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  • ldd output showing shared object file whose function is not called

    - by iamrohitbanga
    I ran ldd command on an executable created by Open MPI. It shows a reference to libpthread.so Using LD_PRELOAD variable I created my own implementation of pthread_create, but from the it output it seems that MPI implementation is not calling pthread_create as I had expected. Why does ldd show pthread so file in output if it is not being used? does Open MPI not use a separate MPI thread for every node to implement the functionality?

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  • Parsing line with delimiter in Python

    - by neversaint
    I have lines of data which I want to parse. The data looks like this: a score=216 expect=1.05e-06 a score=180 expect=0.0394 What I want to do is to have a subroutine that parse them and return 2 values (score and expect) for each line. However this function of mine doesn't seem to work: def scoreEvalFromMaf(mafLines): for word in mafLines[0]: if word.startswith("score="): theScore = word.split('=')[1] theEval = word.split('=')[2] return [theScore, theEval] raise Exception("encountered an alignment without a score") Please advice what's the right way to do it?

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  • rsyncing - ignoring checksums

    - by paulj3000
    Trying to copy a bunch of data over and time, unfortunately, is of the essence. I'd like to do an rsync of all the data in one direction, pretty much rsync just clobbers what's over on the destination server. Is there a way to do an rsync and just say, "overwrite all files" Is there a better way of doing this? We're talking 500GB of data that only has to go in one direction.

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  • Question about using awk to print all columns great then nth

    - by Andy
    right now I have this line, and it worked until I had whitespace in the second field. svn status | grep '\!' | gawk '{print $2;}' > removedProjs is there a way to have awk print everything in $2 or greater? ($3, $4.. until we don't have anymore columns?) I suppose I should add that I'm doing this in a windows environment with cygwin.

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  • CVS in cmd/gui works only the third time I run a command.

    - by Somebody still uses you MS-DOS
    I'm using CVS in the command line. I'm in my repository folder. When I call a CVS command, I get... cvs [log aborted]: unrecognized auth response from localhost: -f [pserver aborted]: /opt/cvs/XXXXXX: no such repository ...2 times. The third time I run the command, it works with no problems. I tried to use a GUI client (CrossVC) and the same problem occurs. I tried inside gVim and Vim using VCSCommand and I'm having the same issues as well. I've tested with different times between each command, but I still have the same problems. I'm using a CVS configuration with stunnel. Why am I having problem with this setup? Why every time just the third time that I try to run the command that actually works?

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  • BASH: Checking for environment variables

    - by Hamza
    Hi folks, I am trying to check the value of an environment variable and depending on the value do certain things and it works fine as long as the variable is set. When it isn't though I get a whole bunch of errors (as BASH is trying to compare the string I specify with an undefined variable, I guess) I tried implementing an extra check to prevent it happening but no luck. The block of code I am using is: #!/bin/bash if [ -n $TESTVAR ] then if [ $TESTVAR == "x" ] then echo "foo" exit elif [ $TESTVAR == "y" ] then echo "bar" exit else echo "baz" exit fi else echo -e "TESTVAR not set\n" fi And this the output: $ export TESTVAR=x $ ./testenv.sh foo $ export TESTVAR=y $ ./testenv.sh bar $ export TESTVAR=q $ ./testenv.sh baz $ unset TESTVAR $ ./testenv.sh ./testenv.sh: line 5: [: ==: unary operator expected ./testenv.sh: line 9: [: ==: unary operator expected baz My question is, shouldn't 'unset TESTVAR' nullify it? It doesn't seem to be the case... Thanks.

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  • Use the output of a command as input of the next command

    - by r2b2
    so i call this php script from the command line : /usr/bin/php /var/www/bims/index.php "projects/output" and it's output is : file1 file2 file3 What I would like to do is get this output and feed to the "rm" command but i think im not doing it right : /usr/bin/php /var/www/bims/index.php "projects/output" | rm My goal is to delete whatever file names the php script outputs. What should be the proper way to do this? Thanks!

