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• No clue for high load average on top

  - by Oz.

  We have several machines on Amazon (ec2) of the type c1.xlarge with 16 cpus, running the Amazon AMI. Details on the machine: 7 GB of memory 20 EC2 Compute Units (8 virtual cores with 2.5 EC2 Compute Units each) 1690 GB of instance storage 64-bit platform I/O Performance: High API name: c1.xlarge One out of the several machines is showing a high load average, since we have run the last yum upgrade a couple of weeks a go. We did not yet update the other machines, and everything looks normal on them. The strange thing is that the top command not showing any hint for the cause of the load. CPUs are 4.8%us, 1.1%sy, 0.0%ni, 94.1%id, 0.0%wa, 0.0%hi, 0.0%si, 0.0%st(see below). Mem is about 1.5GB free. Any idea what could it be, or where else can we check? Many thanks for the help. # # top # top - 07:57:42 up 4:18, 1 user, load average: 1.36, 1.45, 1.47 Tasks: 131 total, 1 running, 130 sleeping, 0 stopped, 0 zombie Cpu(s): 4.8%us, 1.1%sy, 0.0%ni, 94.1%id, 0.0%wa, 0.0%hi, 0.0%si, 0.0%st Mem: 7120092k total, 5644920k used, 1475172k free, 532888k buffers Swap: 0k total, 0k used, 0k free, 3463936k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 1557 mysql 20 0 1829m 374m 6448 S 14.3 5.4 11:15.09 mysqld 6655 apache 20 0 416m 49m 3744 S 9.3 0.7 0:04.85 httpd 27683 apache 20 0 421m 54m 3708 S 9.0 0.8 0:00.99 httpd 6682 apache 20 0 424m 57m 3788 S 8.3 0.8 0:03.81 httpd 16816 apache 20 0 419m 51m 3760 S 4.3 0.7 0:04.09 httpd 22182 apache 20 0 417m 50m 3756 S 1.7 0.7 0:06.34 httpd 219 root 20 0 0 0 0 S 0.3 0.0 0:00.34 kworker/7:1 699 root 20 0 0 0 0 S 0.3 0.0 0:00.40 kworker/3:1 1 root 20 0 19376 1508 1212 S 0.0 0.0 0:00.29 init 2 root 20 0 0 0 0 S 0.0 0.0 0:00.00 kthreadd 3 root 20 0 0 0 0 S 0.0 0.0 0:00.71 ksoftirqd/0

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• GDM login screen is not displayed with VNC

  - by niboshi

  Hi, I set up VNC server with xinetd. Also configured GDM so that XDMCP is enabled. VNC connection seems okay, but GDM login screen is not shown. Instead I can only see old bare X screen (gray meshed background and X-shaped mouse pointer), which I can't do any interaction with it. What can I do to fix the problem? No log is written below /var/log/. Server distribution: Ubuntu marverick /etc/xinetd.d/vnc is like below: service vnc1024 { disable = no socket_type = stream protocol = tcp wait = no user = nobody server = /usr/bin/Xvnc server_args = -inetd -query localhost -geometry 1024x768 -depth 24 -once securitytypes=none port = 12345 } /etc/gdm/custom.conf: [daemon] [security] DisallowTCP=false [xdmcp] Enable=true [gui] [greeter] [chooser] [debug] [servers] /etc/services is also configured. Thanks

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• how to prevent new windows from stealing focus in gnome

  - by BD at Rivenhill

  I'm running Ubuntu 9.04 and I have the window manager configured for "focus follows mouse" but new application windows will steal the focus. Seems like there are many threads out there complaining about this behavior, but I see no solutions, am I missing something?

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• How to determine the Kerberos realm from an LDAP directory?

