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  • Unknown user 'app' with capistrano

    - by trobrock
    This is my first time trying to set up capistrano to deploy a rails application. I am deploying from my local machine to my remote server that has the repo, web, app, and mysql servers all on the same machine. I am following this walk through: http://www.capify.org/index.php/From_The_Beginning I get to the command cap deploy:start Then I get this error: *** [err :: example.com] sudo: unknown user: app command finished failed: "sh -c 'cd /var/www/example/current && sudo -p '\\''sudo password: '\\'' -u app nohup script/spin'" on example.com Am I supposed to add an 'app' user, or is there a way of changing what user the command runs as? This is my deploy.rb: set :application, "example" set :repository, "[email protected]:example.git" set :user, "trobrock" set :branch, 'master' set :deploy_to, "/var/www/example" set :scm, :git # Or: `accurev`, `bzr`, `cvs`, `darcs`, `git`, `mercurial`, `perforce`, `subversion` or `none` role :web, "example.com" # Your HTTP server, Apache/etc role :app, "example.com" # This may be the same as your `Web` server role :db, "example.com", :primary => true # This is where Rails migrations will run And obviously everywhere it says example.com is my servers hostname and every it just says example is the app name.

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  • Why does presentModalViewController not always work?

    - by E-Madd
    My application requires data from a server in order to run. The first thing it does is displays a view controller (LoadingViewController) that is responsible for checking if the data is saved to my PersistentStoreCoordinator. If the data isn't cached locally, it gets it from my server and caches it, and posts a notification that the LoadingViewController is listening for. When that notification comes through, LoadingViewController presents the application's MainViewController using the presentModalViewController with a flip animation. So far, so good... no errors. However, if the application loads and determines the data IS cached - the presentModalViewController does not work and the main application view never appears. No errors. I've even gone as far as adding a button to the Loading view that executes the same code when pressed and the damn thing works. I'm suspicious it has something to do with the timing of it all but I'm clueless as to what I can do to ensure the view is displayed with that flipping animation if the data is already cached locally. Any suggestions?

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  • getaddrinfo appears to return different results between Windows and Ubuntu?