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  • Simple POSIX threads question

    - by Andy
    Hi, I have this POSIX thread: void subthread(void) { while(!quit_thread) { // do something ... // don't waste cpu cycles if(!quit_thread) usleep(500); } // free resources ... // tell main thread we're done quit_thread = FALSE; } Now I want to terminate subthread() from my main thread. I've tried the following: quit_thread = TRUE; // wait until subthread() has cleaned its resources while(quit_thread); But it does not work! The while() clause does never exit although my subthread clearly sets quit_thread to FALSE after having freed its resources! If I modify my shutdown code like this: quit_thread = TRUE; // wait until subthread() has cleaned its resources while(quit_thread) usleep(10); Then everything is working fine! Could someone explain to me why the first solution does not work and why the version with usleep(10) suddenly works? I know that this is not a pretty solution. I could use semaphores/signals for this but I'd like to learn something about multithreading, so I'd like to know why my first solution doesn't work. Thanks!

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  • Getting error that the database is locked when refreshing the page

    - by acidzombie24
    The title is a joke. However it is serious as far as my app is concerned. I am running apache with mod mono and my asp.net app is using mono sqlite as its db. When i refresh the page twice i get the DB is locked error. The folder it is in is chmod 777. The webapp is creating sqlite.db and sqlite.db-journal but it doesnt seem to be able to delete the journal. i'm confused. What permissions do i need to set these? i tried precreating the files using 777 and had no luck.

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  • objdump -S - source code listing

    - by anon
    How does objdump manage to display source code? Is there a reference to the source file in the binary? I tried running strings on the binary and couldn't find any reference to the source file listed... Thanks.

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  • How to warn for the use of unset variables in a korn shell script

    - by Lepu
    Is there any way to throw errors or warnings in a korn shell script to prevent the use of unset variables ? Let's assume I have a temporary folder that I want to remove. TEMP_FILES_DIR='/app/myapp/tmp' rm -Rf $TEMP_FILE_DIR #notice the misspelling How to prevent this kind of mistakes before they actually happen? I know the script should check for file existence and empty string before attempting to remove, this is just a silly example to illustrate a mistake that could have been avoided with some warnings. I don't know if this feature exists in ksh. If it does exist, how do you turn it on?

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  • Shortening large CSV on debian

    - by Unkwntech
    I have a very large CSV file and I need to write an app that will parse it but using the 6GB file to test against is painful, is there a simple way to extract the first hundred or two lines without having to load the entire file into memory? The file resides on a Debian server.

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  • How can I get `find` to ignore .svn directories?

