' warning: no previously-included files matching '*.aux' found under directory '.' zip_safe flag not set; analyzing archive contents... graphy.all_tests: module references __file__ Adding Graphy 1.0.0 to easy-install.pth file Installed /Library/Python/2.6/site-packages/Graphy-1.0.0-py2.6.egg Processing dependencies for graphy Finished processing dependencies for graphy So it installs graphy for Python 2.6. Can someone help me with it? I just want to set my default easy_install Python version to 2.7.

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• Creating a tar file with checksums included

  - by wazoox

  Here's my problem : I need to archive to tar files a lot ( up to 60 TB) of big files (usually 30 to 40 GB each). I would like to make checksums ( md5, sha1, whatever) of these files before archiving; however not reading every file twice (once for checksumming, twice for tar'ing) is more or less a necessity to achieve a very high archiving performance (LTO-4 wants 120 MB/s sustained, and the backup window is limited). So I'd need some way to read a file, feeding a checksumming tool on one side, and building a tar to tape on the other side, something along : tar cf - files | tee tarfile.tar | md5sum - Except that I don't want the checksum of the whole archive (this sample shell code does just this) but a checksum for each individual file in the archive. I've studied GNU tar, Pax, Star options. I've looked at the source from Archive::Tar. I see no obvious way to achieve this. It looks like I'll have to hand-build something in C or similar to achieve what I need. Perl/Python/etc simply won't cut it performance-wise, and the various tar programs miss the necessary "plugin architecture". Does anyone know of any existing solution to this before I start code-churning ?

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• Karmic iptables missing kernel moduyles on OpenVZ container

  - by luison

  After an unsuccessful p2v migration of my Ubuntu server to an OpenVZ container which I am stack with I thought I would give a try to a reinstall based on a clean OpenVZ template for Ubuntu 9.10 (from the OpenVZ wiki) When I try to load my iptables rules on the VM machine I've been getting errors which I believe are related to kernel modules not being loaded on the VM from the /vz/XXX.conf template model. I've been testing with a few post I've found but I was stack with the error: WARNING: Deprecated config file /etc/modprobe.conf, all config files belong into /etc/modprobe.d/. FATAL: Could not load /lib/modules/2.6.24-10-pve/modules.dep: No such file or directory iptables-restore v1.4.4: iptables-restore: unable to initialize table 'raw' Error occurred at line: 2 Try `iptables-restore -h' or 'iptables-restore --help' for more information. I read about the template not loading all iptables modules so I added modules to the XXX.conf of the VZ virtual machine like this: IPTABLES="ip_tables iptable_filter iptable_mangle ipt_limit ipt_multiport ipt_tos ipt_TOS ipt_REJECT ipt_TCPMSS ipt_tcpmss ipt_ttl ipt_LOG ipt_length ip_conntrack ip_conntrack_ftp ip_conntrack_irc ipt_conntrack ipt_state ipt_helper iptable_nat ip_nat_ftp ip_nat_irc" As the error remained I read that I should build dependencies again on the virtual machine: depmod -a but this returned an error: WARNING: Couldn't open directory /lib/modules/2.6.24-10-pve: No such file or directory FATAL: Could not open /lib/modules/2.6.24-10-pve/modules.dep.temp for writing: No such file or directory So I read again about creating the directory empty and redoing "depmod -a" it. I now don't get the dependancies error but get this and I don't have a clue how to proceed: WARNING: Deprecated config file /etc/modprobe.conf, all config files belong into /etc/modprobe.d/. FATAL: Module ip_tables not found. iptables-restore v1.4.4: iptables-restore: unable to initialize table 'raw' Error occurred at line: 2 Try `iptables-restore -h' or 'iptables-restore --help' for more information. I understand that iptables rules have to be different on the VM machine and perhaps some of the rules we are trying to apply (from our physical server) are not compatible but these are just source IP and destination port checks that I would like to be able to have available . I've heard that on the CentOS template there are no issues with this, so I understand is to do with VM config. Any help would be greatly appreciated.