    - by MrDuk
    I have the following two sets of code: Windows #undef UNICODE #include <winsock2.h> #include <ws2tcpip.h> #include <stdio.h> // link with Ws2_32.lib #pragma comment (lib, "Ws2_32.lib") int __cdecl main(int argc, char **argv) { //----------------------------------------- // Declare and initialize variables WSADATA wsaData; int iResult; INT iRetval; DWORD dwRetval; argv[1] = "www.google.com"; argv[2] = "80"; int i = 1; struct addrinfo *result = NULL; struct addrinfo *ptr = NULL; struct addrinfo hints; struct sockaddr_in *sockaddr_ipv4; // struct sockaddr_in6 *sockaddr_ipv6; LPSOCKADDR sockaddr_ip; char ipstringbuffer[46]; DWORD ipbufferlength = 46; /* // Validate the parameters if (argc != 3) { printf("usage: %s <hostname> <servicename>\n", argv[0]); printf("getaddrinfo provides protocol-independent translation\n"); printf(" from an ANSI host name to an IP address\n"); printf("%s example usage\n", argv[0]); printf(" %s www.contoso.com 0\n", argv[0]); return 1; } */ // Initialize Winsock iResult = WSAStartup(MAKEWORD(2, 2), &wsaData); if (iResult != 0) { printf("WSAStartup failed: %d\n", iResult); return 1; } //-------------------------------- // Setup the hints address info structure // which is passed to the getaddrinfo() function ZeroMemory( &hints, sizeof(hints) ); hints.ai_family = AF_UNSPEC; hints.ai_socktype = SOCK_STREAM; // hints.ai_protocol = IPPROTO_TCP; printf("Calling getaddrinfo with following parameters:\n"); printf("\tnodename = %s\n", argv[1]); printf("\tservname (or port) = %s\n\n", argv[2]); //-------------------------------- // Call getaddrinfo(). If the call succeeds, // the result variable will hold a linked list // of addrinfo structures containing response // information dwRetval = getaddrinfo(argv[1], argv[2], &hints, &result); if ( dwRetval != 0 ) { printf("getaddrinfo failed with error: %d\n", dwRetval); WSACleanup(); return 1; } printf("getaddrinfo returned success\n"); // Retrieve each address and print out the hex bytes for(ptr=result; ptr != NULL ;ptr=ptr->ai_next) { printf("getaddrinfo response %d\n", i++); printf("\tFlags: 0x%x\n", ptr->ai_flags); printf("\tFamily: "); switch (ptr->ai_family) { case AF_UNSPEC: printf("Unspecified\n"); break; case AF_INET: printf("AF_INET (IPv4)\n"); sockaddr_ipv4 = (struct sockaddr_in *) ptr->ai_addr; printf("\tIPv4 address %s\n", inet_ntoa(sockaddr_ipv4->sin_addr) ); break; case AF_INET6: printf("AF_INET6 (IPv6)\n"); // the InetNtop function is available on Windows Vista and later // sockaddr_ipv6 = (struct sockaddr_in6 *) ptr->ai_addr; // printf("\tIPv6 address %s\n", // InetNtop(AF_INET6, &sockaddr_ipv6->sin6_addr, ipstringbuffer, 46) ); // We use WSAAddressToString since it is supported on Windows XP and later sockaddr_ip = (LPSOCKADDR) ptr->ai_addr; // The buffer length is changed by each call to WSAAddresstoString // So we need to set it for each iteration through the loop for safety ipbufferlength = 46; iRetval = WSAAddressToString(sockaddr_ip, (DWORD) ptr->ai_addrlen, NULL, ipstringbuffer, &ipbufferlength ); if (iRetval) printf("WSAAddressToString failed with %u\n", WSAGetLastError() ); else printf("\tIPv6 address %s\n", ipstringbuffer); break; case AF_NETBIOS: printf("AF_NETBIOS (NetBIOS)\n"); break; default: printf("Other %ld\n", ptr->ai_family); break; } printf("\tSocket type: "); switch (ptr->ai_socktype) { case 0: printf("Unspecified\n"); break; case SOCK_STREAM: printf("SOCK_STREAM (stream)\n"); break; case SOCK_DGRAM: printf("SOCK_DGRAM (datagram) \n"); break; case SOCK_RAW: printf("SOCK_RAW (raw) \n"); break; case SOCK_RDM: printf("SOCK_RDM (reliable message datagram)\n"); break; case SOCK_SEQPACKET: printf("SOCK_SEQPACKET (pseudo-stream packet)\n"); break; default: printf("Other %ld\n", ptr->ai_socktype); break; } printf("\tProtocol: "); switch (ptr->ai_protocol) { case 0: printf("Unspecified\n"); break; case IPPROTO_TCP: printf("IPPROTO_TCP (TCP)\n"); break; case IPPROTO_UDP: printf("IPPROTO_UDP (UDP) \n"); break; default: printf("Other %ld\n", ptr->ai_protocol); break; } printf("\tLength of this sockaddr: %d\n", ptr->ai_addrlen); printf("\tCanonical name: %s\n", ptr->ai_canonname); } freeaddrinfo(result); WSACleanup(); return 0; } Ubuntu /* ** listener.c -- a datagram sockets "server" demo */ #include <stdio.h> #include <stdlib.h> #include <unistd.h> #include <errno.h> #include <string.h> #include <sys/types.h> #include <sys/socket.h> #include <netinet/in.h> #include <arpa/inet.h> #include <netdb.h> #define MYPORT "4950" // the port users will be connecting to #define MAXBUFLEN 100 // get sockaddr, IPv4 or IPv6: void *get_in_addr(struct sockaddr *sa) { if (sa->sa_family == AF_INET) { return &(((struct sockaddr_in*)sa)->sin_addr); } return &(((struct sockaddr_in6*)sa)->sin6_addr); } int main(void) { int sockfd; struct addrinfo hints, *servinfo, *p; int rv; int numbytes; struct sockaddr_storage their_addr; char buf[MAXBUFLEN]; socklen_t addr_len; char s[INET6_ADDRSTRLEN]; memset(&hints, 0, sizeof hints); hints.ai_family = AF_UNSPEC; // set to AF_INET to force IPv4 hints.ai_socktype = SOCK_DGRAM; hints.ai_flags = AI_PASSIVE; // use my IP if ((rv = getaddrinfo(NULL, MYPORT, &hints, &servinfo)) != 0) { fprintf(stderr, "getaddrinfo: %s\n", gai_strerror(rv)); return 1; } // loop through all the results and bind to the first we can for(p = servinfo; p != NULL; p = p->ai_next) { if ((sockfd = socket(p->ai_family, p->ai_socktype, p->ai_protocol)) == -1) { perror("listener: socket"); continue; } if (bind(sockfd, p->ai_addr, p->ai_addrlen) == -1) { close(sockfd); perror("listener: bind"); continue; } break; } if (p == NULL) { fprintf(stderr, "listener: failed to bind socket\n"); return 2; } freeaddrinfo(servinfo); printf("listener: waiting to recvfrom...\n"); addr_len = sizeof their_addr; if ((numbytes = recvfrom(sockfd, buf, MAXBUFLEN-1 , 0, (struct sockaddr *)&their_addr, &addr_len)) == -1) { perror("recvfrom"); exit(1); } printf("listener: got packet from %s\n", inet_ntop(their_addr.ss_family, get_in_addr((struct sockaddr *)&their_addr), s, sizeof s)); printf("listener: packet is %d bytes long\n", numbytes); buf[numbytes] = '\0'; printf("listener: packet contains \"%s\"\n", buf); close(sockfd); return 0; } When I attempt www.google.com, I don't get the ipv6 socket returned on Windows - why is this? Outputs: (ubuntu) caleb@ub1:~/Documents/dev/cs438/mp0/MP0$ ./a.out www.google.com IP addresses for www.google.com: IPv4: 74.125.228.115 IPv4: 74.125.228.116 IPv4: 74.125.228.112 IPv4: 74.125.228.113 IPv4: 74.125.228.114 IPv6: 2607:f8b0:4004:803::1010 Outputs: (win) Calling getaddrinfo with following parameters: nodename = www.google.com servname (or port) = 80 getaddrinfo returned success getaddrinfo response 1 Flags: 0x0 Family: AF_INET (IPv4) IPv4 address 74.125.228.114 Socket type: SOCK_STREAM (stream) Protocol: Unspecified Length of this sockaddr: 16 Canonical name: (null) getaddrinfo response 2 Flags: 0x0 Family: AF_INET (IPv4) IPv4 address 74.125.228.115 Socket type: SOCK_STREAM (stream) Protocol: Unspecified Length of this sockaddr: 16 Canonical name: (null) getaddrinfo response 3 Flags: 0x0 Family: AF_INET (IPv4) IPv4 address 74.125.228.116 Socket type: SOCK_STREAM (stream) Protocol: Unspecified Length of this sockaddr: 16 Canonical name: (null) getaddrinfo response 4 Flags: 0x0 Family: AF_INET (IPv4) IPv4 address 74.125.228.112 Socket type: SOCK_STREAM (stream) Protocol: Unspecified Length of this sockaddr: 16 Canonical name: (null) getaddrinfo response 5 Flags: 0x0 Family: AF_INET (IPv4) IPv4 address 74.125.228.113 Socket type: SOCK_STREAM (stream) Protocol: Unspecified Length of this sockaddr: 16 Canonical name: (null)

