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  • Sorting tab delimited text file based on multiple columns in natural way [duplicate]

    - by Vignesh
    This question already has an answer here: Sorting a column of CSV file resulting in 1123 appearing before 232 1 answer I am trying to sort a file based on all two columns Eg: chr19 1070019 1070020 chr16 869712 869713 chr1 1378131 1378132 chr12 189386 189387 chr4 254941 254942 chr16 1476500 1476501 chr2 1476810 1476811 chr19 313283 313284 chr17 595817 595818 chr18 656897 656898 chr19 1061829 1061830 I Tried sort -t $\t -k1,1 2,2 <filename> but doesn't work. I want the output to be sorted by first column and second column based on first column. I want to do a natural sort. Not lexical sorting. Eg: chr1 1378131 1378132 chr2 1476810 1476811 chr4 254941 254942 chr12 189386 189387 chr16 869712 869713 chr16 1476500 1476501 chr17 595817 595818 chr18 656897 656898 chr19 313283 313284 chr19 1061829 1061830 chr19 1070019 1070020 Anyone any idea?

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  • BASH: How to remove all files except those named in a manifest?

    - by brice
    I have a manifest file which is just a list of newline separated filenames. How can I remove all files that are not named in the manifest from a folder? I've tried to build a find ./ ! -name "filename" command dynamically: command="find ./ ! -name \"MANIFEST\" " for line in `cat MANIFEST`; do command=${command}"! -name \"${line}\" " done command=${command} -exec echo {} \; $command But the files remain. [Note:] I know this uses echo. I want to check what my command does before using it.

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  • What benefits can Java developer have from moving to a *NIX platform?

    - by dave-keiture
    Hi everyone, A friend of mine is a Java developer, who's using *NIX for ages. He claims that *NIX is for real Java geeks, whereas WIN is for dummies (and I'm one of them, according to him) and girls. When I ask him to argue his position, and explain, what's so good for Java developer on *NIX, he starts talking about console, wget, curl and grep. But sorry, wget and curl analogues exist for the WIN platform as well. As for the console - I'm using FAR Commander, and have access to the command line when I need. Moreover, even if I decide moving to *NIX, I will certainly use Netbeans or Eclipse on it, so there will be no big difference. Guys, who use Java on *NIX, could you please give me some real killer examples, when *NIX (any util or technique) dramatically increases Java development productivity (in the way the hints are given in "The Pragmatic Programmer"), or, which is also important, gives more fun from the process. Thanks in advance!

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  • Close socket and select()

    - by kamziro
    So I need to close a particular connection, but the problem is another thread is, at the same time, doing a select() which has the socket as one of the file descriptors it's watching. Will the select() terminate gracefully, or will anything bad happen?

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  • Perl code -need some understanding.

    - by benjamin button
    Hi i have a perl code below: foreach (@tmp_cycledef) { chomp; my ($cycle_code, $close_day, $first_date) = split(/\|/, $_,3); $cycle_code =~ s/^\s*(\S*(?:\s+\S+)*)\s*$/$1/; $close_day =~ s/^\s*(\S*(?:\s+\S+)*)\s*$/$1/; $first_date =~ s/^\s*(\S*(?:\s+\S+)*)\s*$/$1/; #print "$cycle_code, $close_day, $first_date\n"; $cycledef{$cycle_code} = [ $close_day, split(/-/,$first_date) ]; } the value of tmp_cycledef comes from output of an sql query: select cycle_code,cycle_close_day,to_char(cycle_first_date,'YYYY-MM-DD') from cycle_definition d order by cycle_code; can anybody tell me what exactly is happening inside the for loop? thanks in advance.

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  • What benefits can Java developer have moving to a *NIX platform?

    - by dave-keiture
    Hi everyone, A friend of mine is a Java developer, who's using *NIX for ages. He claims that *NIX is for real Java geeks, whereas WIN is for dummies (and I'm one of them, according to him) and girls. When I ask him to argue his position, and explain, what's so good for Java developer on *NIX, he starts talking about console, wget, curl and grep. But sorry, wget and curl analogues exist for the WIN platform as well. As for the console - I'm using FAR Commander, and have access to the command line when I need. Moreover, even if I decide moving to *NIX, I will certainly use Netbeans or Eclipse there, so there will be no big difference. Guys, who use Java on *NIX, could you please give me a real killer examples, when *NIX (any util or technique) dramatically increases Java development productivity (in the way the hints are given in "The Pragmatic Programmer"), or, which is also important, gives more fun from the process. Thanks in advance!

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  • How to (legitimately) access files after putting self into chrooted sandbox?