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• Why do messenger keeps coming up when I adjust screen brightness?

  - by Asaf R

  My Dell Studio XPS 13 has a brightness up & down buttons (Fn + up arrow / down arrow), as do most laptops have. It's running Windows 7 64bit and I've installed Windows Live Messenger (build 14 and something) on it. When I hit Fn + down arrow, to reduce screen brightness, the Messenger window pops up. That's true whether it has been running in background (system tray / minimized) before or not. Note, to make messenger hide itself to the system tray, I've set it to Vista Compatibility mode. I don't think that has anything to do with it though, since if I shut compatibility mode off, the problem persists. There's a thread on the matter here, but with no solution. Thanks, Asaf SOLUTION: Stop Intellitype when using internal keyboard. See detailed howto here. EDIT: Some new findings on the matter - If I exit messenger entirely and restart (or simply stop) the service "Windows Live ID Sign-in Assistant" the problem is solved until I run messenger again. It persists even after entirely closing messenger, until I restart the said service. EDIT2: The above service "Windows Live ID Sign-in Assistant" actual name is wlidsvc. There's no shortcut defined for messenger, nor is there any other hot key in its preferences. EDIT3: I'm not sure if it's relates, but some of the Fn keys are not working - Fn + F1 doesn't put the machine to sleep, Fn + F3 doesn't show battery status. EDIT4: Problem probably relates to conflict with IntelliType Pro. See my answer below. Said conflict also causes Undo command when disabling Wireless (Wireless touch button), and other side effects for various keys.

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• Creating basic, redundant gigE or IB storage network for Xen?

  - by StaringSkyward

  With only a modest budget, I want to move my 4 xen servers over to network storage -either NFS or iSCSI which will be determined based on how well it performs when we test it (we need good throughput and it must continue to work through link and switch failure tests). We may add another couple of xen servers at some point when this is done. I don't know much about the design and operation of storage networks, so would really appreciate some hints from those with experience. The budget is around $3,800 excluding the storage appliance. I am currently thinking these are my options to remain on budget: 1) Go for used infiniband hardware and aim for 10gb performance. 2) Stick with gig ethernet and buy some new switches (cisco or procurve) to create a storage-only ethernet LAN. Upgrade to 10gigE later but try to use hardware capable of it where possible to reduce upgrade costs. I have seen used, warrantied infiniband switches at reasonable prices (presumably because big companies are converging on 10gbit ethernet?) and the promise of cheap 10gb is attractive. I know nothing about IB, so here come the questions: Can I buy 2 x switches and have multiple HBAs in my xen and storage nodes to get redundancy and increased performance without complexity or expensive management software costs? If so, can you point me to some examples? Do NFS and iSCSI work just the same regardless? Is IB a sensible choice or could/should I use ethernet or FC on the same budget - I'm keen not to get boxed into a corner for future upgrades, however. For the storage I am likely to build a storage server using nexentastor with the intention that I can later add more disks, SSDs and add another server to provide a failover option at the storage level. An HP LeftHand starter SAN is also under consideration, too. Thanks in advance.

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• What parts of a motherboard age, and how can I choose one with the longest possible life?

  - by Robert Harvey

  I have a home-built computer that's probably about four years old. I realize this probably seems ancient to some folks, but computers have no moving parts (except the fans), so theoretically they should last a long time, if I still have software to run on them. A few weeks ago, it began blue-screening and freezing up, with various error messages. It almost always happened about five minutes after startup. I assumed that the video card was overheating, since the cheap little fan on the heatsink died, so I replaced it. Long story short, after upgrading the video drivers a couple of times and performing some other troubleshooting, I remembered that the last time this happened, I took out the memory SIMS and cleaned the contacts with a gum eraser, so I did that again (noting that the SATA cables were very close to the chips on the SIMS). I re-routed the cables and reinstalled the SIMS. So far, so good; the machine has been trouble-free since. But blue-screens are distressing; I never know what bits are being chewed up in my OS installation when something like this happens. So I'm wondering if I'm choosing my components properly. If it matters, it's an Intel D915GAG motherboard and Corsair memory, but what I'm wondering is, should I be looking for certain characteristics when I choose these parts for my next computer, so that I can avoid this problem in my next build?