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  • should variable be released or not? iphone-sdk

    - by psebos
    Hi, In the following piece of code (from a book) data is an NSDictionary *data; defined in the header (no property). In the viewDidLoad of the controller the following occurs: - (void)viewDidLoad { [super viewDidLoad]; NSArray *keys = [NSArray arrayWithObjects:@"home", @"work", nil]; NSArray *homeDVDs = [NSArray arrayWithObjects:@"Thomas the Builder", nil]; NSArray *workDVDs = [NSArray arrayWithObjects:@"Intro to Blender", nil]; NSArray *values = [NSArray arrayWithObjects:homeDVDs, workDVDs, nil]; data = [[NSDictionary alloc] initWithObjects:values forKeys:keys]; } Since I am really new to objective-c can someone explain to me why I do not have to retain the variables keys,homeDVDs,workDVDs and values prior exiting the function? I would expect prior the data allocation something like: [keys retain]; [homeDVDs retain]; [workDVDs retain]; [values retain]; or not? Does InitWithObjects copies (recursively) all objects into a new table? Assuming we did not have the last line (data allocation) should we release all the NSArrays prior exiting the function (or we could safely assumed that all NSArrays will be autoreleased since there is no alloc for each one?) Thanks!!!!

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  • Returning content directly from memcache - Django / HTTP Server

    - by RadiantHex
    Hi folks, I've built a web application with Django, I'm using Memcached in order to cache data. A few views cache the whole HttpResponse objects, therefore there might be a better alternative for returning the Memcached data other than going through Django. What could be faster alternatives for returning Memcached data on HTTP Requests ? I'm trying to make the operation as fast and lightweight as possible. Help would be much appreciated! :)

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  • How to parse rss from a php page, using jQuery/jFeed?

    - by ricebowl
    I'm trying to fumble my way through parsing rss sensibly, using jQuery and jFeed. Because of the same origin policy I'm pulling the BBC's health news feed into a local page (http://www.davidrhysthomas.co.uk/play/proxy.php). Originally this was just the same proxy.php script as available in the jFeed download package, but due to my host's disabling allow_url_fopen() I've amended the php to the following: $url = "http://newsrss.bbc.co.uk/rss/newsonline_uk_edition/health/rss.xml"; $ch = curl_init(); curl_setopt($ch, CURLOPT_URL, $url); curl_setopt($ch, CURLOPT_HEADER, 0); curl_setopt($ch, CURLOPT_RETURNTRANSFER, 1); $data = curl_exec($ch); echo "$data"; curl_close($ch); Which seems to generate the same/comparable contents as the original fopen on my local machine. Now that seems to be working, I'm looking at setting the jFeed script up to work with the page and, to my embarrassment, don't see how. I understand that, at the least, this should work: jQuery.getFeed({ url: 'http://www.davidrhysthomas.co.uk/play/proxy.php', success: function(feed) { alert(feed.title); } }); ...but, as I'm sure you anticipate, it doesn't. What non-output there is, is available for your perusal here: http://www.davidrhysthomas.co.uk/play/exampleTest.html. And I honestly don't have a clue what to do about it. If anyone could offer some pointers, tips, hints, or, at a pinch, a quick slap around the cheeks and a 'pull yourself together!' it'd be much appreciated... Thanks in advance =)

