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  • How can I make the output from tapply() into a data.frame

    - by James Thompson
    I have a data.frame in R that looks like this: score rms template aln_id description 1 -261.410 4.951 2f22A.pdb 2F22A_1 S_00001_0000002_0 2 -231.987 21.813 1wb9A.pdb 1WB9A_4 S_00002_0000002_0 3 -263.722 4.903 2f22A.pdb 2F22A_3 S_00003_0000002_0 4 -269.681 17.732 1wbbA.pdb 1WBBA_6 S_00004_0000002_0 5 -258.621 19.098 1rxqA.pdb 1RXQA_3 S_00005_0000002_0 6 -246.805 6.889 1rxqA.pdb 1RXQA_15 S_00006_0000002_0 7 -281.300 16.262 1wbdA.pdb 1WBDA_11 S_00007_0000002_0 8 -271.666 4.193 2f22A.pdb 2F22A_2 S_00008_0000002_0 9 -277.964 13.066 1wb9A.pdb 1WB9A_5 S_00009_0000002_0 10 -261.024 17.153 1yy9A.pdb 1YY9A_2 S_00001_0000003_0 I can calculate summary statistics on the data.frame like this: > tapply( d$score, d$template, mean ) 1rxqA.pdb 1wb9A.pdb 1wbbA.pdb 1wbdA.pdb 1yy9A.pdb 2f22A.pdb -252.7130 -254.9755 -269.6810 -281.3000 -261.0240 -265.5993 Is there an easy way that I coerce this output back into a data.frame? I'd like for it to have these two columns: d$template mean I love tapply, but right now I'm cutting and pasting the results from tapply into a text file and hacking it up a bit to get the summary statistics that I want with appropriate names. This feels very wrong, and I'd like to do something better!

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  • How do I return a variable from $.post() in jQuery? Closure variable?

    - by James Bao
    I am having trouble passing data retrieved from a $.post() function to use in other places in my code. I want to save the data as a variable and use it outside of the post() function. This is my code: var last_update = function() { $.post('/--/feed', {func:'latest', who:$.defaults.login}, function($j){ _j = JSON.parse($j); alert(_j.text); // This one works }); } alert(_j.text); // This one doesn't }; last_update(); //run the function Please help!

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  • Can I use encrypt web.config with a custom protection provider who's assembly is not in the GAC?

    - by James
    I have written a custom protected configuration provider for my web.config. When I try to encrypt my web.config with it I get the following error from aspnet_iisreg aspnet_regiis.exe -pef appSettings . -prov CustomProvider (This is running in my MSBuild) Could not load file or assembly 'MyCustomProviderNamespace' or one of its dependencies. The system cannot find the file specified. After checking with the Fusion log, I confirm it is checking both the GAC, and 'C:/WINNT/Microsoft.NET/Framework/v2.0.50727/' (the location of aspnet_iisreg). But it cannot find the provider. I do not want to move my component into the GAC, I want to leave the custom assembly in my ApplicationBase to copy around to various servers without having to pull/push from the GAC. Here is my provider configuration in the web.config. <configProtectedData> <providers> <add name="CustomProvider" type="MyCustomProviderNamespace.MyCustomProviderClass, MyCustomProviderNamespace" /> </providers> </configProtectedData> Has anyone got any ideas?

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  • acts-as-taggable-on: find tags with name LIKE, sort by tag_counts?

    - by James
    Hi I'm using the rails plugin acts-as-taggable-onand I'm trying to find the top 5 most used tags whose names match and partially match a given query. When I do User.skill_counts.order('count DESC').limit(5).where('name LIKE ?', params[:query]) This return the following error: ActiveRecord::StatementInvalid: SQLite3::SQLException: ambiguous column name: name: SELECT tags.*, COUNT(*) AS count FROM "tags" INNER JOIN users ON users.id = taggings.taggable_id LEFT OUTER JOIN taggings ON tags.id = taggings.tag_id AND taggings.context = 'skills' WHERE (taggings.taggable_type = 'User') AND (taggings.taggable_id IN(SELECT users.id FROM "users")) AND (name LIKE 'asd') GROUP BY tags.id, tags.name HAVING COUNT(*) > 0 ORDER BY count DESC LIMIT 5 But when I do User.skill_counts.first.name this returns "alliteration" I'd appreciate any help on this matter.