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• How to debug a kernel created using ubuntu-vm-builder?

  - by user265592

  Aim: Trying to perform a code walkthrough of what functions are getting called for sending and receiving packets over the network. I am building a kernel and using gdb for debugging/ tracing purposes. I have build a vm using the following command : time sudo ubuntu-vm-builder qemu precise --arch 'amd64' --mem '1024' --rootsize '4096' --swapsize '1024' --kernel-flavour 'generic' --hostname 'ubuntu' --components 'main' --name 'Bob' --user 'ubuntu' --pass 'ubuntu' --bridge 'br0' --libvirt 'qemu:///system' And I can run the VM successfully in qemu using the following command: qemu-system-x86_64 -smp 1 -drive file=tmpGgEOzK.qcow2 "$@" -net nic -net user -serial stdio -redir tcp:2222::22 Now, I want to debug the kernel using gdb. For this I need an executable with debug symbols(vmlinux), which apparently I don't have, as the vm-builder never asked for any such options and simply created a .qcow2 file. Question 1: Am I taking the correct approach to solve the problem and is there an easier way to do it? Question 2: Is there a way to debug this kernel using GDB? P.S: I don't have hardware support for KVM. Please correct me if I am wrong. Thanks.

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• Can't make nodejs mingw32: pkg-config can't find gnutils

  - by valya

  I'm trying to compile nodejs using MSYS, mingw32 on Windows 7-64 Valentin Golev@VALYASNOTEBOOK /home/Valentin_Golev/nodejs $ ./configure Checking for program CL : ok C:\Program Files (x86)\Microsoft V isual Studio 10.0\VC\BIN\x86_amd64\CL.exe Checking for program CL : ok C:\Program Files (x86)\Microsoft V isual Studio 10.0\VC\BIN\CL.exe Checking for program CL : ok C:\Program Files (x86)\Microsoft V isual Studio 10.0\VC\BIN\amd64\CL.exe Checking for program CL : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\CL.exe Checking for program CL : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\CL.exe Checking for program CL : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\x86_amd64\CL.exe Checking for program CL : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\CL.exe Checking for program CL : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\amd64\CL.exe Checking for program CL : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\amd64\CL.exe Checking for program LINK : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\amd64\LINK.exe Checking for program LIB : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\amd64\LIB.exe Checking for program MT : ok C:\Program Files\\Microsoft SDKs\W indows\v6.0A\bin\x64\MT.exe Checking for program RC : ok C:\Program Files\\Microsoft SDKs\W indows\v6.0A\bin\x64\RC.exe Checking for msvc : ok Checking for msvc : ok Checking for library dl : not found Checking for library execinfo : not found Checking for gnutls >= 2.5.0 : fail --- libeio --- Checking for library pthread : not found Checking for function pthread_create : not found error: the configuration failed (see 'C:\\msys\\1.0\\home\\Valentin_Golev\\node js\\build\\config.log') I have gnutils built and installed! I've checked the config.log, and there was a command: pkg-config --errors-to-stdout --print-errors --atleast-version=2.5.0 gnutls I typed it in the console Valentin Golev@VALYASNOTEBOOK /home/Valentin_Golev/nodejs $ pkg-config --errors-to-stdout --print-errors --atleast-version=2.5.0 gnutls Package gnutls was not found in the pkg-config search path. Perhaps you should add the directory containing `gnutls.pc' to the PKG_CONFIG_PATH environment variable No package 'gnutls' found But, Valentin Golev@VALYASNOTEBOOK ~ $ $PKG_CONFIG_PATH sh: c:/msys/1.0/local/lib/pkgconfig: is a directory Valentin Golev@VALYASNOTEBOOK ~ $ cd $PKG_CONFIG_PATH Valentin Golev@VALYASNOTEBOOK /local/lib/pkgconfig $ ls gnutls-extra.pc gnutls.pc What am I doing wrong?