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  • problem with custom NSProtocol and caching on iPhone

    - by TomSwift
    My iPhone app embeds a UIWebView which loads html via a custom NSProtocol handler I have registered. My problem is that resources referenced in the returned html, which are also loaded via my custom protocol handler, are cached and never reloaded. In particular, my stylesheet is cached: <link rel="stylesheet" type="text/css" href="./styles.css" /> The initial request to load the html in the UIWebView looks like this: NSString* strUrl = [NSMutableString stringWithFormat: @"myprotocol:///entry?id=%d", entryID ]; NSURL* url = [NSURL URLWithString: strUrl]; [_pCurrentWebView loadRequest: [NSURLRequest requestWithURL: url cachePolicy: NSURLRequestReloadIgnoringLocalCacheData timeoutInterval: 60 ]]; (note the cache policy is set to ignore, and I've verified this cache policy carries through to subsequent requests for page resources on the initial load) The protocol handler loads the html from a database and returns it to the client using code like this: // create the response record NSURLResponse *response = [[NSURLResponse alloc] initWithURL: [request URL] MIMEType: mimeType expectedContentLength: -1 textEncodingName: textEncodingName]; // get a reference to the client so we can hand off the data id client = [self client]; // turn off caching for this response data [client URLProtocol: self didReceiveResponse:response cacheStoragePolicy: NSURLCacheStorageNotAllowed]; // set the data in the response to our jfif data [client URLProtocol: self didLoadData:data]; [data release]; (Note the response cache policy is "not allowed"). Any ideas how I can make it NOT cache my styles.css resource? I need to be able to dynamically alter the content of this resource on subsequent loads of html that references this file. I thought clearing the shared url cache would work, but it doesnt: [[NSURLCache sharedURLCache] removeAllCachedResponses]; One thing that does work, but it's terribly inefficient, is to dynamically cache-bust the url for the stylesheet by adding a timestamp parameter: <link rel="stylesheet" type="text/css" href="./styles.css?ts=1234567890" /> To make this work I have to load my html from the db, search and replace the url for the stylesheet with a cache-busting parameter that changes on each request. I'd rather not do this. My presumption is that there is no problem if I were to load my content via the built-in HTTP protocol. In that case, I'm guessing that the UIWebView looks at any Cache-Control flags in the NSURLHTTPResponse object's http headers and abides by them. Since my NSURLResponseObject has no http headers (it's not http...) then perhaps UIWebView just decides to cached the resource (ignoring the NSURLRequest caching directive?). Ideas???

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  • Image rendering on browser or temporary images?

    - by Muralha
    I'm trying to make a statistics page where it will show several data and charts. The charts need to be pictures so that the user can save it/drag-and-drop to his/her personal reports. I'm using Gruff Graphs for Ruby to produce the charts but I don't know the best way to display the results safe and protected. Some of my ideas/tries are: save the chart to a file (jpg, png)? problem: data is available to anyone (don't have access to cron, to delete data from time to time) render in the browser (has to work on IE)? Use javascript (Raphaël—JavaScript Library) or Google API and output a PDF report (need plugin or gem, right)? use send_data? i've tried to output other way than inline, because I needs to show other data, is it possible? Thanks for any help.

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  • #include in .h or .c / .cpp ?

    - by Louise
    Hi, When coding in either C or C++, where should I have the #include's? callback.h: #ifndef _CALLBACK_H_ #define _CALLBACK_H_ #include <sndfile.h> #include "main.h" void on_button_apply_clicked(GtkButton* button, struct user_data_s* data); void on_button_cancel_clicked(GtkButton* button, struct user_data_s* data); #endif callback.c: #include <stdlib.h> #include <math.h> #include "config.h" #include "callback.h" #include "play.h" void on_button_apply_clicked(GtkButton* button, struct user_data_s* data) { gint page; page = gtk_notebook_get_current_page(GTK_NOTEBOOK(data->notebook)); ... Should all includes be in either the .h or .c / .cpp, or both like I have done here?