  - by tstm

  I have two Kerberos realms I can authenticate against. One of them I can control, and the other one is external from my point of view. I also have an internal user database in LDAP. Let's say the realms are INTERNAL.COM and EXTERNAL.COM. In ldap I have user entries like this: 1054 uid=testuser,ou=People,dc=tml,dc=hut,dc=fi shadowFlag: 0 shadowMin: -1 loginShell: /bin/bash shadowInactive: -1 displayName: User Test objectClass: top objectClass: account objectClass: posixAccount objectClass: shadowAccount objectClass: person objectClass: organizationalPerson objectClass: inetOrgPerson uidNumber: 1059 shadowWarning: 14 uid: testuser shadowMax: 99999 gidNumber: 1024 gecos: User Test sn: Test homeDirectory: /home/testuser mail: [email protected] givenName: User shadowLastChange: 15504 shadowExpire: 15522 cn: User.Test userPassword: {SASL}[email protected] What I would like to do, somehow, is to specify per-user basis to which authentication server / realm the user is authenticated against. Configuring kerberos to handle multiple realms is easy. But how to I configure other instances, like PAM, to handle the fact that some users are from INTERNAL.COM and some from EXTERNAL.COM? There needs to be an LDAP lookup of some kind where the realm and the authentication name is fetched from, and then the actual authentication itself. Is there a standardized way to add this information to LDAP, or look it up? Are there some other workarounds for a multi-realm user base? I might be ok with a single realm solution, too, as long as I can specify the user name - realm -combination for the user separately.

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• Disk Partitioning problem with fdisk.

  - by MA1

  Currently i am using fdisk to create/resize windows partitions. Following is a sample input script to fdisk to create/resize windows partitions: fdisk /dev/sda < partInput the contents of partInput are as follows: d #delete the partition 3 #partition number to be deleted n #add a new partition p #primary: type of new partition 3 #new partition number 18804 #start cylinder of new partition 77433 #end cylinder of new partition t #change the type of partition 3 #partition number whose type(filesystem) is to be changed 7 #HPFS/NTFS: partition type(filesystem) n #add a new partition p #primary: type of partition 77434 #first cylinder of new partition 77825 #end cylinder new partition w #write all the above changes As you see in the above input we are using cylinders for start and end. Earlier i am using sectors as unit and everything is working fine but getting problems when partitioning a 1.5TB hard drive. Then i changed the unit to cylinders but it is working on some machines not all. On some machines fdisk failed to create the partition table correctly. So, i am thinking to move to parted if there is no way to do the above using fdisk. Please also tell me how to correctly convert sectors to cylinders? How to perform all the above steps using parted without losing the data OR how to use fdisk correctly?

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• Using Coherence API to get POF bytes

  - by Bruno.Borges

  Someone raised the question on how to use the Coherence API to get the bytes of an object in POF (Portable Object Format) programatically. So I came up with this small code that shows the very cool API simple usage :-)   SimplePofContext spc = new SimplePofContext();    spc.registerUserType(0, User.class, new UserSerializer());    // consider UserSerializer as an implementation of PofSerializer            User u = new User();    u.setId(21);    u.setName("Some Name");    u.setEmail("[email protected]");            ByteArrayOutputStream baos = new ByteArrayOutputStream();    DataOutput dataOutput = new DataOutputStream(baos);    BufferOutput bufferOutput = new WrapperBufferOutput(dataOutput);    spc.serialize(bufferOutput, u);            byte[] byteArray = baos.toByteArray();    System.out.println(Arrays.toString(byteArray));  Easy, isn't?

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• insserv: Script <SCRIPT_NAME> is broken: missing end of LSB comment.

  - by udo

  I am getting this error when running: insserv -r udo-startup.sh insserv: Script udo-startup.sh is broken: missing end of LSB comment. insserv: exiting now! The content of udo-startup.sh is this: #!/bin/bash ### BEGIN INIT INFO # Provides: udo-startup.sh # Required-Start: $local_fs $remote_fs $network $syslog # Required-Stop: $local_fs $remote_fs $network $syslog # Default-Start: 2 3 4 5 # Default-Stop: 0 1 6 # Short-Description: - # Description: - ### END INIT INF ID=$(xinput list | grep -i touchpad | sed '/TouchPad/s/^.*id=\([0-9]*\).*$/\1/') xinput set-prop $ID "Device Enabled" 0 exit 0

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• Why Does Adding a UDF or Code Truncates the # of Resources in List?