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• Is it possible/practical to install and run Linux on a USB flash drive?

  - by Graeme Donaldson

  I'm going to replace my old 2004 vintage desktop PC soon and I have an idea of what I want to do, I'm just not sure if it's possible or realistic. In the time since I built the old PC it has slowly become less used as a PC and more as a file server, so I figured I'd build a small file server which could also function as a router/DHCP/DNS/whatever box. The idea is to base it on an Atom system. I have my eye on the Intel D510MO for the moment. This supports 2 SATA disks, and I'd prefer to dedicate those to data storage. I'd like to install Ubuntu Server or maybe Debian on a 8/16GB USB flash drive. I have seen plenty of tutorials on how to perform an installation from a USB drive, but I can't seem to find any info on actually booting and running the OS from USB flash. Is this even possible? Is it practical? This box will mostly be used for: Making backups of mine and my wife's notebooks via LAN. Will use SMB or NFS for this. Digital media storage, which will be accessed by a Mede8er box with no storage of its own. I will most likely use NFS for this.

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• Setting up MongoDB in High Performance Computing LSF linux cluster

  - by Dnaiel

  I am trying to run mongo in a LSF cluster computing environment where I have no admin control. Our sysadmin installed mongodb, but it is not running. Any ideas on what should I ask the server admin to do for it to run? Or if I could run it locally? [node1382]allelix> mongod --dbpath /users/dnaiel/ma/mongodb/ Tue Oct 2 21:33:48 [initandlisten] MongoDB starting : pid=22436 port=27017 dbpath=/seq/epigenome01/allelix/ma/mongodb/ 64-bit host=node1382 Tue Oct 2 21:33:48 [initandlisten] Tue Oct 2 21:33:48 [initandlisten] ** WARNING: You are running on a NUMA machine. Tue Oct 2 21:33:48 [initandlisten] ** We suggest launching mongod like this to avoid performance problems: Tue Oct 2 21:33:48 [initandlisten] ** numactl --interleave=all mongod [other options] Tue Oct 2 21:33:48 [initandlisten] Tue Oct 2 21:33:48 [initandlisten] db version v2.2.0, pdfile version 4.5 Tue Oct 2 21:33:48 [initandlisten] git version: f5e83eae9cfbec7fb7a071321928f00d1b0c5207 Tue Oct 2 21:33:48 [initandlisten] build info: Linux ip-10-2-29-40 2.6.21.7-2.ec2.v1.2.fc8xen #1 SMP Fri Nov 20 17:48:28 EST 2009 x86_64 BOOST_LIB_VERSION=1_49 Tue Oct 2 21:33:48 [initandlisten] options: { dbpath: "/users/dnaiel/ma/mongodb/" } Tue Oct 2 21:33:48 [initandlisten] journal dir=users/dnaiel/ma/mongodb/journal Tue Oct 2 21:33:48 [initandlisten] recover begin Tue Oct 2 21:33:48 [initandlisten] info no lsn file in journal/ directory Tue Oct 2 21:33:48 [initandlisten] recover lsn: 0 Tue Oct 2 21:33:48 [initandlisten] recover /seq/epigenome01/allelix/ma/mongodb/journal/j._0 Tue Oct 2 21:33:48 [initandlisten] recover cleaning up Tue Oct 2 21:33:48 [initandlisten] removeJournalFiles Tue Oct 2 21:33:48 [initandlisten] recover done Tue Oct 2 21:33:48 [websvr] admin web console waiting for connections on port 28017 Tue Oct 2 21:33:48 [initandlisten] waiting for connections on port 27017 It basically waits forever and cannot start mongodb. These servers are not webservers but they do have network access, it's a cloud computing LSF environment system. Any advice would be welcome, thanks in advance.

