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• Can't find netbooted for Kerrighed pxe boot with Ubuntu Lucid Server

  - by Pengin

  I'm following installtion guides for pxe booting and kerrighed. I can't find the package nfsbooted for Ubuntu 10.04. Where did it go? Context: At work I have access to 8 mini-ITX PCs and am trying to build a cluster. My plans include trying Condor, GridGain, Hadoop, and recently Kerrighed has caught my eye. (I reaslise these are all for different kinds of things, I'm just evaluating). Ideally, I'd like to have all the nodes network boot from a single server, since that seems so much easier to manage, plus I can 'borrow' additional PCs for a while without touching their HD. I've been getting on great with Ubuntu Lucid Server (10.04), trying to follow the only guides I can find to get pxe booting (and ultimately kerrighed) to work. This guide is for Ubuntu 8.04 and this one is for Debian. They both refer to a package I can't seem to find, nfsbooted. Has this package been replaced? Am I doing something daft?

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• Are ZFS snapshots + S3 a viable backup system for several VMs and general fileserver storage?

  - by AllanA

  I've been tasked with setting up a backup system for my small office (around 12 people). Most of our production stuff is on the AWS cloud, so what I need to back up are some small office/development files (under 100G right now), plus our operational VMs and development, which round out to a bit under 1T. I just need something reliable, convenient, and straightforward. I'm comfortable with Linux, FreeBSD, and to some extent Solaris 10, so I'm leaning toward a full server rather than an appliance system ala Openfiler or FreeNAS. What I'm contemplating is a small fileserver for general storage and nightly backups of the virtual machines, followed up by an offsite backup to Amazon's S3 storage service. It'd be the usual incremental backups nightly and full backup weekly. My question is if using ZFS snapshots, both locally and dumped to S3 via 'zfs send [-i]', is a viable backup tool? Or should I stick to using Duplicity, or some other method entirely? ZFS snapshots on the internal fileserver/backup machine sound like a perfect way to provide quick and convenient data recovery, so I'm likely to go with that for local redundancy. (If you folks see scenarios where relying on ZFS snapshots would be worse than a more traditional archiving backup, feel free to convince me.) But are snapshots flexible enough to lean on for recovery from the loss of my backup server? Or am I better off with something more traditional? (feel free to recommend free or commercial backup solutions you favor.)

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• Debian Wheezy (testing) df reported volume size

  - by TheRoadrunner

  I am a bit confused about the /dev/sda* references since I installed Wheezy instead of Squeeze on a testing box. fdisk -l returns: Disk /dev/sda: 250.1 GB, 250059350016 bytes 255 heads, 63 sectors/track, 30401 cylinders, total 488397168 sectors Units = sectors of 1 * 512 = 512 bytes Sector size (logical/physical): 512 bytes / 512 bytes I/O size (minimum/optimal): 512 bytes / 512 bytes Disk identifier: 0x000e9623 Device Boot Start End Blocks Id System /dev/sda1 * 2048 480278527 240138240 83 Linux /dev/sda2 480280574 488396799 4058113 5 Extended /dev/sda5 480280576 488396799 4058112 82 Linux swap / Solaris This seems correct. But df -h /dev/sda (and /dev/sda1 and /dev/sda2 and /dev/sda5) returns: Filesystem Size Used Avail Use% Mounted on udev 10M 0 10M 0% /dev The same happens with every entry under /dev/disk/by-id and /dev/disk/by-path. Only one of two entries under /dev/disk/by-uuid returns the correct volume size: df -h /dev/disk/by-uuid/cacdbad6-7e6b-4e80-84ba-e3c77ef48796 Filesystem Size Used Avail Use% Mounted on /dev/disk/by-uuid/cacdbad6-7e6b-4e80-84ba-e3c77ef48796 229G 22G 196G 11% / Contents of /etc/fstab: # /etc/fstab: static file system information. # # Use 'blkid' to print the universally unique identifier for a # device; this may be used with UUID= as a more robust way to name devices # that works even if disks are added and removed. See fstab(5). # # <file system> <mount point> <type> <options> <dump> <pass> # / was on /dev/sda1 during installation UUID=cacdbad6-7e6b-4e80-84ba-e3c77ef48796 / ext4 errors=remount-ro 0 1 # swap was on /dev/sda5 during installation UUID=45840d13-ee36-4e77-8e73-16cbdff25eb1 none swap sw 0 0 /dev/sr0 /media/cdrom0 udf,iso9660 user,noauto 0 0 /dev/fd0 /media/floppy0 auto rw,user,noauto 0 0 It seems all other references than the uuid points to the swap partition. Is this because Wheezy is in testing, and should it be reported as an error?