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  • Cocoa Touch - Display an Activity Indicator while loading a UITabBar View

    - by Aurum Aquila
    I have a UITabBar Application with two views that load large amounts of data from the web in their "viewWillAppear" methods. I want to show a progress bar or an activity indicator while this data is being retrieved, to make sure the user knows the app isn't frozen. I am aware that this has been asked before. I simply need some clarification on what seems to be a rather good solution. I have implimented the code in the example. The question's original asker later solved their problem, by putting the retrieval of data into another "thread". I understand the concept of threads, but I do not know how I would impliment this. With research, I have found that I need to move all of my heavy data retrieval into a background thread, as all of the UI updating occurs in the main thread. If one would be so kind as to provide an example for me, I would be very appreciative. I can provide parts of my existing code as necessary.

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  • Testing ASP.NET security in Firefox

    - by blahblah
    I'm not sure whether this question belongs on StackOverflow or SuperUser, but here goes nothing... I'm trying to test out some basic security problems on my personal ASP.NET website to see exactly how the custom validators, etc. work when tampering with the data. I've been looking at the Firefox extension TamperData which seems to do the trick, but it doesn't feel very professional at all. The issues I'm having with TamperData is that the textbox for the POST data is way too small to hold the ASP.NET view-state, so I have to copy that data into Emacs and then back again to be productive at all. I also don't like that there doesn't seem to be an option to only tamper with data which is from/to localhost. Any ideas on better extensions for the task or better methods to test it?

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  • Strange problem with NSMutableArray - Possibly some memory corruption

    - by user210504
    Hi! I am trying to update data in a table view using a NSMutableArray. Quite simple :( What is happening is that I get my data from a NSURLConnection Callback, which I parse and store it in an array and call reload data on the table view. The problem is that when cellForRowAtIndexPath is called back by the framework. The array still shows the correct count of the elements but all string objects I had stored earlier are shown as invalid. Any pointers

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  • Using ember-resource with couchdb - how can i save my documents?

    - by Thomas Herrmann
    I am implementing an application using ember.js and couchdb. I choose ember-resource as database access layer because it nicely supports nested JSON documents. Since couchdb uses the attribute _rev for optimistic locking in every document, this attribute has to be updated in my application after saving the data to the couchdb. My idea to implement this is to reload the data right after saving to the database and get the new _rev back with the rest of the document. Here is my code for this: // Since we use CouchDB, we have to make sure that we invalidate and re-fetch // every document right after saving it. CouchDB uses an optimistic locking // scheme based on the attribute "_rev" in the documents, so we reload it in // order to have the correct _rev value. didSave: function() { this._super.apply(this, arguments); this.forceReload(); }, // reload resource after save is done, expire to make reload really do something forceReload: function() { this.expire(); // Everything OK up to this location Ember.run.next(this, function() { this.fetch() // Sub-Document is reset here, and *not* refetched! .fail(function(error) { App.displayError(error); }) .done(function() { App.log("App.Resource.forceReload fetch done, got revision " + self.get('_rev')); }); }); } This works for most cases, but if i have a nested model, the sub-model is replaced with the old version of the data just before the fetch is executed! Interestingly enough, the correct (updated) data is stored in the database and the wrong (old) data is in the memory model after the fetch, although the _rev attribut is correct (as well as all attributes of the main object). Here is a part of my object definition: App.TaskDefinition = App.Resource.define({ url: App.dbPrefix + 'courseware', schema: { id: String, _rev: String, type: String, name: String, comment: String, task: { type: 'App.Task', nested: true } } }); App.Task = App.Resource.define({ schema: { id: String, title: String, description: String, startImmediate: Boolean, holdOnComment: Boolean, ..... // other attributes and sub-objects } }); Any ideas where the problem might be? Thank's a lot for any suggestion! Kind regards, Thomas

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  • Problem in displaying numbers in Flex AdvancedDataGrid

    - by user211607
    Hi, I am able to display any data (numbers) in Flex AdvancedDataGrid except data with lot of digits after decimal places (0.000000000029103830456733704) or exponential numbers (293E-17). Grid is displaying -17 instead of 293E-17. Is it happening because of any limit to displaying data range in grid? If yes, what is the limit? Thanks in advance ... Atul

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  • Making a query result equal to zero when a condition is null

    - by John
    Hello, I believe the query below should work. However, when I run it, the results are blank. I think this is happening since for now, the table "comment" is empty. So there is no instance where s.submissionid = c.submissionid. I would like to have the query below to work even if there if no s.submissionid that equals a c.submissionid. In this case, I would like countComments to equal zero. How can I do this? Thanks in advance, John $sqlStr = "SELECT s.loginid, s.submissionid s.title, s.url, s.displayurl, l.username, count(c.comment) AS countComments FROM submission AS s, login AS l, comment AS c, WHERE s.loginid = l.loginid AND s.submissionid = c.submissionid GROUP BY s.loginid, s.submissionid s.title, s.url, s.displayurl, l.username ORDER BY s.datesubmitted DESC LIMIT 10"; $result = mysql_query($sqlStr); $arr = array(); echo "<table class=\"samplesrec\">"; while ($row = mysql_fetch_array($result)) { echo '<tr>'; echo '<td class="sitename1"><a href="http://www.'.$row["url"].'">'.$row["title"].'</a></td>'; echo '</tr>'; echo '<tr>'; echo '<td class="sitename2"><a href="http://www...com/sandbox/members/index.php?profile='.$row["username"].'">'.$row["username"].'</a><a href="http://www...com/sandbox/comments/index.php?submission='.$row["title"].'">'.$row["countComments"].'</a></td>'; echo '</tr>'; } echo "</table>";