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• Java web app deployment and ControlTier adoption

  - by Ran

  I've been searching for a configuration and deployment manager tool for my java-linux based web service and have been looking mainly at ControlTier (http://controltier.org). We operate at a medium scale (100's of hosts, multi-DC, dozens of services). There seem to be be plenty of lower level system admin tools such as chef, puppet, cfengine, bcfg2 and more and my understanding and the reason I'm calling them "low level" is that they are great for system level administration tasks such as setting up a mount, file permissions, users etc but aren't designed, for example for java deployments, which usually come with a build process and special java semantics. In many cases any tool can be used to do anything but if it was not designed for the task it can get uncomfortable. OTOH control-tier seem to have been designed just for that - java application deployments, at least that's what all the tutorials on their site demonstrate but here's the problem - The wiki at http://controltier.org/wiki/ is pretty good and stuffed with examples and the company behind the open source CT product is very responsive (pushy...) however, I'm yet to have seen any material from 3rd party users on the net. No success stories, no detailed blog posts, no best practices, no cheat sheets, not even hate letters, nothing. This plays badly for DTO solutions, CT's sponsor for two reasons, one is that it makes me suspicious what's the reason for the poor adoption? and second, what do I do if I get stuck and there's no help page on CT's wiki page and the mailing list is too slow to answer. I'm stuck with a "free" product that a consultancy company is pushing. So my question here - I'd be interested in hearing if anyone has had real world experience with CT for java based web app deployments and if he'd thumb up the product? Any other comments that may enlighten me are welcome of course...

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• FreeBSD ZFS RAID-Z2 performance issues

  - by Axel Gneiting

  I'm trying to build my own network attached storage based on FreeBSD+ZFS+standard components, but there are strange performance issues. The hardware specs are: AMD Athlon II X2 240e processor ASUS M4A78LT-M LE mainboard 2GiB Kingston ECC DDR3 (two sticks) Intel Pro/1000 CT PCIe network adapter 5x Western Digital Caviar Green 1.5TB I created a RAID-Z2 zpool from all disks. I installed FreeBSD 8.1 on that zpool following the tutorial. The SATA controllers are running in AHCI mode. Output of zpool status: pool: zroot state: ONLINE scrub: none requested config: NAME STATE READ WRITE CKSUM zroot ONLINE 0 0 0 raidz2 ONLINE 0 0 0 gptid/7ef815fc-eab6-11df-8ea4-001b2163266d ONLINE 0 0 0 gptid/80344432-eab6-11df-8ea4-001b2163266d ONLINE 0 0 0 gptid/81741ad9-eab6-11df-8ea4-001b2163266d ONLINE 0 0 0 gptid/824af5cb-eab6-11df-8ea4-001b2163266d ONLINE 0 0 0 gptid/82f98a65-eab6-11df-8ea4-001b2163266d ONLINE 0 0 0 The problem is that write performance on the pool is very very bad (<10 MB/s) and every application that is accessing the disk is unresponsive every few seconds when writing. It seems like writing is fine until the ZFS ark cache is full and then ZFS stalls the entire system I/O till it's finished writing that data. Also I'm getting kmem_malloc to small kernel panics. I've already tried to put vm.kmem_size="1500M" vm.kmem_size_max="1500M" into /boot/loader.conf, but it doesn't help. Does anyone know what's going on here? Am I really not having enough memory for ZFS to handle this RAID-Z2?

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• Utility to LOGICALLY compare two xml files?