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• Use old raid drive as boot device without data loss

  - by Gabriel

  There were two disks in sw-raid. There were /dev/md1 as swap, /dev/md2 as boot and a /dev/md3 with ext4. The sw-raid was disabled by stopping and removing mdadm and then zeroing the superblock on each /dev/mdX partition with: sudo mdadm --zero-superblock /dev/sda1 sudo mdadm --zero-superblock /dev/sda2 sudo mdadm --zero-superblock /dev/sda3 In the disk that is the first boot device, I don't know if it's relevant, the system type of each partition was set back from fd to 82 or 83 with fdisk, /etc/fstab was updated, changing /dev/mdX to /dev/sdaX, and grub was reinstalled on the boot partition (/dev/sda2) with grub-instal. But the system wont boot. What else should I do to use this disk as the boot device without reinstall or data loss? Current output of fdisk Device Boot Start End Blocks Id System /dev/sda1 2048 33556480 16777216+ 82 Linux swap / Solaris /dev/sda2 * 33558528 34607104 524288+ 83 Linux /dev/sda3 34609152 3907027120 1936208984+ 83 Linux With it doesn't boot I mean that it stops in the grub console (with the grub> symbol). A ls command says: (hd0) (hd0,msdos3) (hd0,msdos2) (hd0,msdos1) (hd1) (hd1,msdos1) It's weird because hd1 was formatted with ext4...

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• Unable to resize ec2 ebs root volume

  - by nathanjosiah

  I have followed many of the tutorials that pretty much all say the same thing which is basically: Stop the instance Detach the volume Create a snapshot of the volume Create a bigger volume from the snapshot Attach the new volume to the instance Start the instance back up Run resize2fs /dev/xxx However, step 7 is where the problems start happening. In any case running resize2fs always tells me that it is already xxxxx blocks big and does nothing, even with -f passed. So I start to continue with tutorials which all basically say the same thing and that is: Delete all partitons Recreate them back to what they were except with the bigger sizes Reboot the instance and run resize2fs (I have tried these steps both from the live instance and by attaching the volume to another instance and running the commands there) The main problem is that the instance won't start back up again and the system error log provided in the AWS console doesn't provide any errors. (it does however stop at the grub bootloader which to me indicates that it doesn't like the partitions(yes, the boot flag was toggled on the partition with no affect)) The other thing that happens regardless of what changes I make to the partitions is that the instance that the volume is attached to says that the partition has an invalid magic number and the super-block is corrupt. However, if I make no changes and reattach the volume, the instance runs without a problem. Can anybody shed some light on what I could be doing wrong? Edit On my new volume of 20GB with the 6GB image,df -h says: Filesystem Size Used Avail Use% Mounted on /dev/xvde1 5.8G 877M 4.7G 16% / tmpfs 836M 0 836M 0% /dev/shm And fdisk -l /dev/xvde says: Disk /dev/xvde: 21.5 GB, 21474836480 bytes 255 heads, 63 sectors/track, 2610 cylinders Units = cylinders of 16065 * 512 = 8225280 bytes Sector size (logical/physical): 512 bytes / 512 bytes I/O size (minimum/optimal): 512 bytes / 512 bytes Disk identifier: 0x7d833f39 Device Boot Start End Blocks Id System /dev/xvde1 1 766 6144000 83 Linux Partition 1 does not end on cylinder boundary. /dev/xvde2 766 784 146432 82 Linux swap / Solaris Partition 2 does not end on cylinder boundary. Also, sudo resize2fs /dev/xvde1 says: resize2fs 1.41.12 (17-May-2010) The filesystem is already 1536000 blocks long. Nothing to do!

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• MySQL with Java: Open connection only if possible

  - by emempe

  I'm running a database-heavy Java application on a cluster, using Connector/J 5.1.14. Therefore, I have up to 150 concurrent tasks accessing the same MySQL database. I get the following error: Exception in thread "main" com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException: Too many connections This happens because the server can't handle so many connections. I can't change anything on the database server. So my question is: Can I check if a connection is possible BEFORE I actually connect to the database? Something like this (pseudo code): check database for open connection slots if (slot is free) { Connection cn = DriverManager.getConnection(url, username, password); } else { wait ... } Cheers

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• k-means clustering in R on very large, sparse matrix?

