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  • Perl - string matching issue

    - by user2886545
    I have a problem I cannot understand. I have this string: gene_id "siRNA_Z27kG1_20543"transcript_id "siRNA_Z27kG1_20543_X_1";tss_id "TSS124620" And I want to change the gene_id. So, I have the following code: if ($line =~ /;transcript_id "([A-Za-z0-9:\-._]*)(_[oxOX][_.][0-9]*)";/) { $num = $2; $line =~ s/gene_id "([A-Za-z0-9:\-._]*)";/gene_id "$1$num";/g; print $new $line."\n"; } The aim of my code is to change siRNA_Z27kG1_20543 for siRNA_Z27kG1_20543_X_1. However, my code does not produce that output. Why? I can't understand that. My regex needs to be as it is because I match other strings (this time with success). Thanks.

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  • sloving Algorithm notation

    - by neednewname
    Use big-O notation to classify the traditional grade school algorithms for addition and multiplication. That is, if asked to add two numbers each having N digits, how many individual additions must be performed? If asked to multiply two N-digit numbers, how many individual multiplications are required Suppose f is a function that returns the result of reversing the string of symbols given as its input, and g is a function that returns the concatenation of the two strings given as its input. If x is the string hrwa, what is returned by g(f(x),x)? Explain your answer - don't just provide the result!

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  • Is it possible to get RSA private key knowing public key and set of "original data=>encrypted data"

    - by Riz
    Hi, I work on apllication which allows plugins to access different set of functionality, every plugin provides "initialization string" which sets level of access to different features. Developers send me this strings, and I encrypt them using my 1024 bit RSA private key and send encoded data back. When started, my application decodes encoded data(encoded initialisation string) using built-in public key and if "decoded data != initialization string" it fails to start. So, is it possible to use a database of "initialization string" = "encoded initialization string"(extracted from other plugins) to crack my private key, or make it possible to bruteforce it in reasonable time?

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  • Initial state of autoCreateRowSorter in Swing JTable

    - by Nazgulled
    I have this JTable on my Swing app with the autoCreateRowSorter enabled. My table only has 3 columns, two strings and one int, it works well for all of them when I click the column headers. However, I'm looking for way to do it programatically. I wanted to set the "initial state" for this table. With the Windows look and feel, the column header (when sorted) has a little arrow showing the sort order. But at startup that doesn't show, I have to do one initial click. How can I do that by code?

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  • C# == operator in Immediate window behaves differently than at run-time

    - by Damiano
    Try the following in the Immediate window: object a1 = "a"; object a2 = "a"; a1==a2 // outputs false and you'll see that a1 == a2 outputs false. However, at runtime in either a window app or console, you'll get true: object t1 = "a"; object t2 = "a"; MessageBox.Show((t1 == t2).ToString()); // outputs true The runtime behavior is consistent with the definition for the == operator and strings. Does anybody know if this a bug in the Immediate window?

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  • Linq GroupBy - how to specify the grouping key at runtime?

    - by toasteroven
    is there a good way to do a Linq GroupBy where the grouping key is determined at runtime? e.g. I want the grouping key to be built from a user-selected list of fields - can you do this? I know I can do it easily if I convert everything to a table of strings, but I was wondering if there was an elegant or clever way to accomplish this otherwise. class Item { public int A, B; public DateTime D; public double X, Y, Z; } I have a List<Item> called data. I want to do things like retrieve the sum of X grouped by A, or the sums of X, Y, and Z, grouped by A and B. but what fields go into the grouping should be able to be specified at runtime in some way.

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  • How might you unobtrusively enhance the jQuery Datepicker class?

    - by Teflon Ted
    You can pass special strings into jQuery's Datepicker class setDate() method like "+7" which will be translated into "7 days from today": http://docs.jquery.com/UI/Datepicker#method-setDate But you can't get that "+7" back out. When you call getDate() you get the calculated resulting date. I have a use case where I need to pull out the special string "+7" for propagation. One chunk of code is passing a special string into the Datepicker and passing the Datepicker over to another chunk of code which pulls out the date, but the latter sometimes needs to know the special string rather than the calculated date. So I need to enhance the Datepicker tool to (a) store the special code internally and (b) expose it via a method like getOriginallyPassedInDate() or some such. I'm not a jQuery/Javascript ninja so I could really use some guidance on how I might preferably-unobtrusively add the necessary functionality to the Datepicker class, the way you might monkey-patch an object in Ruby I'm guessing.