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  • MySQL Column Value Pivot

    - by manyxcxi
    I have a MySQL InnoDB table laid out like so: id (int), run_id (int), element_name (varchar), value (text), line_order, column_order `MyDB`.`MyTable` ( `id` bigint(20) NOT NULL, `run_id` int(11) NOT NULL, `element_name` varchar(255) NOT NULL, `value` text, `line_order` int(11) default NULL, `column_order` int(11) default NULL It is used to store data generated by a Java program that used to output this in CSV format, hence the line_order and column_order. Lets say I have 2 entries (according to the table description): 1,1,'ELEMENT 1','A',0,0 2,1,'ELEMENT 2','B',0,1 I want to pivot this data in a view for reporting so that it would look like more like the CSV would, where the output would look this: --------------------- |ELEMENT 1|ELEMENT 2| --------------------- | A | B | --------------------- The data coming in is extremely dynamic; it can be in any order, can be any of over 900 different elements, and the value could be anything. The Run ID ties them all together, and the line and column order basically let me know where the user wants that data to come back in order.

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  • R: Why does read.table stop reading a file?

    - by Mike Dewar
    I have a file, called genes.txt, which I'd like to become a data.frame. It's got a lot of lines, each line has three, tab delimited fields: mike$ wc -l genes.txt 42476 genes.txt I'd like to read this file into a data.frame in R. I use the command read.table, like this: genes = read.table( genes_file, sep="\t", na.strings="-", fill=TRUE, col.names=c("GeneSymbol","synonyms","description") ) Which seems to work fine, where genes_file points at genes.txt. However, the number of lines in my data.frame is significantly less than the number of lines in my text file: > nrow(genes) [1] 27896 and things I can find in the text file: mike$ grep "SELL" genes.txt SELL CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1 selectin L don't seem to be in the data.frame > grep("SELL",genes$GeneSymbol) integer(0) it turns out that genes = read.delim( genes_file, header=FALSE, na.strings="-", fill=TRUE, col.names=c("GeneSymbol","synonyms","description"), ) works just fine. Why does read.delim work when read.table not? If it's of use, you can recreate genes.txt using the following commands which you should run from a command line curl -O ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz gzip -cd gene_info.gz | awk -Ft '$1==9606{print $3 "\t" $5 "\t" $9}' > genes.txt be warned, though, that gene_info.gz is 101MBish.

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  • Views performance in MySQL

    - by Gianluca Bargelli
    I am currently writing my truly first PHP Application and i would like to know how to project/design/implement MySQL Views properly; In my particular case User data is spread across several tables (as a consequence of Database Normalization) and i was thinking to use a View to group data into one large table: CREATE VIEW `Users_Merged` ( name, surname, email, phone, role ) AS ( SELECT name, surname, email, phone, 'Customer' FROM `Customer` ) UNION ( SELECT name, surname, email, tel, 'Admin' FROM `Administrator` ) UNION ( SELECT name, surname, email, tel, 'Manager' FROM `manager` ); This way i can use the View's data from the PHP app easily but i don't really know how much this can affect performance. For example: SELECT * from `Users_Merged` WHERE role = 'Admin'; Is the right way to filter view's data or should i filter BEFORE creating the view itself? (I need this to have a list of users and the functionality to filter them by role).

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  • Please help debug this ASP.Net [VB] code. Trying to write to text file from SQL Server DB.