  - by movingabout

  Hello, I am trying to do some k-means clustering on a very large matrix. The matrix is approximately 500000 rows x 4000 cols yet very sparse (only a couple of "1" values per row). The whole thing does not fit into memory, so I converted it into a sparse ARFF file. But R obviously can't read the sparse ARFF file format. I also have the data as a plain CSV file. Is there any package available in R for loading such sparse matrices efficiently? I'd then use the regular k-means algorithm from the cluster package to proceed. Many thanks

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• identify documents from results of mahout clustering

  - by Tejas

  I am using mahout to cluster text documents indexed using solr. I have used the "text" field in the document to form vectors. Then I used the k-means driver in mahout for clustering and then the clusterdumper utility to dump the results. I am having difficulty in understanding the output results from the dumper. I could see the clusters formed with term vectors in those clusters. But how do I extract the documents from these clusters. I want the result to be the input documents appearing in different clusters.

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• J2EE/EJB + service locator: is it safe to cache EJB Home lookup result ?

  - by Guillaume

  In a J2EE application, we are using EJB2 in weblogic. To avoid losing time building the initial context and looking up EJB Home interface, I'm considering the Service Locator Pattern. But after a few search on the web I found that event if this pattern is often recommended for the InitialContext caching, there are some negative opinion about the EJB Home caching. Questions: Is it safe to cache EJB Home lookup result ? What will happen if one my cluster node is no more working ? What will happen if I install a new version of the EJB without refreshing the service locator's cache ?

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• FlockDB - What is it? And best cases for it uses.

  - by Guru

  Just came across FlockDB graph database. Details at github /flockDB. Twitter claims it uses FlockDB for the following: Twitter runs FlockDB on a large cluster of machines. we use it to store social graphs (who follows whom, who blocks whom) and secondary indices at twitter. At first glance, setup and trying it doesn't look straight forward. Have anyone already used it / setup this? If so, please answer the following general queries. What kind of applications is it better suited for? (Twitter claims it is simple and very rough, it remains to see what it meant though) How is FlockDB better than other graph db / noSQL db. Have you setup FlockDB, used it for a application? Early advices any? Note: I am evaluating the FlockDB and other graph databases mainly for learning them. Perhaps, I will build an application for that.

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• powershell vs GPO for installation, configuration, maintenance

  - by user52874

  My question is about using powershell scripts to install, configure, update and maintain Windows 7 Pro/Ent workstations in a 2008R2 domain, versus using GPO/ADMX/msi. Here's the situation: Because of a comedy of cumulative corporate bumpfuggery we suddenly found ourselves having to design, configure and deploy a full Windows Server 2008R2 and Windows 7 Pro/Enterprise on very short notice and delivery schedule. Of course, I'm not a windows expert by any means, and we're so understaffed that our buzzword bingo includes 'automate' and 'one-button' and 'it needs to Just Work'. (FWIW, I started with DEC, then on to solaris and cisco, then linux of various flavors with a smattering of BSD nowadays. I use Windows for email and to fill out forms). So we decided to bring in a contractor to do this for us. and they met the deadline. The system is up and mostly usable, and this is good. We would not have been able to do this. But it's the 'mostly' part that is proving to be the PIMA now, and I'm having to learn Microsoft stuff anyway until/if we can get a new contract with these guys for ongoing operations. Here's my question. The contractor used powershell almost exclusively for deployment, configuration and updating. My intensive reading over the last week leads me to think that the generally accepted practices for deployment, configuration and updating microsoft stuff uses elements of GPOs and ADMX templates, along with maybe some third party stuff like PolicyPak. Are there solid reasons that I've not found yet that powershell scripts would be preferred over the GPO methods? I'm going to discuss this with the contractor lead when he gets back from his vacation, and he'll be straight with me (nor do I think they set us up). But I can also see this might be a religious issue, so I would still like some background on this. Thoughts? or weblinks? Thanks!

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• Horizontal Scaling of Tomcat in Microsoft Azure

  - by Fabe

  Hey everyone, I am working on this quiet a while, but still no conclustion. I want to do horizontal scaling of Tomcat instances in Microsoft Azure (1,2,3,... Tomcat instances for one service). I read lots of articles about session replication, clustering,... with Tomcat. Since Azure does not support Multicasts, there is no easy way to cluster Tomcat. Also sticky sessions is no options, because Azure does round robin load balancing. Setting up two services - one with Terracotta or Apache mod_jk - and the other with Tomcat instances seems overkill for me (if even doable)... Is this even possible? Thanks in advance for reading and answering my question. Every comment/idea is highly appreciated.

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• how to optimize sql server table for faster response?