  - by Jeffrey McDaniel

  Go to the Primavera - Resource Assignment History subject area.  Go under Resources, General and add fields Resource Id, Resource Name and Current Flag. Because this is using a historical subject area with Type II slowly changing dimensions for Resources you may get multiple rows for each resource if there have been any changes on the resource.  You may see a few records with current flags = 0, and you will see a row with current flag = 1 for all resources. Current flag = 1 represents this is the most up to date row for this resource.  In this query the OBI server is only querying the W_RESOURCE_HD dimension.  (Query from nqquery log) select distinct 0 as c1,      D1.c1 as c2,      D1.c2 as c3,      D1.c3 as c4 from       (select distinct T10745.CURRENT_FLAG as c1,                T10745.RESOURCE_ID as c2,                T10745.RESOURCE_NAME as c3           from                 W_RESOURCE_HD T10745 /* Dim_W_RESOURCE_HD_Resource */            where  ( T10745.LAST_RUN_PER_DAY_FLAG = 1 )       ) D1 If you add a resource code to the query now it is forcing the OBI server to include data from W_RESOURCE_HD, W_CODES_RESOURCE_HD, as well as W_ASSIGNMENT_SPREAD_HF. Because the Resource and Resource Codes are in different dimensions they must be joined through a common fact table. So if at anytime you are pulling data from different dimensions it will ALWAYS pass through the fact table in that subject areas. One rule is if there is no fact value related to that dimensional data then nothing will show. In this case if you have a list of 100 resources when you query just Resource Id, Resource Name and Current Flag but when you add a Resource Code the list drops to 60 it could be because those resources exist at a dictionary level but are not assigned to any activities and therefore have no facts. As discussed in a previous blog, its all about the facts.   Here is a look at the query returned from the OBI server when trying to query Resource Id, Resource Name, Current Flag and a Resource Code.  You'll see in the query there is an actual fact included (AT_COMPLETION_UNITS) even though it is never returned when viewing the data through the Analysis. select distinct 0 as c1,      D1.c2 as c2,      D1.c3 as c3,      D1.c4 as c4,      D1.c5 as c5,      D1.c1 as c6 from       (select sum(T10754.AT_COMPLETION_UNITS) as c1,                T10706.CODE_VALUE_02 as c2,                T10745.CURRENT_FLAG as c3,                T10745.RESOURCE_ID as c4,                T10745.RESOURCE_NAME as c5           from                 W_RESOURCE_HD T10745 /* Dim_W_RESOURCE_HD_Resource */ ,                W_CODES_RESOURCE_HD T10706 /* Dim_W_CODES_RESOURCE_HD_Resource_Codes_HD */ ,                W_ASSIGNMENT_SPREAD_HF T10754 /* Fact_W_ASSIGNMENT_SPREAD_HF_Assignment_Spread */            where  ( T10706.RESOURCE_OBJECT_ID = T10754.RESOURCE_OBJECT_ID and T10706.LAST_RUN_PER_DAY_FLAG = 1 and T10745.ROW_WID = T10754.RESOURCE_WID and T10745.LAST_RUN_PER_DAY_FLAG = 1 and T10754.LAST_RUN_PER_DAY_FLAG = 1 )            group by T10706.CODE_VALUE_02, T10745.RESOURCE_ID, T10745.RESOURCE_NAME, T10745.CURRENT_FLAG      ) D1 order by c4, c5, c3, c2 When querying in any subject area and you cross different dimensions, especially Type II slowly changing dimensions, if the result set appears to be short the first place to look is to see if that object has associated facts.

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• How can I fix this configure error?

  - by balor123

  I'm trying to build mosh from source on a SUSE10 machine and am getting the following error: checking for protobuf... no configure: error: Package requirements (protobuf) were not met: No package 'protobuf' found Consider adjusting the PKG_CONFIG_PATH environment variable if you installed software in a non-standard prefix. Alternatively, you may set the environment variables protobuf_CFLAGS and protobuf_LIBS to avoid the need to call pkg-config. See the pkg-config man page for more details. I downloaded the source to protobuf and installed it in a custom path as well. I'm not using a package manager for any of this and cannot for various reasons outside the scope of the question. I added that custom path to my PATH and rehashed. Typically, this is enough for configure but in this case its not doing the trick. I added the prefix for protobuf to PKG_CONFIG_PATH but am still hitting this error. What should I do next to get past this error?