    - by unknown google user
    Changing a Linux C++ program which gives the user limited file access. Thus the program chroots itself to a sandbox with the files the user can get at. All worked well. Now, however, the program needs to access some files for its own needs (not the user's) but they are outside the sandbox. I know chroot allows access to files opened before the chroot but in this case the needed files could a few among many hundreds so it is obviously impractical to open them all just for the couple that might be required. Is there any way to get at the files?

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  • How do I return a perl variable to a .ksh script?

    - by Dave
    I have a .ksh script that calls a perl pgm. The perl pgm creates some important data that the .ksh script needs to act on. Example: .ksh pgm #!/usr/bin/ksh abc.pl > $logFile # perl pgm creates variable $importantData See below. # HOW DO I GET THE .KSH SCRIPT TO SEE $importantData ??? def.ksh $importantData # send important data to another .ksh script exit . Perl pgm $importantData = somefunction(); exit;

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  • Can I get the amount of time for which a key is pressed on a keyboard

    - by Adi
    Dear all, I am working on a project in which I have to develop bio-passwords based on user's keystroke style. Suppose a user types a password for 20 times, his keystrokes are recorded, like holdtime : time for which a particular key is pressed. digraph time : time it takes to press a different key. suppose a user types a password " COMPUTER". I need to know the time for which every key is pressed. something like : holdtime for the above password is C-- 200ms O-- 130ms M-- 150ms P-- 175ms U-- 320ms T-- 230ms E-- 120ms R-- 300ms The rational behind this is , every user will have a different holdtime. Say a old person is typing the password, he will take more time then a student. And it will be unique to a particular person. To do this project, I need to record the time for each key pressed. I would greatly appreciate if anyone can guide me in how to get these times. Editing from here.. Language is not important, but I would prefer it in C. I am more interested in getting the dataset.

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  • image magick please help he

    - by Libi
    system(' convert -size 320x100 xc:lightblue -font Candice -pointsize 72 \ -fill navy -annotate +25+65 \'Anthony\' \ -distort Arc 120 -trim +repage \ -bordercolor lightblue -border 10 font_arc.jpg '); curving text like arc This code is not working please help me

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  • How to export shell variable within perl script

    - by lamcro
    I have a shell script, with a list of shell variables, which is executed before entering a programming environment. I want to use a perl script to enter the programming environment: system("environment_defaults.sh"); system("obe"); but I when I enter the environment the variables are not set.

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  • How to make SVN ignore a folder?

    - by pg
    I want to make SVN ignore everything that is in my wordpress directory. It bring me nothing but headaches because of auto updates to plugins etc. When I... svn propedit svn:ignore ./blog It tells me... svn: None of the environment variables SVN_EDITOR, VISUAL or EDITOR is set, and no 'editor-cmd' run-time configuration option was found So I... [phil@sessions www]$ export SVN_EDITOR=emacs [phil@sessions www]$ svn propedit svn:ignore ./blog But I don't know what to put in here to make it ignore.

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  • Use matching value of a RegExp to name the output file.

    - by fx42
    I have this file "file.txt" which I want to split into many smaller ones. Each line of the file has an id field which looks like "id:1" for a line belonging to id 1. For each id in the file, I like to create a file named idid.txt and put all lines that belong to this id in that file. My brute force bash script solution reads as follows. count=1 while [ $count -lt 19945 ] do cat file.txt | grep "id:$count " >> ./sets/id$count.txt count='expr $count + 1' done Now this is very inefficient as I have do read through the file about 20.000 times. Is there a way to do the same operation with only one pass through the file? - What I'm probably asking for is a way to use the value that matches for a regular expression to name the associated output file.

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  • Saving CFPropertyLists To Users Folder

    - by stephen blinkhorn
    I'm trying to save a CFPropertyList to a location in the user's home folder. Using the code below I'm getting errorCode = -10 (unknown error). CFURLRef fileURL = CFURLCreateWithFileSystemPath(kCFAllocatorDefault, CFSTR("~/testfile.txt"), kCFURLPOSIXPathStyle, false ); SInt32 errorCode; Boolean status = CFURLWriteDataAndPropertiesToResource(fileURL, xmlData, NULL, &errorCode); If I change the path to something like "/testfile.txt" without the '~' then everything works. How can one save a property list to the current user's home folder? Must one obtain the user's name first and include it in the path such as /users/toffler/testfile.txt?

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  • Bash: Is it ok to use same input file as output of a piped command?

    - by Amro
    Consider something like: cat file | command > file Is this good practice? Could this overwrite the input file as the same time as we are reading it, or is it always read first in memory then piped to second command? Obviously I can use temp files as intermediary step, but I'm just wondering.. t=$(mktemp) cat file | command > ${t} && mv ${t} file

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