    - by NJTechGuy
    I am a PHP programmer. I have no .Net coding experience (last seen it 4 years ago). Not interested in code-behind model since this is a quick temporary hack. What I am trying to do is generate an output.txt file whenever the user submits new data. So an output.txt file if exists should be replaced with the new one. I want to write data in this format : 123|Java Programmer|2010-01-01|2010-02-03 124|VB Programmer|2010-01-01|2010-02-03 125|.Net Programmer|2010-01-01|2010-02-03 I don't know VB, so not sure about string manipulations. Hope a kind soul can help me with this. I will be grateful to you. Thank you :) <%@ Import Namespace="System.IO" %> <%@ Import Namespace="System.Data" %> <%@ Import Namespace="System.Data.SqlClient" %> <script language="vb" runat="server"> sub Page_Load(sender as Object, e as EventArgs) Dim sqlConn As New SqlConnection("Data Source=winsqlus04.1and1.com;Initial Catalog=db28765269;User Id=dbo2765469;Password=ByhgstfH;") Dim myCommand As SqlCommand Dim dr As SqlDataReader Dim FILENAME as String = Server.MapPath("Output4.txt") Dim objStreamWriter as StreamWriter ' If Len(Dir$(FILENAME)) > 0 Then Kill(FILENAME) objStreamWriter = File.AppendText(FILENAME) Try sqlConn.Open() 'opening the connection myCommand = New SqlCommand("SELECT id, title, CONVERT(varchar(10), expirydate, 120) AS [expirydate],CONVERT(varchar(10), creationdate, 120) AS [createdate] from tblContact where flag = 0 AND ACTIVE = 1", sqlConn) 'executing the command and assigning it to connection dr = myCommand.ExecuteReader() While dr.Read() objStreamWriter.WriteLine("JobID: " & dr(0).ToString()) objStreamWriter.WriteLine("JobID: " & dr(2).ToString()) objStreamWriter.WriteLine("JobID: " & dr(3).ToString()) End While dr.Close() sqlConn.Close() Catch x As Exception End Try objStreamWriter.Close() Dim objStreamReader as StreamReader objStreamReader = File.OpenText(FILENAME) Dim contents as String = objStreamReader.ReadToEnd() lblNicerOutput.Text = contents.Replace(vbCrLf, "<br>") objStreamReader.Close() end sub </script> <asp:label runat="server" id="lblNicerOutput" Font-Name="Verdana" />

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  • How to cache YUI DataSource?

    - by Matt McCormick
    I'm setting up a YUI DataTable with filtering by following the steps on the YUI site However, I am using JSON as the DataSource ResponseType. When I type in a value to filter, the request will be sent to the server again. I find this to be wasteful as all the data has already been retrieved the first time. Is there a way to cache the initial data returned and then filter only according to that data so another AJAX request does not have to be made?

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  • Properties vs. Fields: Need help grasping the uses of Properties over Fields.

    - by pghtech
    First off, I have read through a list of postings on this topic and I don't feel I have grasped properties because of what I had come to understand about encapsulation and field modifiers (private, public..ect). One of the main aspects of C# that I have come to learn is the importance of data protection within your code by the use of encapsulation. I 'thought' I understood that to be because of the ability of the use of the modifiers (private, public, internal, protected). However, after learning about properties I am sort of torn in understanding not only properties uses, but the overall importance/ability of data protection (what I understood as encapsulation) within C#. To be more specific, everything I have read when I got to properties in C# is that you should try to use them in place of fields when you can because of: 1) they allow you to change the data type when you can't when directly accessing the field directly. 2) they add a level of protection to data access However, from what I 'thought' I had come to know about the use of field modifiers did #2, it seemed to me that properties just generated additional code unless you had some reason to change the type (#1) - because you are (more or less) creating hidden methods to access fields as opposed to directly. Then there is the whole modifiers being able to be added to Properties which further complicates my understanding for the need of properties to access data. I have read a number of chapters from different writers on "properties" and none have really explained a good understanding of properties vs. fields vs. encapsulation (and good programming methods). Can someone explain: 1) why I would want to use properties instead of fields (especially when it appears I am just adding additional code 2) any tips on recognizing the use of properties and not seeing them as simply methods (with the exception of the get;set being apparent) when tracing other peoples code? 3) Any general rules of thumb when it comes to good programming methods in relation to when to use what? Thanks and sorry for the long post - I didn't want to just ask a question that has been asked 100x without explaining why I am asking it again.

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  • Creating a proper CMS thoughts

    - by dallasclark
    I'm just about to expand the functionality of our own CMS but was thinking of restructuring the database to make it simpler to add/edit data types and values. Currently, the CMS is quite flat - the CMS requires a field in the database for every type of stored value. The first option that comes to mind is simply a table which keeps the data types (ie: Address 1, Suburb, Email Address etc) and another table which holds values for each of these data types. Just like how Wordpress keeps values in the 'options' table, serialize would be used to store an array of values. The second option is how Drupal works, the CMS creates tables for every data type. Unlike Wordpress, this can be a bit of an overkill but really useful for SQL queries when ordering and grouping by a particular value. What's everyone's thoughts?