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• Cobalt Qube 3 Unresponsive

  - by Devin Gund

  I recently bought a used Cobalt Qube 3 server off of eBay. The seller listed it as working before it was shipped. After starting it up for the first time, the "Cobalt Networks" logo scrolled across the LCD screen (this is normal), but then it stayed there. It will not go away, and the server will not respond to any of the buttons besides turning it off. I read the manual, and it does not say anything about this normally occurring. If necessary, could anyone walk me through or provide links to a reset tutorial? I have the OS Restore CD. Please help? I'm not sure why my question is being downvoted but if you need any more information please comment.

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• WEB based HPC cluster node management

  - by Skuja

  Hello, i am working on my school diploma thesis. The main goal is to create web based application where logged users could see free and busy nodes, turn them on and off, see what process they are running etc. Figured out that i could do something like this - write some cron daemon that would run every 30seconds or so, and it could run ping utility for each node to find out if it is on or off, then write results to some file. Then from my web app (i will write in PHP) i could read the info. Will it be a good solution? How would you suggest me to do it? And finally, is there any existing solutions (it may not be a definetly ewb based) for managment of cluster nodes?

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• How to test server throughput

  - by embwbam

  I've always used apache benchmark to try to get a rough idea of how many requests/second my server can handle. I read that it was good, and it seemed to work well. Enter node.js, which is fully event-based, so it never blocks. If I run apache benchmark on a simple hello world server it can handle 2500 requests per second or so. However, if I put a timeout in the hello world function, so that it responds after 2 seconds, apache benchmark reports a dramatically reduced throughput: about 50/s. I'm running 100 concurrent connections with ab. If I increase the concurrency, it goes up. This makes sense, because apache benchmark is basically sending out requests in batches of 100, which come back every 2 seconds. 100 requests / 2 seconds = 50 requests / second If I increase the concurrency to about 400 or 500, it starts to crash. I don't think I've hit node.js's limit, I think I'm hitting a wall in my operating system on the number of open file descriptors or sockets or something. Any way I can get a good guess about how many requests my server can handle? I want to make sure the test computer isn't the one causing the problem.

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• Full HD video playback acceleration with mplayer on Ubuntu Lucid

  - by pts

  I know that for an NVidia card I can sudo apt-get install nvidia-current mplayer, reboot, and then use mplayer -vo vdpau -vc ffmpeg12vdpau,ffwmv3vdpau,ffvc1vdpau,ffh264vdpau FILE.mkv to get accelerated video playback of H.264 and other codecs, so even full HD videos can be played back with only little CPU. (And there are many other options, e.g. XBMC also supports VDPAU.) But how do I get accelerated video playback if I have a recent ATI or Intel video card on Ubuntu Lucid? How do I figure out if my video card has acceleration built in? The solution has to work with mplayer or mplayer2. It's OK for me to recompile mplayer(2), but I'd prefer installing both the kernel and the X.org X server from a binary package repository.

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• why my server has a dir named "?"

  - by liuxingruo

  These are all the dirs in my server: ? bin boot dev etc home lib lost+found media media2 misc mnt net opt proc root sbin selinux srv sys tmp usr var why there is a "?" dir? Thanks very much. BTW: the touch command was found on my server(wiered). I list the bin dir: alsacard cp dd env hostname loadkeys more ps sed tcptraceroute alsaunmute cpio df ex igawk loadkeys.static mount pwd setfont traceroute6 arch csh dmesg false ipcalc logger mountpoint raw setserial tracert awk cut dnsdomainname fgrep kbd_mode login mv red sh view basename date doexec gawk keyctl ls netstat redhat_lsb_init sleep ypdomainname bash dbus-cleanup-sockets domainname gettext kill mail nice rm sort cat dbus-daemon dumpkeys grep ksh mailx nisdomainname rmdir stty chgrp dbus-monitor echo gtar ksh93 mkdir pgawk rpm su chmod dbus-send ed gunzip link mknod ping rvi sync chown dbus-uuidgen egrep gzip ln mktemp ping6 rview tar touch is missing, how can i get it back?

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• Why does the java -Xmx not working?