  - by Matthew

  Right now we are attempting to build golden configurations for our environment. One piece of software that we use relies on large XML files to contain the bulk of its configuration. We want tot ake our lab environment, catalog it as our "golden configuration" and then be able to audit against that configuration in the future. Since diff is bytewise comparison and NOT logical comparison, we can't use it to compare files in this case (XML is unordered, so it won't work). What I am looking for is something that can parse the two XML files, and compare them element by element. So far we have yet to find any utilities that can do this. OS doesn't matter, I can do it on anything where it will work. The preference is something off the shelf. Any ideas? Edit: One issue we have run into is one vendor's config files will occasionally mention the same element several times, each time with different attributes. Whatever diff utility we use would need to be able to identify either the set of attributes or identify them all as part of one element. Tall order :)

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• "Error: Unknown error" when trying to start virtual machine from VMware server

  - by slhck

  Problem We are running VMware Server 2.0.0 build-116503 on a Ubuntu 10.04 LTS server. There is a virtual machine installed, running Lotus Domino on Windows Server 2003. Ever since a sudden power failure last week, the virtual machine won't properly start up. When I run the command: vmrun -T server -h https://127.0.0.1:8333/sdk -u root -p jk2x2208 start "[standard] lotus/test.vmx" … after 30 seconds it displays: Error: Unknown error That's about everything I get. I know the command is right, since that's what we've used all the time. This has happened last Saturday after a scheduled backup shutdown, and somehow I was able to start it again. This week, it happened again, and I can't get it back up. Occasionally, I also get: Error: Cannot connect to the virtual machine When I get this, and I run the start command, it seemingly works. Why is this so random? Which configuration could have been messed up? What I've tried / other info I already shut down VMware itself with /etc/init.d/vmware stop. This works. I tried to start VMware again with /etc/init.d/vmware start. It complains that it's "not configured", which is why I had to rm /etc/vmware/not_configured, and then try to start again. There have been no software updates on the machine, and no configuration changes

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• Merging cuesheet chapter halves into single track for an audiobook

  - by TheSavo

  I have an audiobook that I have ripped and I need some help constructing chapters. I have already made some cue sheets TITLE "Bookname" PERFORMER "the Author" FILE "File1.FLAC" wave ; 23971906.667 milliseconds TRACK 01 AUDIO TITLE "_Intro" INDEX 01 00:00:00 TRACK 02 AUDIO TITLE "CH 01" INDEX 01 24:15:50 TRACK 03 AUDIO TITLE "CH 02" INDEX 01 66:21:00 TRACK 04 AUDIO TITLE "CH 03" INDEX 01 87:05:00 The audio book is in two files. The chapter at the end of the first file is continued in the second file. However, the second file restates: The publisher Book Title List item Blah blah blah I would like to merge the two 'halves' of the chapter in one seamless track. The only way I can think to do this would be be: Bulk cut down the tracks. Drop the junk info into junk track Continue the track listings as normal Take the two "halves" of the target chapter and build a separate cue sheet for it. I know there has to be an easier way. I am ok with making the 'junk' info a 'gap' or something. These are are FLAC files that will be converted to MP3 for my phone and other potable devices. I have read the primers on cue sheets, but I am just not getting it.

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• Cannot start Postgres daemon after installing with Yum

  - by Sean the Bean

  I was trying to install Postgres 9.1.4 on Fedora 17 using Yum. If I do: sudo yum install postgres-libs sudo yum install postgres sudo yum install postgis All the installs appear to complete successfully (i.e., no errors), but I cannot start the Postgres daemon using: service postgresql initdb Like the official Postgres download guide says to do (http://www.postgresql.org/download/linux/redhat/). The error says Unknown operation initdb. RPM tells me that it installed psql to /usr/bin/, which I confirmed. It turns out that only a few components installed correctly (psql, pg_dump, pg_configure, and a few others), but most are missing (e.g., pg_ctl and postgres). I've tried several different configurations and had several of my coworkers (with more linux experience than me) look at it, but so far nothing has worked. Two of them have also run into similar issues installing Postgres using apt-get on Ubuntu, which makes me think the rpm isn't doing its job. It seems the only solution to build it from source, which is more robust anyway, but of course it takes longer. I'm wondering, though, if anyone else has run into this issue and/or has successfully installed Postgres on either Fedora or Ubuntu using a package manager like yum or apt-get? Is the rpm broken?