  - by Thomas

  i found a in a table there are 50 thousands records and it takes one minute when we fetch data from sql server table just by issuing a sql. there are one primary key that means a already a cluster index is there. i just do not understand why it takes one minute. beside index what are the ways out there to optimize a table to get the data faster. in this situation what i need to do for faster response. also tell me how we can write always a optimize sql. please tell me all the steps in detail for optimization. thanks.

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• Help regarding no sql databases like hadoop, hbase etc

  - by user560370

  I am new to the distributed NoSQL databases like Hadoop, Cassandra, etc. I have few questions for which I seek an expert advice: Can you list problems/challenges one will generally face when making a shift from the present conventional database like MySQL to these large cluster-based databases? What are the difficulties, if any, when one needs to adapt to a newer version of these open source projects? Can you list out the things which are generally stored/kept in memcached for fast rendering of the page? How can I understand the source code of open-source projects so that I can build on it and maybe give back to the community? Above questions may sound to be idiotic and basic but please it's a request for the experts to answer the above questions in detailed and to best of their abilities.

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• Use C function in C++ program; "multiply-defined" error

  - by eom

  I am trying to use this code for the Porter stemming algorithm in a C++ program I've already written. I followed the instructions near the end of the file for using the code as a separate module. I created a file, stem.c, that ends after the definition and has extern int stem(char * p, int i, int j) ... It worked fine in Xcode but it does not work for me on Unix with gcc 4.1.1--strange because usually I have no problem moving between the two. I get the error ld: fatal: symbol `stem(char*, int, int)' is multiply-defined: (file /var/tmp//ccrWWlnb.o type=FUNC; file /var/tmp//cc6rUXka.o type=FUNC); ld: fatal: File processing errors. No output written to cluster I've looked online and it seems like there are many things I could have wrong, but I'm not sure what combination of a header file, extern "C", etc. would work.

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• kmeans based on mapreduce by python

  - by user3616059

  I am going to write a mapper and reducer for the kmeans algorithm, I think the best course of action to do is putting the distance calculator in mapper and sending to reducer with the cluster id as key and coordinates of row as value. In reducer, updating the centroids would be performed. I am writing this by python. As you know, I have to use Hadoop streaming to transfer data between STDIN and STOUT. according to my knowledge, when we print (key + "\t"+value), it will be sent to reducer. Reducer will receive data and it calculates the new centroids but when we print new centroids, I think it does not send them to mapper to calculate new clusters and it just send it to STDOUT and as you know, kmeans is a iterative program. So, my questions is whether Hadoop streaming suffers of doing iterative programs and we should employ MRJOB for iterative programs?

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• hg clone has stopped working on my Vista box

  - by vkraemer

  I have a Windows Vista machine that has been connecting to http://hg.netbeans.org productively for awhile... until recently. Lately, when I attempt to pull or clone, the update appears to stall... I see the following messages on the screen when I attempt to clone: destination directory: web-main requesting all changes adding changesets And then... nothing happens. I have opened the Task Manager and there doesn't appear to be any significant network activity for HOURS. I can contact the server with FireFox and see the proper output. I can clone from the repo with Solaris and/or Mac OS X... so the issue doesn't appear to be at the 'other end'. I had been running a fairly old version of Mercurial before this started happening. After it started happening, I upgraded to Mercurial 1.5.2.. which did not help resolve the issue at all. What are the likely causes and work-arounds for this?

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• How to make a redundant desktop system with daily snapshots? (Is btrfs ready for use?)

  - by TestUser16418

  I want to configure a desktop system in which the home filesystem would be redundant (e.g. RAID-1), and would have weekly snapshots taken. I've already done this with ZFS, the snapshot system is wonderful, and with send/recv you can easily create backups on external media. Unfortunately, at that point, I want GNU+Linux and not FreeBSD or Solaris, so I'm looking for suggestions for good alternatives. I reckon that my alternatives are: btrfs - it seems to be exactly what I need, it has snapshots and commands that allow you to easily replicate zfs send. Yet all documentation mentions that it's still experimental. I can't seem to find any actual reports on its reliability or usability issues. Can you point me to any information on that issue that could clarify whether it would be a possible choice? I have a large preference for this option, mostly because I don't want to reformat the drives when btrfs becomes ready, but I there's no information on whether it's usable at all, whether it's a silly idea to use it, etc. The question that I cannot get the answer to is what does "experimental" mean. lvm snapshots and ext4 - preferably not, since it can consume an awful amount of space when new files are created. Creating 200 GB files requres 200 GB free space and 200 GB additionally for snapshots. I also have found it unreliable -- failed metadata rewrite results in an unreadable PV. I'm wondering how btrfs would compare here. A single filesystem (ext4) on a RAID-1 array with custom COW snapshots with hardlinks (like cp -al). That's my current preference if I can't use btrfs. So how experimental btrfs is, which should I choose, and do I have any other options? What if I don't keep external incremental backups, would that affect my choice?

