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• Save result of for loop in a vector

  - by hendrik

  i think I'm just too tired to see the mistake. i wrote a function to get the maximal value for two data sets from a for loop plot_zu <- function(x) {for (i in 1:x){ z=data_raw[grep(a[i], data_raw$Gene.names),] b=data_raw_ace[grep(a[i], data_raw_ace$Gene.names),] p<-vector("numeric", length(1:length(a))) p[i]<-max(z$t_test_diff) return(p)} } so picture: a is a vector of names and the data set (data_raw(_ace)) are filtered by it. In the end i would like to have all maxima values of column t_test_diff in a vector. After that i want to add the t_test_diff column values from data_raw_ace also. So the problem is, that i get this: [1] 1.210213 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 [8] 0.000000 0.000000 So there is a problem with brackets or something but i cannot see it ( first value fits). Sorry for no good example but i think it is understandable and an easy to solve question. If im to dumb to explain my problem right, i will add an example. !! Thx a lot !! grateful Hendrik

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• Relationship DAO, Servlet, JSP and POJO

  - by John Hendrik

  I want to implement a JSP, POJO, DAO and Servlet in my J2EE program. However, I don't fully understand how the relationship between these elements should be. Is the following (MVC) setup the right way to do it? Main class creates servlet(controller) Servlet has a DAO defined in its class DAO has a POJO defined in its class Servlet communicates with the view (JSP page) Please give your feedback.

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• Relationship DAO, Servlet, JSP and POJO [closed]

  - by John Hendrik

  Possible Duplicate: Relationship DAO, Servlet, JSP and POJO I want to implement a JSP, POJO, DAO and Servlet in my J2EE program. However, I don't fully understand how the relationship between these elements should be. Is the following (MVC) setup the right way to do it? Main class creates servlet(controller) Servlet has a DAO defined in its class DAO has a POJO defined in its class Servlet communicates with the view (JSP page) Please give your feedback.

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• NAS + XBMC combination

  - by Hendrik

  I currently own a WD Sharespace and I am not too happy about it. It will freeze constantly and its rather slow. I've been thinking of replacing it. I also own a WD HD Live, and it works like it is supposed to, but recently I've seen XBMC in action and I was quite impressed. I've been wondering lately about the possibility of replacing both products with one new device: a fast reliable nas which I can install XBMC on and is capable of rendering video and has an HDMI out. Do any such devices exist for sale or is the only way to build one from scratch? I've seen HTPC's for sale but I've never seen any of them with a raid setup. I've also read about building your own NAS with freeNAS but those setups dont allow you to run XBMC. Does anyone have experience with this?

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• Tomcat dying silently on regular basis

