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  • Combining echo and cat on Unix

    - by Dan
    Really simple question, how do I combine echo and cat in the shell, I'm trying to write the contents of a file into another file with a prepended string? If /tmp/file looks like this: this is a test I want to run this: echo "PREPENDED STRING" cat /tmp/file | sed 's/test/test2/g' > /tmp/result so that /tmp/result looks like this: PREPENDED STRINGthis is a test2 Thanks.

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  • Can anyone tell me why these lines are not working?

    - by user343934
    I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO_init_.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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  • Autoconf -- building with static library (newbie)

    - by EB
    I am trying to migrate my application from manual build to autoconf, which is working very nicely so far. But I have one static library that I can't figure out how to integrate. That library will NOT be located in the usual library locations - the location of the binary (.a file) and header (.h file) will be given as a configure argument. (Notably, even if I move the .a file to /usr/lib or anywhere else I can think of, it still won't work.) It is also not named traditionally (it does not start with "lib" or "l"). Manual compilation is working with these (directory is not predictable - this is just an example): gcc ... -I/home/john/mystuff /home/john/mystuff/helper.a (Uh, I actually don't understand why the .a file is referenced directly, not with -L or anything. Yes, I have a half-baked understanding of building C programs.) So, in my configure.ac, I can use the relevant configure argument to successfully find the header (.h file) using AC_CHECK_HEADER. Inside the AC_CHECK_HEADER I then add the location to CPFLAGS and the #include of the header file in the actual C code picks it up nicely. Given a configure argument that has been put into $location and the name of the needed files are helper.h and helper.a (which are both in the same directory), here is what works so far: AC_CHECK_HEADER([$location/helper.h], [AC_DEFINE([HAVE_HELPER_H], [1], [found helper.h]) CFLAGS="$CFLAGS -I$location"]) Where I run into difficulties is getting the binary (.a file) linked in. No matter what I try, I always get an error about undefined references to the function calls for that library. I'm pretty sure it's a linkage issue, because I can fuss with the C code and make an intentional error in the function calls to that library which produces earlier errors that indicate that the function prototypes have been loaded and used to compile. I tried adding the location that contains the .a file to LDFLAGS and then doing a AC_CHECK_LIB but it is not found. Maybe my syntax is wrong, or maybe I'm missing something more fundamental, which would not be surprising since I'm a newbie and don't really know what I'm doing. Here is what I have tried: AC_CHECK_HEADER([$location/helper.h], [AC_DEFINE([HAVE_HELPER_H], [1], [found helper.h]) CFLAGS="$CFLAGS -I$location"; LDFLAGS="$LDFLAGS -L$location"; AC_CHECK_LIB(helper)]) No dice. AC_CHECK_LIB is looking for -lhelper I guess (or libhelper?) so I'm not sure if that's a problem, so I tried this, too (omit AC_CHECK_LIB and include the .a directly in LDFLAGS), without luck: AC_CHECK_HEADER([$location/helper.h], [AC_DEFINE([HAVE_HELPER_H], [1], [found helper.h]) CFLAGS="$CFLAGS -I$location"; LDFLAGS="$LDFLAGS -L$location/helper.a"]) To emulate the manual compilation, I tried removing the -L but that doesn't help: AC_CHECK_HEADER([$location/helper.h], [AC_DEFINE([HAVE_HELPER_H], [1], [found helper.h]) CFLAGS="$CFLAGS -I$location"; LDFLAGS="$LDFLAGS $location/helper.a"]) I tried other combinations and permutations, but I think I might be missing something more fundamental....

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  • Permits in iPhone apps

    - by zp26
    HI, I want to create i file in the iPhone application. I try it but i have a anomaly. In my pc the file is correctly written. In other pc with the same program the file wasn't exist. In the iPhone device the file not exist. But the strange think thing is that i haven't any error for the app in the all case. Do you have a idea? Thanks so much

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  • UITextView cut problem !

    - by Mc.Lover
    Hi , i have problem with cut some text from UITextView , i idon't understand how can implement Cut , for example copy or paste it's like this : -(IBAction)copy { NSString *copyString = [[NSString alloc] initWithFormat:@"%@",[textPad text]]; UIPasteboard *pb = [UIPasteboard generalPasteboard]; [pb setString:copyString]; } -(IBAction)paste { UIPasteboard *pb = [UIPasteboard generalPasteboard]; textPad.text = [pb string]; } but about cut ! thank you ,

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  • does copyWithZone on an NSArray call copyWithZone on its elements too?

    - by malik
    Hi, here's the scenario, I have this array of Person objects. copyWithZone is implemented on Person and works as expected. I have an array of Person objects, however when I create a copy of the array and modify things in original array (change attributes of a Person) it chances the copy as well. So my best guess is that when I call copyWithZone on NSArray, it does not call it on its elements. Please confirm.