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• python parallel computing: split keyspace to give each node a range to work on

  - by MatToufoutu

  My question is rather complicated for me to explain, as i'm not really good at maths, but i'll try to be as clear as possible. I'm trying to code a cluster in python, which will generate words given a charset (i.e. with lowercase: aaaa, aaab, aaac, ..., zzzz) and make various operations on them. I'm searching how to calculate, given the charset and the number of nodes, what range each node should work on (i.e.: node1: aaaa-azzz, node2: baaa-czzz, node3: daaa-ezzz, ...). Is it possible to make an algorithm that could compute this, and if it is, how could i implement this in python? I really don't know how to do that, so any help would be much appreciated

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• Rails: How can I log all requests which take more than 4s to execute?

  - by Fedyashev Nikita

  I have a web app hosted in a cloud environment which can be expanded to multiple web-nodes to serve higher load. What I need to do is to catch this situation when we get more and more HTTP requests (assets are stored remotely). How can I do that? The problem I see from this point of view is that if we have more requests than mongrel cluster can handle then the queue will grow. And in our Rails app we can only count only after mongrel will receive the request from balancer.. Any recommendations?

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• Python - a clean approach to this problem?

  - by Seafoid

  Hi, I am having trouble picking the best data structure for solving a problem. The problem is as below: I have a nested list of identity codes where the sublists are of varying length. li = [['abc', 'ghi', 'lmn'], ['kop'], ['hgi', 'ghy']] I have a file with two entries on each line; an identity code and a number. abc 2.93 ghi 3.87 lmn 5.96 Each sublist represents a cluster. I wish to select the i.d. from each sublist with the highest number associated with it, append that i.d. to a new list and ultimately write it to a new file. What data structure should the file with numbers be read in as? Also, how would you iterate over said data structure to return the i.d. with the highest number that matches the i.d. within a sublist? Thanks, S :-)

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• Detecting touch area on Android

  - by HappyAppDeveloper

  Is it possible to detect every pixel being touched? More specifically, when the user touches the screen, is it possible to track all the x-y coordinates of the cluster of points touched by the user? How can I tell the difference between when users are drawing with their thumb and when they are drawing with the tip of a finger? I would like to reflect the brush difference depending on how users touch the screen, and would also like to track x-y coordinates of all the pixels being touched over time. Thanks so much in advance for any help.

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• DBA's say no to SQL Server DTC?

  - by NabilS

  I am trying to get our DBA's to enable DTC on a cluster of SQL Server 2005. Unfortunately they keep refusing. Their argument that they would need to set up a dedicated host for DTC (Could take months!!) as it is not a matter of ticking a few boxes. Is this true? How intrusive is DTC on a shared environment such as a SQL farm. Do I have an argument against this? Thanks

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• executorservice to read data from database in chuncks and run process on them

  - by TazMan

  I'm trying to write a process that would read data from a database and upload it onto a cloud datastore. How can I decide the partition strategy of the data? I want to query the table in chunks and process each chunk in 10 threads. Each thread basically will send the data to an individual node on a 10 node cluster on the cloud.. Where in the below multi threading code will the dataquery to extract and send 10 concurrent requests for uploading data to cloud would be? public class Caller { public static void main(String[] args) { ExecutorService executor = Executors.newFixedThreadPool(10); for (int i = 0; i < 10; i++) { Runnable worker = new DomainCDCProcessor(i); executor.execute(worker); } executor.shutdown(); while (!executor.isTerminated()) { } System.out.println("Finished all threads"); } }

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• Efficient job progress update in web application

  - by Endru6

  Hi, Creating a web application (Django in my case, but I think the question is more general) that is administrating a cluster of workers doing queued jobs, there is a need to track each jobs progress. When I've done it using database UPDATE (PostgreSQL in this case), it severely hits the database performance, because each UPDATE creates a new row in a table, and in my case only vacuuming DB removes obsolete rows. Having 30 jobs running and reporting progress every 1 minute DB may require vacuuming (and it means huge slow downs on a front end side for all the employees working with the system) every 10 days. Because the progress information isn't critical, ie. it doesn't have to be persistent, how would you do the progress updates from jobs without using an overhead database implies? There are 30 worker servers, each doing 1 or 2 jobs simultaneously, 1 front end server which serves a web application to users, and 1 database server.

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