  - by Zenofo

  In my Ubuntu 11.10 VPS, Before I run the jar file: # free -m total used free shared buffers cached Mem: 256 5 250 0 0 0 -/+ buffers/cache: 5 250 Swap: 0 0 0 Run a jar file that limited to maximum of 32M memory: java -Xms8m -Xmx32m -jar ./my.jar Now the memory state as follows: # free -m total used free shared buffers cached Mem: 256 155 100 0 0 0 -/+ buffers/cache: 155 100 Swap: 0 0 0 This jar occupied 150M memory. And I can't run any other java command: # java -version Error occurred during initialization of VM Could not reserve enough space for object heap Could not create the Java virtual machine. # java -Xmx8m -version Error occurred during initialization of VM Could not reserve enough space for object heap Could not create the Java virtual machine. I want to know why the -Xmx parameter does not take effect? How can I limit the jar file using the memory?

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• Monit can't detect MySQL, but I can

  - by Matchu

  Monit is configured to watch MySQL on localhost at port 3306. check process mysqld with pidfile /var/lib/mysql/li175-241.pid start program = "/etc/init.d/mysql start" stop program = "/etc/init.d/mysql stop" if failed port 3306 protocol mysql then restart if 5 restarts within 5 cycles then timeout My application, which is configured to connect to MySQL via localhost:3306, is running just fine and can access the database. I can even use MySQL Query Browser to connect to the database remotely via port 3306. The port is totally open and possible to connect to. Therefore, I'm pretty darn certain that it's running. However, running monit -v reveals that Monit cannot detect MySQL on that port. 'mysqld' failed, cannot open a connection to INET[localhost:3306] via TCP This happens consistently, until Monit decides not to track MySQL anymore, as configured. How can I begin to troubleshoot this issue?

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• Ubuntu 12, limit the resolution to 640x480

  - by TimothyP

  How can I set and limit the resolution in Ubuntu 12 to 640x480 There's not much in the xorg.conf file anymore, so I'm guessing this is no longer the place to do it? I can't do it using the GUI either because it doesn't show me the 640x480 option. While setting the resolution the computer is connected to a normal screen but later it will be connected to a screen that only supports 640x480 and doesn't report its supported modes to the computer. The only thing in my xorg.conf (by default) is this: Section "Device" Identifier "Default Device" Option "NoLogo" "True" EndSection

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• black backgrounds appear grey on gnome-terminal

  - by Martin DeMello

  Running gnome under Ubuntu Lucid $ env | grep TERM TERM=xterm COLORTERM=gnome-terminal I had to edit both my .muttrc and my vim colorscheme to change the background color from black to none in order to get a proper black background (or, more accurately, to retain the terminal's default black background). Setting it to black resulted in a dark grey background. This only happens with gnome-terminal; konsole, xterm and rxvt are fine.

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• Is the /etc/inittab file read top down?

  - by PeanutsMonkey

  When the init process is executed when the kernel has loaded, does it read the /etc/inittab file in a top down approach i.e. it executes each line as it appears in the file. If so and based on my reading and understanding, does this mean that it enters the documented run level and then launch sysinit process or vice versa? For example the common examples I have seen are id:3:initdefault: # System initialization. si::sysinit:/etc/rc.d/rc.sysinit

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• "make menuconfig" throwing cannot find -lc error in my Fedora 11 PC

  - by Sen

  When i try to do a make menuconfig in a Fedora 11 machine it is throwing the following error message: [root@PC04 kernel]# make menuconfig HOSTCC -static scripts/basic/fixdep scripts/basic/fixdep.c: In function âtrapsâ: scripts/basic/fixdep.c:377: warning: dereferencing type-punned pointer will break strict-aliasing rules scripts/basic/fixdep.c:379: warning: dereferencing type-punned pointer will break strict-aliasing rules /usr/bin/ld: cannot find -lc collect2: ld returned 1 exit status make[1]: *** [scripts/basic/fixdep] Error 1 make: *** [scripts_basic] Error 2 Please help me on this issue? How can i solve this? Thanks, Sen

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• postfix smtp relay script

  - by Peter Sander

  I have a Postfix server and using it with Outlook (POP/SMTP). I have different sender addresses for an account. Now I want to configure a relay for a specific sender address. For example I have postfix for my main domain domain1.com. Now I have a sender address that is domain2.com. For that sender address I want that postfix to relay mail to a second SMTP server. I think that should be possible without problems. But the problem is that I have to create a SSH tunnel to the second server to connect to the SMTP server. But I cant use a persistent SSH connection so I want to know if it is possible that postfix executes some script before relaying the mail to the second SMTP server. I already found some information for executing a script when incomming emails but I only want to establish the SSH tunnel before postfix relays the mail to the second SMTP server.