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  • Disable comments in stdout (DOS)

    - by Shadi
    If I use Dos command "copy" to concatenate two files: copy a1.txt + a2.txt a.txt I will have something like the following in stdout: C:\a1.txt C:\a2.txt 1 file(s) copied. I do not want to have anything written in stdout, I mean, I just want to have 'a.txt' without those 3 lines written in stdout. Is there any way to do so? the reason is, I need speed and I know that any IO takes time. Thanks, Shadi.

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  • mercurial for OS projects and svn for Enterprise projects?

    - by ajsie
    correct me if im wrong, but isn't distributed SCMs for OS projects while centralized SCMs are better for corporate/private projects? cause with eg. mercurial anyone gets an exact copy of the repository with FULL history features, while with centralized you only get the latest working copy. im more focused on private projects so i wonder if its better with centralized SCMs or doesnt it matter?

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  • Does EOF actually exist?

    - by terrani
    Hi, When I use file functions in PHP, I check for EOF. I wonder if EOF actually exist in a file. When I create an empty text file, it displays 0KB. How does EOF exist in a file with 0KB?

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  • Merge Function In Entity FrameWork?

    - by Ahmed
    In NHibernate there is a merge function that does the following: if there is a persistent instance with the same identifier currently associated with the session, copy the state of the given object onto the persistent instance if there is no persistent instance currently associated with the session, try to load it from the database, or create a new persistent instance the persistent instance is returned Is this possible in EF? I mean this part : copy the state of the given object onto the persistent instance. And if i used ApplyCurrentValues it seemes to be as update behavior or not?

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  • problem installing mysqldb for python2.6

    - by apoorva
    Hi.. My mysql database is located on a remote machine... So i dont have any local copy of mysql on my local machine.. i get the registry key error... (file not found)... serverKey = _winreg.OpenKey(_winreg.HKEY_LOCAL_MACHINE, options['registry_key']) WindowsError: [Error 2] The system cannot find the file specified I think it requires to have a local copy of mysql... How do i install the mysqldb for database residing on another machine???

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  • Regexs in Ruby getting filename

    - by user1290757
    i am extracting file names of html files using line: filename = File.basename(input_filename, ".*") which currently prints full file name excluding .html extension All files are stored in the form of http^x.x.edu^1^2 all file names begin with http^ and contain edu^ what i want is to extract 2 (which changes) but it is always the second element after .edu I have attempted destructive gsub! but i m weak with regular expressions.

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  • How to prevent mvn jetty:run from executing test phase?

    - by tputkonen
    We use MySQL in production, and Derby for unit tests. Our pom.xml copies Derby version of persistence.xml before tests, and replaces it with the MySQL version in prepare-package phase: <plugin> <artifactId>maven-antrun-plugin</artifactId> <version>1.3</version> <executions> <execution> <id>copy-test-persistence</id> <phase>process-test-resources</phase> <configuration> <tasks> <!--replace the "proper" persistence.xml with the "test" version--> <copy file="${project.build.testOutputDirectory}/META-INF/persistence.xml.test" tofile="${project.build.outputDirectory}/META-INF/persistence.xml" overwrite="true" verbose="true" failonerror="true" /> </tasks> </configuration> <goals> <goal>run</goal> </goals> </execution> <execution> <id>restore-persistence</id> <phase>prepare-package</phase> <configuration> <tasks> <!--restore the "proper" persistence.xml--> <copy file="${project.build.outputDirectory}/META-INF/persistence.xml.production" tofile="${project.build.outputDirectory}/META-INF/persistence.xml" overwrite="true" verbose="true" failonerror="true" /> </tasks> </configuration> <goals> <goal>run</goal> </goals> </execution> </executions> </plugin> The problem is, that if I execute mvn jetty:run it will execute the test persistence.xml file copy task before starting jetty. I want it to be run using the deployment version. How can I fix this?

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  • Which location to save uploaded files

    - by chupinette
    hello! I am using php and i have written codes to allow a user upload a file. For testing purposes, i have saved the file to D:/final/temp/test.xls. Then i generate another file and save it to the same location. This file can be downloaded by the user. But if an actual user would be using my application, where should the location point to? Thanks!