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  • I cannot connect to SQL Server Express using VB.NET

    - by konin
    Can someone tell me what I am missing? I am using this connection string to connect to my database and still it won't connect: Dim str As String = "Provider = .NET Framework Data Provider for SQL Server; Data Source=C:\Users\konin\Documents\UHMS\bin\Debug\UHMS.mdf;Integrated Security=True;Connect Timeout=30;User Instance=True" This is the process I used to get the data source: right-click the database select properties and click select data source I hope I am clear enough. Thanks for reading. Edit: Error Message is as follows: unable to connect to database please contact administrator

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  • How to loop a video in Flash

    - by james
    So i had a video that was in quicktime format, threw it into flash, encoded it without a problem and here is the result i got: http://www.healthcarepros.net/travel.html I would like the video to "loop" or "autorewind" as soon as it ends but i am having the hardest time trying to figure how to do this. Here is my code, any help would be greatly appreciated... if (AC_FL_RunContent == 0) { alert("This page requires AC_RunActiveContent.js."); } else { AC_FL_RunContent( 'codebase', 'http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=9,0,0,0', 'width', '330', 'height', '245', 'src', 'healthcare-video', 'quality', 'high', 'pluginspage', 'http://www.macromedia.com/go/getflashplayer', 'align', 'middle', 'play', 'true', 'loop', 'true', 'scale', 'showall', 'wmode', 'window', 'devicefont', 'false', 'id', 'healthcare-video', 'bgcolor', '#ffffff', 'name', 'healthcare-video', 'menu', 'true', 'allowFullScreen', 'false', 'allowScriptAccess','sameDomain', 'movie', 'healthcare-video', 'salign', '' ); //end AC code } <object classid="clsid:d27cdb6e-ae6d-11cf-96b8-444553540000" codebase="http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=9,0,0,0" width="330" height="245" id="healthcare-video" align="middle"> <param name="allowScriptAccess" value="sameDomain" /> <param name="allowFullScreen" value="false" /> <param name="loop" value="true" /> <param name="play" value="true" /> <param name="movie" value="healthcare-video.swf" /><param name="quality" value="high" /><param name="bgcolor" value="#ffffff" /> <embed src="healthcare-video.swf" play="true" flashvars="autoplay=true&play=true&autorewind=true" quality="high" bgcolor="#ffffff" width="330" height="245" name="healthcare-video" align="middle" allowScriptAccess="sameDomain" allowFullScreen="false" type="application/x-shockwave-flash" pluginspage="http://www.macromedia.com/go/getflashplayer" /> </object>

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  • Cakephp - Banner Problem

    - by Joe Elliott
    Hi guys I have a banner rotator on my main page and it was working but it has stopped. All I have done before it stopped was modified some of the db fields. I added to fields position and company and deleted the field 'description.' It was a friend of a friend that made this part of the site for me while i was on holiday so i dont know which files i should show you cos dont know exactly what hes done but im guessing the following ones are the ones you need. banner_view <div id="banner"> <?php if(!empty($banners) && ($banners['Banner']['position']=='Top')){ foreach($banners as $banner){ ?> <a href="<?php echo $banner['Banner']['url']; ?>"><img src="<?php echo $banner['Banner']['path']; ?>" alt="<?php echo $banner['Banner']['company']; ?>" /></a> <?php } } ?> </div> banner_controller <?php class BannersController extends AppController { var $name = 'Banners'; var $helpers = array('Html', 'Form', 'Ajax','Javascript'); var $layout = 'ajax'; var $components = array('Session', 'Cookie'); function beforeFilter() { parent::beforeFilter(); $this->Auth->allow('index','featrot'); if(strpos($this->here, 'admin')) { $this->layout = 'admin'; } } function index() { Configure::write('debug',0); $this->Banner->recursive = 0; $this->paginate['Banner']; $banners = $this->paginate(); if($banners) { $this->set('banners', $banners); } } function featrot() { Configure::write('debug',0); $this->Banner->recursive = 0; $this->paginate['Banner']; $banners = $this->paginate(); if($banners) { $this->set('banners', $banners); } } function admin_edit(){ $this->pageTitle='Admin section - .: Banners Edit:.'; $banners = $this->Banner->find('first'); $id = $banners['Banner']['id']; if (!empty($this->data)) { $this->Banner->id = $id; if ($this->Banner->save($this->data)) { $this->Session->setFlash(__('The Banner has been updated', true)); } else { $this->Session->setFlash(__('The Banner could not update. Please, try again.', true)); } } if (empty($this->data)) { $this->data = $this->Banner->read(null, $id); } } function admin_display_banners($id=null){ $this->pageTitle='Admin section - .: Banners Setting :.'; if (!empty($this->data)) { $this->Banner->id = $id; if ($this->Banner->save($this->data)) { $this->Session->setFlash(__("Banner#$id has been updated", true)); $this->Banner->id = null; } else { $this->Session->setFlash(__("Banner#$id could not update. Please, try again.", true)); } } $this->data = null; $this->Banner->recursive = -1; $this->paginate['Banner']; $banners = $this->paginate('Banner'); $this->set('banners', $banners); } } ?> banner_model <?php class Banner extends AppModel { var $name = 'Banner'; } ?> Hope this is all the details you need. Thanks in advance folks :) Joe :)

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