    - by John Kugelman
    I often use the find command to search through source code, delete files, whatever. Annoyingly, because Subversion stores duplicates of each file in its .svn/text-base/ directories my simple searches end up getting lots of duplicate results. For example, I want to recursively search for uint in multiple messages.h and messages.cpp files: # find -name 'messages.*' -exec grep -Iw uint {} + ./messages.cpp: Log::verbose << "Discarding out of date message: id " << uint(olderMessage.id) ./messages.cpp: Log::verbose << "Added to send queue: " << *message << ": id " << uint(preparedMessage->id) ./messages.cpp: Log::error << "Received message with invalid SHA-1 hash: id " << uint(incomingMessage.id) ./messages.cpp: Log::verbose << "Received " << *message << ": id " << uint(incomingMessage.id) ./messages.cpp: Log::verbose << "Sent message: id " << uint(preparedMessage->id) ./messages.cpp: Log::verbose << "Discarding unsent message: id " << uint(preparedMessage->id) ./messages.cpp: for (uint i = 0; i < 10 && !_stopThreads; ++i) { ./.svn/text-base/messages.cpp.svn-base: Log::verbose << "Discarding out of date message: id " << uint(olderMessage.id) ./.svn/text-base/messages.cpp.svn-base: Log::verbose << "Added to send queue: " << *message << ": id " << uint(preparedMessage->id) ./.svn/text-base/messages.cpp.svn-base: Log::error << "Received message with invalid SHA-1 hash: id " << uint(incomingMessage.id) ./.svn/text-base/messages.cpp.svn-base: Log::verbose << "Received " << *message << ": id " << uint(incomingMessage.id) ./.svn/text-base/messages.cpp.svn-base: Log::verbose << "Sent message: id " << uint(preparedMessage->id) ./.svn/text-base/messages.cpp.svn-base: Log::verbose << "Discarding unsent message: id " << uint(preparedMessage->id) ./.svn/text-base/messages.cpp.svn-base: for (uint i = 0; i < 10 && !_stopThreads; ++i) { ./virus/messages.cpp:void VsMessageProcessor::_progress(const string &fileName, uint scanCount) ./virus/messages.cpp:ProgressMessage::ProgressMessage(const string &fileName, uint scanCount) ./virus/messages.h: void _progress(const std::string &fileName, uint scanCount); ./virus/messages.h: ProgressMessage(const std::string &fileName, uint scanCount); ./virus/messages.h: uint _scanCount; ./virus/.svn/text-base/messages.cpp.svn-base:void VsMessageProcessor::_progress(const string &fileName, uint scanCount) ./virus/.svn/text-base/messages.cpp.svn-base:ProgressMessage::ProgressMessage(const string &fileName, uint scanCount) ./virus/.svn/text-base/messages.h.svn-base: void _progress(const std::string &fileName, uint scanCount); ./virus/.svn/text-base/messages.h.svn-base: ProgressMessage(const std::string &fileName, uint scanCount); ./virus/.svn/text-base/messages.h.svn-base: uint _scanCount; How can I tell find to ignore the .svn directories?

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  • inode_operations , warning: initialization from incompatible pointer type

    - by djTeller
    Hi everyone, I'm trying to compile a simple Kernel program that read and write from a proc file. I'm trying to set permission to that file by overriding the permission fp in inode_operations struct (.permission) static int module_permission(struct inode *inode, int op, struct nameidata *foo) { . . . } static struct inode_operations Inode_Ops_4_Our_Proc_File = { .permission = module_permission, /* check for permissions */ }; Our_Proc_File->proc_iops = &Inode_Ops_4_Our_Proc_File; For some reason, when I compile this i get - warning: initialization from incompatible pointer type on the following line: .permission = module_permission, /* check for permissions */ Any idea how to solve this? Thanks!

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  • Microbenchmark showing process-switching faster than thread-switching; what's wrong?