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• Booting Debian5 (Lenny) on 2.6.16 Kernel

  - by bk

  Due to a proprietary kernel module that I don't have the source to and is very picky about what kernel versions it will load into (even with modprobe --f), I find myself in need of running a 2.6.16.XX kernel on my Debian5 machine. The machine boots fine with the 2.6.26-2 stock kernel, and I have successfully build and booted 2.6.26 and 2.6.31 based kernels by making a .deb and the ndoing dpkg -i. However, when I do the same approach for 2.6.16, the kernel hangs at boot. I'm testing this in a VMWare image, so I don't think its an issue of newer hardware not supported by the older kernel. For a working kernel, at boot I get: Uncompressing Linux.. OK booting the kernel Loading, please wait... mdadm: No devices listed in the conf file were found kinit name_to_dev_t /dev/hda5 (dev5,3) ... With 2.6.16.60, I never get the kinit message. It hangs after the mdadm line. There are no mdadm arrays on this machine, so I doubt its an issue inside the mdadm stuff, which is supposed to just error out as it does in the 2.6.26 case above, but for some reason I'm getting stuck getting into kinit. I've been banging my head against this wall so I'm very open to suggestions on how to go about troubleshooting this.

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• port forwarding with socks over proxy

  - by Oz123

  I am trying to browse a wiki that runs on a server inside one domain from another domain. The wiki is accessible only on the LAN, but I need to browse it from another LAN to which I connect with an SSH tunnel ... Here is my setup and the steps I did so far: ~.ssh/confing on wikihost: Host gateway User kisteuser Port 443 Hostname gateway.companydomain.com ProxyCommand /home/myuser/bin/ssh-https-tunnel %h %p # ssh-https-tunnel: # http://ttcplinux.sourceforge.net/tools/stunnel Protocol 2 IdentityFile ~/.ssh/key_dsa LocalForward 11069 localhost:11069 Host server1 User kisteuser Hostname localhost Port 11069 LocalForward 8022 server1:22 LocalForward 17001 server1:7100 LocalForward 8080 www-proxy:3128 RemoteForward 11069 localhost:22 from wikihost myuser@wikihost: ssh -XC -t gateway.companydomain.com ssh -L11069:localhost:22 server1 on another terminal: ssh gateway.companydomain.com Now, on my companydomain I would like to start firefox and browse the wiki on wikihost. I did: [email protected] ~ $ ssh gateway Have a lot of fun... kisteuser@gateway ~ $ ssh -D 8383 localhost user@localhost's password: user@wikiserver:~> My .ssh/config on that side looks like that: host server1 localforward 11069 localhost:11069 host localhost user myuser port 11069 host wikiserver forwardagent yes user myuser port 11069 hostname localhost Now, I started firefox on the server called gateway, and edited the proxy settings to use SOCKSv5, specifying that the proxy should be gateway and use the port 8383... kisteuser@gateway ~ $ LANG=C firefox -P --no-remote And, now I get the following error popping in the Terminal of wikiserver: myuser@wikiserver:~> channel 3: open failed: connect failed: Connection refused channel 3: open failed: connect failed: Connection refused channel 3: open failed: connect failed: Connection refused Confused? Me too ... Please help me understand how to properly build the tunnels and browse the wiki over SOCKS protocol. update: I managed to browse the wiki on wikiserver with the following changes: host wikiserver forwardagent yes user myuser port 11069 hostname localhost localforward 8339 localhost:8443 Now when I ssh gateway I launch Firefox and go to localhost:8339 and I hit the start page of the wiki, which is served on Port 8443. Now I ask myself is SOCKS really needed? Can someone elaborate on that ?

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