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  • finding N contiguous zero bits in an integer to the left of the MSB from another

    - by James Morris
    First we find the MSB of the first integer, and then try to find a region of N contiguous zero bits within the second number which is to the left of the MSB from the first integer. Here is the C code for my solution: typedef unsigned int t; unsigned const t_bits = sizeof(t) * CHAR_BIT; _Bool test_fit_within_left_of_msb( unsigned width, t val1, t val2, unsigned* offset_result) { unsigned offbit = 0; unsigned msb = 0; t mask; t b; while(val1 >>= 1) ++msb; while(offbit + width < t_bits - msb) { mask = (((t)1 << width) - 1) << (t_bits - width - offbit); b = val2 & mask; if (!b) { *offset_result = offbit; return true; } if (offbit++) /* this conditional bothers me! */ b <<= offbit - 1; while(b <<= 1) offbit++; } return false; } Aside from faster ways of finding the MSB of the first integer, the commented test for a zero offbit seems a bit extraneous, but necessary to skip the highest bit of type t if it is set. I have also implemented similar algorithms but working to the right of the MSB of the first number, so they don't require this seemingly extra condition. How can I get rid of this extra condition, or even, are there far more optimal solutions?

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  • sqlite3.OperationalError: database is locked - non-threaded application

    - by James C
    Hi, I have a Python application which throws the standard sqlite3.OperationalError: database is locked error. I have looked around the internet and could not find any solution which worked (please note that there is no multiprocesses/threading going on, and as you can see I have tried raising the timeout parameter). The sqlite file is stored on the local hard drive. The following function is one of many which accesses the sqlite database, and runs fine the first time it is called, but throws the above error the second time it is called (it is called as part of a for loop in another function): def update_index(filepath): path = get_setting('Local', 'web') stat = os.stat(filepath) modified = stat.st_mtime index_file = get_setting('Local', 'index') connection = sqlite3.connect(index_file, 30) cursor = connection.cursor() head, tail = os.path.split(filepath) cursor.execute('UPDATE hwlive SET date=? WHERE path=? AND name=?;', (modified, head, tail)) connection.commit() connection.close() Many thanks.

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  • Concatenate text files with Windows command line, dropping leading lines

    - by James
    I need to concatenate some relatively large text files, and would prefer to do this via the command line. Unfortunately I only have Windows, and cannot install new software. type file1.txt file2.txt > out.txt allows me to almost get what I want, but I don't want the 1st line of file2.txt to be included in out.txt. I have noticed that more has the +n option to specify a starting line, but I haven't managed to combine these to get the result I want. I'm aware that this may not be possible in Windows, and I can always edit out.txt by hand to get rid of the line, but is there a simple way of doing it from the command line?

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  • How to structure this Symfony web project?

    - by James William
    I am new to Symfony and am not sure how to best structure my web project. The solution must accommodate 3 use cases: Public access to www.mydomain.com for general use Member only access to member.mydomain.com Administrator access to admin.mydomain.com All three virtual hosts point to the Symfony /web directory Questions: Is this 3 separate applications in my Symfony project (e.g. "frontend", "backend" and "admin" or "public", "member", "admin")? Is this a good approach if there is to be some duplicate code (e.g. generating a member list would be common across all 3 applications, but presented differently)? How would I route to the various applications based on the subdomain when a user accesses *.mydomain.com? Where in Symfony should this routing logic be placed? Or, is this one application with modules for each of the above use cases? EDIT: I do not have access to httpd.conf in apache to specify a default page for virtual hosts. I can only specify a directory for each subdomain using the hostin provider's cPanel.

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  • Rendering a CGPDFPage into a UIImage

    - by James Antrobus
    I'm trying to render a CGPDFPage (selected from a CGPDFDocument) into a UIImage to display on a view. I have the following code in MonoTouch which gets me part way there. RectangleF PDFRectangle = new RectangleF(0, 0, UIScreen.MainScreen.Bounds.Width, UIScreen.MainScreen.Bounds.Height); public override void ViewDidLoad () { UIGraphics.BeginImageContext(new SizeF(PDFRectangle.Width, PDFRectangle.Height)); CGContext context = UIGraphics.GetCurrentContext(); context.SaveState(); CGPDFDocument pdfDoc = CGPDFDocument.FromFile("test.pdf"); CGPDFPage pdfPage = pdfDoc.GetPage(1); context.DrawPDFPage(pdfPage); UIImage testImage = UIGraphics.GetImageFromCurrentImageContext(); pdfDoc.Dispose(); context.RestoreState(); UIImageView imageView = new UIImageView(testImage); UIGraphics.EndImageContext(); View.AddSubview(imageView); } A section of the CGPDFPage is displayed but rotated back-to-front and upside down. My question is, how do I select the full pdf page and flip it round to display correctly. I have seen a few examples using ScaleCTM and TranslateCTM but couldn't seem to get them working. Any examples in ObjectiveC are fine, I'll take all the help I can get :) Thanks

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  • Image rotate to mouse using Jquery and CSS