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  • UITextView cut problem ! (iPhone sdk)

    - by Mc.Lover
    Hi , i have problem with cut some text from UITextView , i idon't understand how can implement Cut , for example copy or paste it's like this : -(IBAction)copy { NSString *copyString = [[NSString alloc] initWithFormat:@"%@",[textPad text]]; UIPasteboard *pb = [UIPasteboard generalPasteboard]; [pb setString:copyString]; } -(IBAction)paste { UIPasteboard *pb = [UIPasteboard generalPasteboard]; textPad.text = [pb string]; } but about cut ! thank you ,

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  • Problem editing .fla files

    - by Karthik
    Some times the .fla file opens up showing an output frame. Some times the code is displayed. I want to edit the code and save it as .swf file but it only saves as .swf When the .fla file shows an output frame, it can be saved as .swf How to edit the .fla file? Very frustrating!

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  • SVN branch question

    - by aspdotnetuser
    Hi, When creating a branch, what are the implications of selecting the following? Create copy in the repository from: HEAD revision in the repository Specific revision the repository Working copy

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  • Binding Bitmapimge to Image in Wpf?

    - by Rev
    This is a simple Question (lets see) I want to bind bitmap image to Image. For doing this in cs code u must write this line. this.leftImage.Source = new BitmapImage(new Uri(@"C:\a.bmp")); But I want make Binding from resources. Because In release time resources became part of project.exe file and if you make binding from file(Mean set Image.source with Image file address), you must always put image file in the same address(disaster programing) :)

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  • C# Windows Service Multiple Config Files

    - by Goober
    Quick Question Is it possible to have more than 1 config file in a windows service? Or is there some way I can merge them at run time? Scenario Currently I have two config files containing the below contents. After I build and install my Windows Service, I can't get my custom XML Parser class to read the content because it keeps pointing to the wrong config file, even though I am using a few lines of code to ensure it gets the right name of the config file I need to access. ALSO When I navigate to the folder in which the service is installed, there is only sign of the normal APP.Config file, and no sign of the custom config file. (I have even set the normal ones properties to "Do Not Copy" and the custom ones properties to "Copy Always"). Config File Determination Code string settingsFile = String.Format("{0}.exe.config", System.AppDomain.CurrentDomain.BaseDirectory + Assembly.GetExecutingAssembly().GetName().Name); CUSTOM CONFIG File <?xml version="1.0" encoding="utf-8" ?> <configuration> <servers> <SV066930> <add name="Name" value = "SV066930" /> <processes> <SimonTest1> <add name="ProcessName" value="notepad.exe" /> <add name="CommandLine" value="C:\\WINDOWS\\system32\\notepad.exe C:\\WINDOWS\\Profiles\\TA2TOF1\\Desktop\\SimonTest1.txt" /> </SimonTest1> </processes> </SV066930> </servers> </configuration> NORMAL APP.CONFIG File <?xml version="1.0" encoding="utf-8" ?> <configuration> <configSections> <section name="dataConfiguration" type="Microsoft.Practices.EnterpriseLibrary.Data.Configuration.DatabaseSettings, Microsoft.Practices.EnterpriseLibrary.Data, Version=4.0.0.0, Culture=neutral, PublicKeyToken=xxxxxxxxxxx" /> </configSections> <connectionStrings> <add name="DB" connectionString="Data Source=etc......" /> </connectionStrings> </configuration>

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  • Watching a directory using FileSystemWatcher

    - by rashim
    Hello I'm watching a directory using FileSystemWatcher. When a file is created into that directory - my watcher grabs and transfers it to the network drive. My problem is that when a Microsoft-office file is opened, a temporary file is created in the watched directory. I can't find a way to ignore these files and also could not find when I should move these file to the network drive.

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  • Exporting Sqlite data from an Android Application

    - by meg18019
    My Android application stores all user data in a Sqlite database. What are my options to backup/export/import/copy this data? I know I can easily copy the database to the SD card. I would also like to send the data to a network server. Are there any packages/classes available to facilitate getting sqlite information to/from a network server? Thanks for the help...

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  • Shortening large CSV on debian

    - by Unkwntech
    I have a very large CSV file and I need to write an app that will parse it but using the 6GB file to test against is painful, is there a simple way to extract the first hundred or two lines without having to load the entire file into memory? The file resides on a Debian server.

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  • Create SVN branch from changes in trunk

    - by John
    I'm in a stupid situation: I have done some changes in a working copy of the TRUNK. Since the changes have not been tested, I'd like to transfer all the changes to a branch. According to the manual of Tortoise, Switch will lose all my modifications. Is there any way to keep my changes in the working copy and save them in a branch in the repository.

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  • Copying contents from one NSMutableArray to another

    - by Sheehan Alam
    I have two NSMutableArrays: NSMutableArray* currentMessages NSMutableArray* items I am trying to copy the contents of items into currentMessages as such: [self.currentMessages addObjectsFromArray:self.items]; When I am debugging self.items contains 30 objects. After this operation self.currentMessages contains 0 objects. Why is the copy not working?

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