  - by Hendrik

  My tomcat (6.0.32, Java Sun 1.6.0_22-b04 on Ubuntu 10.04) keeps crashing multiple times daily without any specific output in catalina.out. This usually happens on high load (see top output). Update: The pid-file is properly removed when this happens. Update 2: No CATALINA_OPTS set, _JAVA_OPTS are: export _JAVA_OPTIONS="-Xms128m -Xmx1024m -XX:MaxPermSize=512m \ -XX:MinHeapFreeRatio=20 \ -XX:MaxHeapFreeRatio=40 \ -XX:NewSize=10m \ -XX:MaxNewSize=10m \ -XX:SurvivorRatio=6 \ -XX:TargetSurvivorRatio=80 \ -XX:+CMSClassUnloadingEnabled \ -Djava.awt.headless=true \ -Dcom.sun.management.jmxremote \ -Dcom.sun.management.jmxremote.port=37331 \ -Dcom.sun.management.jmxremote.ssl=false \ -Dcom.sun.management.jmxremote.authenticate=true \ -Djava.rmi.server.hostname=(myhostname) \ -Dcom.sun.management.jmxremote.password.file=/etc/java-6-sun/management/jmxremote.password \ -Dcom.sun.management.jmxremote.access.file=/etc/java-6-sun/management/jmxremote.access" Top: top - 12:40:03 up 9 days, 12:15, 3 users, load average: 30.00, 22.39, 21.91 Tasks: 89 total, 4 running, 85 sleeping, 0 stopped, 0 zombie Cpu(s): 53.2%us, 9.7%sy, 0.0%ni, 34.7%id, 1.5%wa, 0.0%hi, 0.8%si, 0.0%st Mem: 4194304k total, 3311304k used, 883000k free, 0k buffers Swap: 4194304k total, 0k used, 4194304k free, 0k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 25850 tomcat6 20 0 1981m 1.2g 11m S 161 29.6 11:41.56 java 12632 mysql 20 0 393m 97m 4452 S 141 2.4 1690:05 mysqld 14932 nobody 20 0 253m 44m 9152 R 56 1.1 3:26.57 php-cgi 7011 nobody 20 0 241m 31m 9124 S 30 0.8 1:35.96 php-cgi 10093 nobody 20 0 228m 18m 8520 S 25 0.5 2:29.97 php-cgi 27071 nobody 20 0 237m 28m 8640 S 11 0.7 3:13.72 php-cgi 3306 nobody 20 0 227m 16m 6736 R 7 0.4 2:29.83 php-cgi 7756 nobody 20 0 261m 58m 15m R 5 1.4 2:22.33 php-cgi 7129 www-data 20 0 3646m 7228 1896 S 2 0.2 0:36.65 nginx 2657 nobody 20 0 228m 18m 8540 S 1 0.5 1:59.51 php-cgi 7131 www-data 20 0 3645m 6464 1960 S 1 0.2 0:34.13 nginx 7140 www-data 20 0 3652m 12m 1896 S 1 0.3 0:35.80 nginx 619 nobody 20 0 231m 29m 15m S 0 0.7 2:33.46 php-cgi 16552 nobody 20 0 250m 41m 8784 S 0 1.0 2:48.12 php-cgi 17134 nobody 20 0 239m 37m 16m S 0 0.9 2:32.86 php-cgi 21004 nobody 20 0 243m 34m 8700 S 0 0.8 1:19.85 php-cgi 26105 root 20 0 19220 1392 1060 R 0 0.0 0:00.82 top 32430 nobody 20 0 256m 47m 9196 S 0 1.2 2:19.01 php-cgi 314 nobody 20 0 256m 47m 8804 S 0 1.1 1:46.00 php-cgi 2111 nobody 20 0 253m 44m 9196 S 0 1.1 3:01.14 php-cgi 2142 root 20 0 26452 2564 868 S 0 0.1 0:00.56 screen 2144 root 20 0 19484 2012 1368 S 0 0.0 0:00.00 bash 2333 nobody 20 0 249m 41m 9160 S 0 1.0 1:10.33 php-cgi 2552 root 20 0 19484 2260 1620 S 0 0.1 0:00.01 bash 2587 nobody 20 0 258m 49m 9192 S 0 1.2 2:04.50 php-cgi 2684 root 20 0 4092 652 540 S 0 0.0 0:00.00 xvfb-run 2696 root 20 0 60720 13m 2352 S 0 0.3 0:09.12 Xvfb 2759 root 20 0 617m 12m 4676 S 0 0.3 0:00.66 node 3514 nobody 20 0 270m 61m 9216 S 0 1.5 3:13.69 php-cgi 5270 root 20 0 25164 1324 1036 S 0 0.0 0:00.01 screen 5402 nobody 20 0 227m 16m 8032 S 0 0.4 1:33.61 php-cgi 5765 root 20 0 81180 3820 3028 S 0 0.1 0:00.31 sshd 5798 nobody 20 0 242m 32m 9124 S 0 0.8 1:52.08 php-cgi 5856 root 20 0 19496 2292 1636 S 0 0.1 0:00.03 bash 6442 root 20 0 62332 20m 1960 S 0 0.5 0:30.58 mrtg 7082 root 20 0 88992 1916 1636 S 0 0.0 0:00.00 PassengerWatchd I can't find any concrete reason for it, no Exceptions or messages of a shutdown in catalina.out (and no other logs in tomcat's log dir). I can start up the service and it will run for a few days or just minutes before dying again. Is there somewhere else i could look for output? Could the kernel start killing threads due to a lack of ressources and by that bring the VM down?

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• Forward real IP through Haproxy => Nginx => Unicorn

  - by Hendrik

  How do I forward the real visitors ip adress to Unicorn? The current setup is: Haproxy => Nginx => Unicorn How can I forward the real IP address from Haproxy, to Nginx, to Unicorn? Currently it is always only 127.0.0.1 I read that the X headers are going to be depreceated. http://tools.ietf.org/html/rfc6648 - how will this impact us? Haproxy Config: # haproxy config defaults log global mode http option httplog option dontlognull option httpclose retries 3 option redispatch maxconn 2000 contimeout 5000 clitimeout 50000 srvtimeout 50000 # Rails Backend backend deployer-production reqrep ^([^\ ]*)\ /api/(.*) \1\ /\2 balance roundrobin server deployer-production localhost:9000 check Nginx Config: upstream unicorn-production { server unix:/tmp/unicorn.ordify-backend-production.sock fail_timeout=0; } server { listen 9000 default; server_name manager.ordify.localhost; root /home/deployer/apps/ordify-backend-production/current/public; access_log /var/log/nginx/ordify-backend-production_access.log; rewrite_log on; try_files $uri/index.html $uri @unicorn; location @unicorn { proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; proxy_set_header Host $http_host; proxy_set_header X-Real-IP $remote_addr; proxy_redirect off; proxy_pass http://unicorn-production; proxy_connect_timeout 90; proxy_send_timeout 90; proxy_read_timeout 90; } error_page 500 502 503 504 /500.html; client_max_body_size 4G; keepalive_timeout 10; }

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• Same folder history for "save folder" as "change folder"?