    - by James
    I have a compass image and am trying to get the needle to follow the mouse around the page, exactly how the images are rotated in the following demo but without having to shift and click. I'm having trouble breaking down that code however, so any help would be most appreciated. Thanks in advance. http://www.elated.com/res/File/articles/development/javascript/jquery/smooth-rotatable-images-css3-jquery/ The images are simply wrapped in a div <div id="content"> <img id="compass" src="compass.png"/> <img id="needle" src="needle.png"/> </div>

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  • Problem finding the difference in days between two dates

    - by James
    I have been using a tidy little routine that I found here to calculate the difference in days between two dates in AS3. I am getting some strange results and I am wondering if any of you inter-codal-mega-lords can shed some light? Why is Q1 of 2010 coming up one day short, when in all other cases the routine is performing fine? Many thanks in advance to anyone who can help! function countDays( startDate:Date, endDate:Date ):int { var oneDay:int = 24*60*60*1000; // hours*minutes*seconds*milliseconds var diffDays:int = Math.abs((startDate.getTime() - endDate.getTime())/(oneDay)); return diffDays; } countDays( new Date( 2010, 00, 01 ), new Date( 2011, 00, 01 ) ); // returns 365, which is correct countDays( new Date( 2010, 00, 01 ), new Date( 2010, 03, 01 ) ); // returns 89, which is 1 day short countDays( new Date( 2010, 03, 01 ), new Date( 2010, 06, 01 ) ); // returns 91, which is correct countDays( new Date( 2010, 06, 01 ), new Date( 2010, 09, 01 ) ); // returns 92, which is correct countDays( new Date( 2010, 09, 01 ), new Date( 2011, 00, 01 ) ); // returns 92, which is correct

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  • Java BufferedImage increase width

    - by James Moore
    Hello, I have managed to load in an image using: BufferedImage image = ImageIO.read(out); and place text over it however, I want the text to appear next to the image. How can I increase the image width on the right to allow for space for the text to be drawn on. Or do I have to create a new empty image and insert the existing one? Thanks

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  • How do I Convert ARGB value from string to colour?

    - by James
    I am trying to use the MakeColor method in the GDIPAPI unit but the conversion from int to byte is not returning me the correct value. Example var argbStr: string; A, R, G, B: Byte; begin argbStr := 'ffffcc88'; A := StrToInt('$' + Copy(AValue, 1, 2)); R := StrToInt('$' + Copy(AValue, 3, 2)); G := StrToInt('$' + Copy(AValue, 5, 2)); B := StrToInt('$' + Copy(AValue, 7, 2)); Result := MakeColor(A, R, G, B); end; What am I doing wrong?

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  • Adapting methods which return true/false

    - by James P.
    What's the best practise when adapting C-style functions which return a true/false to Java? Here's a simple method to illustrate where the problem lies. public static boolean fileNameEndsWithExtension( String filename, String fileExtension) { return filename.endsWith( fileExtension ); } Note that there's probably a more elegant way of filtering files (feel free to comment on this). Anyway, if filename is a null value, does one: Return a false if filename is null? If so, how does one go about distinguishing between the case where filename is null and the case where the String or file name doesn't end with a given file extension? Change the return type to the wrapper class Boolean which allows a null value. Throw an Exception and force the programmer to make sure that a null value is never passed to the method? Use another solution?

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  • How do you check to see if a variable has changed every second or less in objective c?

    - by James
    I am using an if statement to check the value of a BOOLEAN when i click on a button. When the button is clicked if the value is false i want to display a UIActivityIndicator and if the value is true i want to push the new view. I can do this fine but i want the view to change automatically when the BOOLEAN Becomes true if the user has already clicked the button. So my question is how do you check to see if a value has changed everysecond or less?

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  • AJAX Generated Select Won't Redirect