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• Grub hangs at "Starting up ..." when USB flash card reader is plugged in (on Ubuntu Hardy)

  - by Laurence Gonsalves

  I have a PC with Ubuntu Hardy installed. The machine boots fine unless my USB flash card reader (one of those N-in-1 readers by MediaGear) is plugged in at startup. If the reader is plugged in, the boot process proceeds as normal until it gets to the screen that says "Starting up ...". At that point it just hangs forever. To work around this I currently leave the reader unplugged when booting, and then plug it back in after I see that Ubuntu is actually starting. This is annoying though, especially when I reboot the machine (typically for updates), forget to unplug the reader, and walk away only to come back hours later to find the machine hung. My guess is that the presence of the reader is confusing Grub about where to find the kernel. The weird thing is that Grub is on the same drive as the kernel I want it to boot so clearly the drive is still readable even when the flash card reader is plugged in. Is there some way I can tell Grub to never go looking on the flash card reader?

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• squid running out of sockets

  - by drscroogemcduck

  I have a setup where squid sits in front of a java server and acts as a reverse proxy. Recently i've load tested the site and if i fire 100 threads at it each making a request using jmeter i start getting errors in my load test tool like 'no route to host' even though the load test tool and the server are on the same machine. if i run the following command where port 82 is the port my squid server is running on: netstat -ann | grep 82 | wc -l i get 22000 or something and most of them are in TIMED_WAIT. i'm thinking that maybe the huge number of sockets in the TIMED_WAIT state are starving the box of resources.

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• Extract specific files in a tar archive using a wildcard

  - by AdrieanKhisbe

  I'm tring for a script to extract only jpeg pictures from an archive containing maky kind of files. To do so I tried first to use: tar -xf MyTar.tar *.jpg but it failed (*.jpg not found) and suggest me to use "--wildcard". So I tried tar -xf MyTar.tar --wildcard *.jpg I did that, but then the same error and a different warning saying yo me that the option "--wildcard" is ambigious. I've been over the manuel pages for tar, but didn't find a clue about the problem thanks

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• Unattended Kickstart Install

  - by Eric

  I've looked around quite a bit and have seen similar setup and questions, but none seem to work for me. I'm using the following command to create a custom ISO: /usr/bin/livecd-creator --config=/usr/share/livecd-tools/test.ks --fslabel=TestAppliance --cache=/var/cache/live This works great and it creates the ISO with all of the packages and configs I want on it. My issue is that I want the install to be unattended. However, every time I start the CD, it asks for all of the info such as keyboard, time zone, root password, etc. These are my basic settings I have in my kickstart script prior to the packages section. cdrom install autopart autostep xconfig --startxonboot rootpw testpassword lang en_US.UTF-8 keyboard us timezone --utc America/New_York auth --useshadow --enablemd5 selinux --disabled services --enabled=iptables,rsyslog,sshd,ntpd,NetworkManager,network --disabled=sendmail,cups,firstboot,ip6tables clearpart --all So after looking around, I was told that I need to modify my isolinux.cfg file to either do "ks=http://X.X.X.X/location/to/test.ks" or "ks=cdrom:/test.ks". I've tried both methods and it still forces me to go through the install process. When I tail the apache logs on the server, I see that the ISO never even tries to get the file. Below are the exact syntax I'm trying on my isolinux.cfg file. label http menu label HTTP kernel vmlinuz0 append initrd=initrd0.img ks=http://192.168.56.101/files/test.ks ksdevice=eth0 label localks menu label LocalKS kernel vmlinuz0 append initrd=initrd0.img ks=cdrom:/test.ks label install0 menu label Install kernel vmlinuz0 append initrd=initrd0.img root=live:CDLABEL=PerimeterAppliance rootfstype=auto ro liveimg liveinst noswap rd_NO_LUKS rd_NO_MD rd_NO_DM menu default EOF_boot_menu The first 2 give me a "dracut: fatal: no or empty root=" error until I give it a root= option and then it just skips the kickstart completely. The last one is my default option that works fine, but just requires a lot of user input. Any help would be greatly appreciated.

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