    - by Yang
    I have two simple microbenchmarks trying to measure thread- and process-switching overheads, but the process-switching overhead. The code is living here, and r1667 is pasted below: https://assorted.svn.sourceforge.net/svnroot/assorted/sandbox/trunk/src/c/process_switch_bench.c // on zs, ~2.1-2.4us/switch #include <stdlib.h> #include <fcntl.h> #include <stdint.h> #include <stdio.h> #include <semaphore.h> #include <unistd.h> #include <sys/wait.h> #include <sys/types.h> #include <sys/time.h> #include <pthread.h> uint32_t COUNTER; pthread_mutex_t LOCK; pthread_mutex_t START; sem_t *s0, *s1, *s2; void * threads ( void * unused ) { // Wait till we may fire away sem_wait(s2); for (;;) { pthread_mutex_lock(&LOCK); pthread_mutex_unlock(&LOCK); COUNTER++; sem_post(s0); sem_wait(s1); } return 0; } int64_t timeInMS () { struct timeval t; gettimeofday(&t, NULL); return ( (int64_t)t.tv_sec * 1000 + (int64_t)t.tv_usec / 1000 ); } int main ( int argc, char ** argv ) { int64_t start; pthread_t t1; pthread_mutex_init(&LOCK, NULL); COUNTER = 0; s0 = sem_open("/s0", O_CREAT, 0022, 0); if (s0 == 0) { perror("sem_open"); exit(1); } s1 = sem_open("/s1", O_CREAT, 0022, 0); if (s1 == 0) { perror("sem_open"); exit(1); } s2 = sem_open("/s2", O_CREAT, 0022, 0); if (s2 == 0) { perror("sem_open"); exit(1); } int x, y, z; sem_getvalue(s0, &x); sem_getvalue(s1, &y); sem_getvalue(s2, &z); printf("%d %d %d\n", x, y, z); pid_t pid = fork(); if (pid) { pthread_create(&t1, NULL, threads, NULL); pthread_detach(t1); // Get start time and fire away start = timeInMS(); sem_post(s2); sem_post(s2); // Wait for about a second sleep(1); // Stop thread pthread_mutex_lock(&LOCK); // Find out how much time has really passed. sleep won't guarantee me that // I sleep exactly one second, I might sleep longer since even after being // woken up, it can take some time before I gain back CPU time. Further // some more time might have passed before I obtained the lock! int64_t time = timeInMS() - start; // Correct the number of thread switches accordingly COUNTER = (uint32_t)(((uint64_t)COUNTER * 2 * 1000) / time); printf("Number of process switches in about one second was %u\n", COUNTER); printf("roughly %f microseconds per switch\n", 1000000.0 / COUNTER); // clean up kill(pid, 9); wait(0); sem_close(s0); sem_close(s1); sem_unlink("/s0"); sem_unlink("/s1"); sem_unlink("/s2"); } else { if (1) { sem_t *t = s0; s0 = s1; s1 = t; } threads(0); // never return } return 0; } https://assorted.svn.sourceforge.net/svnroot/assorted/sandbox/trunk/src/c/thread_switch_bench.c // From <http://stackoverflow.com/questions/304752/how-to-estimate-the-thread-context-switching-overhead> // on zs, ~4-5us/switch; tried making COUNTER updated only by one thread, but no difference #include <stdlib.h> #include <stdint.h> #include <stdio.h> #include <pthread.h> #include <unistd.h> #include <sys/time.h> uint32_t COUNTER; pthread_mutex_t LOCK; pthread_mutex_t START; pthread_cond_t CONDITION; void * threads ( void * unused ) { // Wait till we may fire away pthread_mutex_lock(&START); pthread_mutex_unlock(&START); int first=1; pthread_mutex_lock(&LOCK); // If I'm not the first thread, the other thread is already waiting on // the condition, thus Ihave to wake it up first, otherwise we'll deadlock if (COUNTER > 0) { pthread_cond_signal(&CONDITION); first=0; } for (;;) { if (first) COUNTER++; pthread_cond_wait(&CONDITION, &LOCK); // Always wake up the other thread before processing. The other // thread will not be able to do anything as long as I don't go // back to sleep first. pthread_cond_signal(&CONDITION); } pthread_mutex_unlock(&LOCK); return 0; } int64_t timeInMS () { struct timeval t; gettimeofday(&t, NULL); return ( (int64_t)t.tv_sec * 1000 + (int64_t)t.tv_usec / 1000 ); } int main ( int argc, char ** argv ) { int64_t start; pthread_t t1; pthread_t t2; pthread_mutex_init(&LOCK, NULL); pthread_mutex_init(&START, NULL); pthread_cond_init(&CONDITION, NULL); pthread_mutex_lock(&START); COUNTER = 0; pthread_create(&t1, NULL, threads, NULL); pthread_create(&t2, NULL, threads, NULL); pthread_detach(t1); pthread_detach(t2); // Get start time and fire away start = timeInMS(); pthread_mutex_unlock(&START); // Wait for about a second sleep(1); // Stop both threads pthread_mutex_lock(&LOCK); // Find out how much time has really passed. sleep won't guarantee me that // I sleep exactly one second, I might sleep longer since even after being // woken up, it can take some time before I gain back CPU time. Further // some more time might have passed before I obtained the lock! int64_t time = timeInMS() - start; // Correct the number of thread switches accordingly COUNTER = (uint32_t)(((uint64_t)COUNTER * 2 * 1000) / time); printf("Number of thread switches in about one second was %u\n", COUNTER); printf("roughly %f microseconds per switch\n", 1000000.0 / COUNTER); return 0; }

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  • How to implement/debug a sensor driver in ANDROID

    - by CVS-2600Hertz-wordpress-com
    Does anyone know of a walk-through or any examples of any code to setup sensors in android. I have the drivers available to me. Also i have implemented the sensors library as instructed in the Android-Reference along the sensors.h template. I am still unable to get any response at the apps level. How do i trace this issue? what might be the problem? Thanks in advance UPDATE: Jorgesys's link below points to a great APP to test if the sensor drivers are functioning properly or not. Not that i know they are not functioning, Any ideas of on where to dig??...