    - by James
    So, basically I have this select / drop down menu that I use AJAX to retrieve and create, though when an option is selected (so onChange) I want it to redirect! Though, this still isn't working, I don't get any errors thrown when trying, and tried to do alert() debug methods yet the alerts don't get called. jquery $("#schoolMenu").change(function() { option = $("#schoolMenu option:selected").text(); alert(option); if(option != "- Please Select -") { window.location = "http://www.itmustbecollege.com/pics/pics-from-"+$("#schoolMenu option:selected").val(); } }); This is what is used to call the AJAX // // Populate Schools // $("#state").change(function() { option = $("#state option:selected").text(); if($(this).attr("class") == "menu") { if(option != "- Please Select -") { $.ajax({ type: "GET", url: "/includes/functions.php", data: "f=school&p="+option+"&m=yes", success: function(msg) { $("#fSchool").html("<p style=\"margin-left: 20px;\">Select School:</p>"+ msg); $("#fSchool").show(); $("#school").focus(); } }); } else { $("#fSchool").html(""); $("#fSchool").hide(); } } else { if(option != "- Please Select -") { $.ajax({ type: "GET", url: "/includes/functions.php", data: "f=school&p="+option, success: function(msg) { $("#fSchool").html(msg); $("#fSchool").show(); $("#school").focus(); } }); } else { $("#fSchool").html(""); $("#fSchool").hide(); } } }); It loads perfectly, if you look at http://www.itmustbecollege.com/quotes/ on that bar where you can do "sort by" of Popular | Newest | Category | School if you hover over school a dropdown comes up, select any country and another one appears, though when that is changed nothing happens. here is the PHP for that second drop down // Get College List function getCollege($state, $m = "no", $l = "no") { // Displays Schools if($m == "yes") { $options = '<select id="schoolMenu" name="school"><option value="select" selected="selected">- Please Select -</option>'; } else if($l == "yes" || $l == "yes2") { $options = ''; } else { $options = '<select name="school"><option value="select" selected="selected">- Please Select -</option>'; } $listArray = split("\|\\\\", $list); for($i=0; $i < count($listArray); $i++) { if($m == "yes") { $options .= '<option value="'. trim(titleReplace($listArray[$i])) .'">'. trim($listArray[$i]) .'</option>'; } else if($l == "yes") { $options .= '<li><a href="/quotes/quotes-from-'. titleReplace($listArray[$i]) .'" title="'. trim($listArray[$i]) .' Quotes">'. trim($listArray[$i]) .'</a></li>'; } else if($l == "yes2") { $options .= '<li><a href="/pics/pics-from-'. titleReplace($listArray[$i]) .'" title="'. trim($listArray[$i]) .' Pictures">'. trim($listArray[$i]) .'</a></li>'; } else { $options .= '<option value="'. trim($listArray[$i]) .'">'. trim($listArray[$i]) .'</option>'; } } echo $options .='</select>'; return false; } any help would be great! EDIT: Also, the way I have those drop downs coming for the menus is a bit weird and when you hover over any other "sort by" link they disappear, this is a problem with the "sort by school" because the first select box shows the list up, and if you go and select a school then somehow float over another link it disappears, any help on how to delay that or fix that minor problem?

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  • Could not find generator mini_test:install

    - by David James
    I expected these generators to be available: $ rails g Usage: rails generate GENERATOR [args] [options] MiniTest: mini_test:controller mini_test:helper mini_test:install mini_test:mailer mini_test:model mini_test:scaffold So I ran: $ rails g mini_test:install But got this error: Could not find generator mini_test:install. As for my environment, here is the relevant portion of my Gemfile: group :test, :development do gem 'minitest-rails' end And the resulting portions of my Gemfile.lock: minitest (2.12.1) minitest-rails (0.0.7) minitest (~> 2.12) rails (~> 3.1) I am now in the process of debugging this. I would appreciate any tips. In any case, I will report back.

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  • Copy of Access mdb database being updated by live database

    - by James
    I'm trying to compute statistics for data held in an Access .mdb database. In order to avoid interfering with the live database, I'm working from a copy which I made by simply using copy-paste in Windows Explorer. The copy resides in the same directory, but with a different name. I'm using R and RODBC to connect to the copy of the file. The strange thing is that new data that is being updated on the original live database is appearing in my queries. This is despite the file timestamps of the copy not changing at all. It is also causing some slowdown in the live database. My understanding is that the .mdb files are standalone, or is this not the case? Should I have copied the database in a different way?

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  • Why use buffers to read/write Streams

    - by James Hay
    Following reading various questions on reading and writing Streams, all the various answers define something like this as the correct way to do it: private void CopyStream(Stream input, Stream output) { byte[] buffer = new byte[16 * 1024]; int read; while ((read = input.Read(buffer, 0, buffer.Length)) > 0) { output.Write(buffer, 0, read); } } Two questions: Why read and write in these smaller chunks? What is the significance of the buffer size used?

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  • how to diff / align Python lists using arbitrary matching function?

    - by James Tauber
    I'd like to align two lists in a similar way to what difflib.Differ would do except I want to be able to define a match function for comparing items, not just use string equality, and preferably a match function that can return a number between 0.0 and 1.0, not just a boolean. So, for example, say I had the two lists: L1 = [('A', 1), ('B', 3), ('C', 7)] L2 = ['A', 'b', 'C'] and I want to be able to write a match function like this: def match(item1, item2): if item1[0] == item2: return 1.0 elif item1[0].lower() == item2.lower(): return 0.5 else: return 0 and then do: d = Differ(match_func=match) d.compare(L1, L2) and have it diff using the match function. Like difflib, I'd rather the algorithm gave more intuitive Ratcliff-Obershelp type results rather than a purely minimal Levenshtein distance.

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  • The one true domain model - a fallacy?

    - by James L
    I've just finished working for a client which has burnt millions on a project to come up with the 'one true domain model' for their business. This was the project's sole deliverable. What are your thoughts on this? Is a single version of the truth realistic?

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