  - by Hendrik Vogt

  I use mutt as my e-mail client and have only one major annoyance. If I want to save an e-mail to a folder that I've used before as a "save folder", then I can use the up-arrow to navigate to the folder name. Now if I want to change into that folder, the up-arrow only gives me names of folders I've changed into before. It appears that mutt has two different folder histories for these two purposes. How can I configure mutt so that only one history is used for both purposes? (By the way, I'm pretty sure that older versions of mutt behaved exactly as I wanted, but unfortunately I can't tell the version number.)

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• Java web-app debugging not possible due to direct undeploy on debug

  - by Hendrik

  When i try to debug my webapp it starts up the tomcat server and the application, but shuts down the debugger shortly before the app gets usable. I see the debugging toolbar for a second before it vanishes again, though the app keeps running. Tomcat-log: Listening for transport dt_socket at address: 11555 23.03.2010 01:24:35 org.apache.catalina.core.AprLifecycleListener init INFO: The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: .:/Library/Java/Extensions:/System/Library/Java/Extensions:/usr/lib/java 23.03.2010 01:24:35 org.apache.coyote.http11.Http11Protocol init INFO: Initializing Coyote HTTP/1.1 on http-8084 23.03.2010 01:24:35 org.apache.catalina.startup.Catalina load INFO: Initialization processed in 847 ms 23.03.2010 01:24:35 org.apache.catalina.core.StandardService start INFO: Starting service Catalina 23.03.2010 01:24:35 org.apache.catalina.core.StandardEngine start INFO: Starting Servlet Engine: Apache Tomcat/6.0.20 log4j:WARN No appenders could be found for logger (org.springframework.web.context.ContextLoader). log4j:WARN Please initialize the log4j system properly. 23.03.2010 01:24:41 org.apache.coyote.http11.Http11Protocol start INFO: Starting Coyote HTTP/1.1 on http-8084 23.03.2010 01:24:41 org.apache.jk.common.ChannelSocket init INFO: JK: ajp13 listening on /0.0.0.0:8009 23.03.2010 01:24:41 org.apache.jk.server.JkMain start INFO: Jk running ID=0 time=0/78 config=null 23.03.2010 01:24:41 org.apache.catalina.startup.Catalina start INFO: Server startup in 5855 ms 23.03.2010 01:24:42 org.apache.catalina.startup.HostConfig checkResources INFO: Undeploying context [] 23.03.2010 01:24:45 org.apache.catalina.core.StandardContext start INFO: Container org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/] has already been started Debugging log: Attached JPDA debugger to localhost:11555 Checking data source definitions for missing JDBC drivers... Deploying JDBC driver to /Applications/NetBeans/apache-tomcat-6.0.20/lib/mysql-connector-java-5.1.6-bin.jar Stopping Tomcat process... Waiting for Tomcat... Tomcat server stopped. Starting Tomcat process... Waiting for Tomcat... Tomcat server started. Undeploying ... OK - Undeployed application at context path / In-place deployment at /path/to/project/dir/build/web deploy?config=file%3A%2Fvar%2Ffolders%2FZP%2FZPbqxGrbHFaUlXzAfgWV1%2B%2B%2B%2BTQ%2F-Tmp-%2Fcontext734173871283203218.xml&path=/ OK - Deployed application at context path / start?path=/ Start is in progress... OK - Started application at context path / debug-display-browser: Browsing: http://localhost:8084/ connect-client-debugger: BUILD SUCCESSFUL (total time: 18 seconds) System is Netbeans 6.8 on MacOS 10.6.2. Thank you very much, guys!

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• Failure to register .dll with regsvr32 - only in Release build.