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  • Perl standard input with argument inside Bash

    - by neversaint
    I want to have such pipe in bash #! /usr/bin/bash cut -f1,2 file1.txt | myperl.pl foo | sort -u Now in myperl.pl it has content like this my $argv = $ARG[0] || "foo"; while (<>) { chomp; if ($argv eq "foo") { # do something with $_ } else { # do another } } But why the Perl script can't recognize the parameter passed through bash? Namely the code break with this message: Can't open foo: No such file or directory at myperl.pl line 15. What the right way to do it so that my Perl script can receive standard input and parameter at the same time?

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  • How to maipulate the shell output in php

    - by Mirage
    I am trying to write php script which does some shell functions like reporting. So i am starting with diskusage report I want in following format drive path ------------total-size --------free-space Nothing else My script is $output = shell_exec('df -h -T'); echo "<pre>$output</pre>"; and its ouput is like below Filesystem Type Size Used Avail Use% Mounted on /dev/sda6 ext3 92G 6.6G 81G 8% / none devtmpfs 3.9G 216K 3.9G 1% /dev none tmpfs 4.0G 176K 4.0G 1% /dev/shm none tmpfs 4.0G 1.1M 4.0G 1% /var/run none tmpfs 4.0G 0 4.0G 0% /var/lock none tmpfs 4.0G 0 4.0G 0% /lib/init/rw /dev/sdb1 ext3 459G 232G 204G 54% /media/Server /dev/sdb2 fuseblk 466G 254G 212G 55% /media/BACKUPS /dev/sda5 fuseblk 738G 243G 495G 33% /media/virtual_machines How can i convert that ouput into my forn\matted output

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  • How to R/W hard disk when CPU is in Protect Mode?

    - by smwikipedia
    I am doing some OS experiment. Until now, all my code utilized the real mode BIOS interrupt to manipulate hard disk and floppy. But once my code enabled the Protect Mode of the CPU, all the real mode BIOS interrupt service routine won't be available. How could I R/W the hard disk and floppy? I have a feeling that I need to do some hardware drivers now. Am I right? Is this why an OS is so difficult to develop? I know that hardwares are all controlled by reading from and writing to certain control or data registers. For example, I know that the Command Block Registers of hard disk range from 0x1F0 to 0x1F7. But I am wondering whether the register addresses of so many different hardwares are the same on the PC platform? Or do I have to detect that before using them? How to detect them?? For any responses I present my deep appreciation.

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  • Things to do to port game made for iOS in Unity to Android?

    - by 2600th
    I have just made my first game for iOS and submitted it to app store. I was thinking of porting my game to Android also. I would like to know things one need to do/remember to port game made for iOS in Unity to Android. How to handle different screen resolutions and pixel densities, optimizations required, etc. Any other suggestions and important things you think I should know? EDIT: Also, should I handle builds according to device resolutions or by pixel density?

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  • file_operations Question, how do i know if a process that opened a file for writing has decided to c

    - by djTeller
    Hi Kernel Gurus, I'm currently writing a simple "multicaster" module. Only one process can open a proc filesystem file for writing, and the rest can open it for reading. To do so i use the inode_operation .permission callback, I check the operation and when i detect someone open a file for writing I set a flag ON. i need a way to detect if a process that opened a file for writing has decided to close the file so i can set the flag OFF, so someone else can open for writing. Currently in case someone is open for writing i save the current-pid of that process and when the .close callback is called I check if that process is the one I saved earlier. Is there a better way to do that? Without saving the pid, perhaps checking the files that the current process has opened and it's permission... Thanks!

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