  - by Hendrik

  Hi, I'm having a weird problem when trying to register the .dll i created using regsvr32. During development everything went fine, the debug version registers and works fine. Now i wanted to create a Release version, but that Version does not register anymore. regsvr32 comes up with the following error: The module "mpegsplitter.dll" failed to load. Make sure the binary is stored at the specified path or debug it to check for problems with the binary or dependent .DLL files. The specified procedure could not be found. Some research brought me to the dependency walker, which does tell me this Error: At least one module has an unresolved import due to a missing export function in an implicitly dependent module. It also does show a dependency on "crtdll.dll" that the debug version does not have (The function view shows soem functions that normally should be in ole32.dll), which is colored red'ish. So far so good, i guess its somehow related to what the dependency walker shows there. But where do i go from here? How do i fix it? Any help would be greatly appreciated, that has been keeping me busy for several hours already. Thanks!

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• How can SAP tRFC server tell client through JCo that function has been carried out?

  - by Hendrik Jan van Randen

  SAPs "Transactional RFC Technical Description" document (release 4.0, see http://www.sdn.sap.com/irj/scn/go/portal/prtroot/docs/library/uuid/ee6bca90-0201-0010-5792-d9693e2eac83?QuickLink=index&overridelayout=true ) says in section Transactional RFC on page 6: "Finally, the server tells the client, that the function has been carried out and the client acknowledges this.". How can the server tell this to the client when the server communicates with the client through JCo (Java Connector)?

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• How does a java web project architecture look like without EJB3 ?

  - by Hendrik

  A friend and I are building a fairly complex website based on java. (PHP would have been more obvious but we chose for java because the educational aspect of this project is important to us) We have already decided to use JSF (with richfaces) for the front end and JPA for the backend and so far we have decided not to use EJB3 for the business layer. The reason we've decided not to use EJB3 is because - and please correct me if I am wrong - if we use EJB3 we can only run it on a full blown java application server like jboss and if we don't use EJB3 we can still run it on a lightweight server like tomcat. We want to keep speed and cost of our future web server in mind. So far i've worked on two JEE projects and both used the full stack with web business logic factories/persistence service entities with every layer a seperate module. Now here is my question, if you dont use EJB3 in the business logic layer. What does the layer look like? Please tell what is common practice when developing java web projects without ejb3? Do you think business logic layer can be thrown out altogether and have business logic in the backing beans? If you keep the layer, do you have all business methods static? Or do you initialize each business class as needed in the backing beans in every session as needed?

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• Simple web general localization/translation backend (using mysql)?

  - by Hendrik

  Hi is there a free avaible translation backend with database avaible which can handle multiple users(no login needed), multiple languages (UTF-8) and provides automatic google translation? I just need this tool to fill a database (preferable mysql) with simple tables like this: language | label | text english | _helloworld | Hello World! german | _helloworld | Hallo Welt! I don't care about export since this will have to be created anyways.. Thanks it would be a real timesaver if something with an usable UI exists already.

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• how to bind the same vector multiple times using R?

  - by hendrik

  question: how can i bind the same vector, lets say o=c(1,2,3,4) mutiple times to get a matrix like o=array(c(1,2,3,4,1,2,3,4,1,2,3,4), dim(c(4,3)) o [,1] [,2] [,3] [1,] 1 1 1 [2,] 2 2 2 [3,] 3 3 3 [4,] 4 4 4 in a nicer way then: o=cbind(o,o,o) and maybe more generalized (dublicate()?? I need this to specifiy colors for elements in textplot() thx a lot

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• How to sniff local outgoing network traffic in .NET without using PCap?

  - by SeveQ

  Hi there, I'd like to somehow hook into the local system's network stack to capture outgoing network packets without using Winpcap. Unfortunately it tends to crash my system every now and then. Is there a way to "sniff" outgoing traffic of the local system from a user space process written in a .NET language? Thanks a lot! Hendrik

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• BPMN is dead, long live BPEL!

  - by JuergenKress

  “BPMN is dead, long live BPEL” was the title of our panel discussion during the SOA & BPM Integration Days 2011. At the JAXenter my discussion summery was just published (in German). If you want to learn more about SOA & BPM make sure you register for our up-coming conference October 12th & 13th 2011 in Düsseldorf. The speakers include the top SOA and BPM experts in Germany: Thilo Frotscher & Kornelius Fuhrer & Björn Hardegen & Nicolai Josuttis & Michael Kopp & Dr. Dirk Krafzig & Jürgen Kress & Frank Leymann & Berthold Maier & Hajo Normann & Max J. Pucher & Bernd Rücker & Dr. Gregor Scheithauer & Danilo Schmiedel & Guido Schmutz & Dirk Slama & Heiko Spindler & Volker Stiehl & Bernd Trops & Clemens Utschig-Utschig & Tammo van Lessen & Dr. Hendrik Voigt & Torsten Winterberg  For details please become a member in the SOA Partner Community for registration please visit  www.oracle.com/goto/emea/soa (OPN account required) Blog Twitter LinkedIn Mix Forum Wiki Website

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