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  • How do I modify a string printed by a script?

    - by Liso22
    I'm having problems with wordpress mishandling accented characters, or maybe the problem is with some plugin. Whichever the case I need to "translate" some strings, removing accents which i do with: $value = strtr($value, $trans); I really need to change this string which renders the user's location but it's printed with a script so I have no idea how to do it: <script language="javascript"> document.write('' + geoip_city() +''); </script> Is there a way to assign it's result to a php value beforehand or something? Maybe removing the accents with a script. I really need to modify it, how could I manage to do it? Thanks

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  • How detect length of a numpy array with only one element?

    - by mishaF
    I am reading in a file using numpy.genfromtxt which brings in columns of both strings and numeric values. One thing I need to do is detect the length of the input. This is all fine provided there are more than one value read into each array. But...if there is only one element in the resulting array, the logic fails. I can recreate an example here: import numpy as np a = np.array(2.3) len(a) returns an error saying: TypeError: len() of unsized object however, If a has 2 or more elements, len() behaves as one would expect. import numpy as np a = np.array([2.3,3.6]) len(a) returns 2 My concern here is, if I use some strange exception handling, I can't distinguish between a being empty and a having length = 1.

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  • How do you search through a map?

    - by Jack Null
    I have a map: Map<String, String> ht = new HashMap(); and I would like to know how to search through it and find anything matching a particular string. And if it is a match store it into an arraylist. The map contains strings like this: 1,2,3,4,5,5,5 and the matching string would be 5. So for I have this: String match = "5"; ArrayList<String> result = new ArrayList<String>(); Enumeration num= ht.keys(); while (num.hasMoreElements()) { String number = (String) num.nextElement(); if(number.equals(match)) { result.add(number); } }

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  • How do I create "undo" in c++?

    - by b3y4z1d
    I've got a couple of codes to do some things but I need to create a function that undoes the previous task/addition/change.How do I do this in Borland C++? (the program stores strings of text in a text file using "list",it is stored and then erased unless I use the save-function I've created) right,so I don't know if I've forgotten to mention anything of importance for you to be able to help me better,but if there's something you're wondering about the functions just ask. I meant creating an undo function in a simple consol application by the way.

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  • RegEx - character not before match

    - by danneth
    I understand the consepts of RegEx, but this is more or less the first time I've actually been trying to write some myself. As a part of a project, I'm attempting to parse out strings which match to a certain domain (actually an array of domains, but let's keep it simple). At first I started out with this: url.match('www.example.com') But I noticed I was also getting input like this: http://www.someothersite.com/page?ref=http://www.example.com These rows will ofcourse match for www.example.com but I wish to exclude them. So I was thinking along these lines: Only match rows that contain www.example.com, but not after a ? character. This is what I came up with: var reg = new RegExp("[^\\?]*" + url + "(\\.*)", "gi"); This does however not seem to work, any suggestions would be greatly appreciated as I fear I've used what little knowledge I yet possess in the matter.

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  • python writing a list to a file

    - by gfar90
    I need to write a list to a file in python. I know the list should be converted to a string with the join method, but since I have a tuple I got confused. I tried a lot to change my variables to strings etc, this is one of my first attempts: def perform(text): repository = [("","")] fdist = nltk.FreqDist(some_variable) for c in some_variable: repository.append((c, fdist[c])) return ' '.join(repository) but it gives me the following error: Traceback (most recent call last): File "", line 1, in qe = perform(entfile2) File "", line 14, in perform return ' '.join(repository) TypeError: sequence item 0: expected string, tuple found any ideas how to write the list 'repository' to a file? Thanks!

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  • Unicode string handling using Windows API

    - by DeadMG
    I always assumed that Unicode string handling was some dark art. However, I've seen that the Windows API has functions for comparing Unicode strings, for example. Does that mean that it's actually feasible to write a Unicode string class that can perform simple actions like sorting, equality comparison, and extraction from a file? Or are there hidden gotchas in the use of these functions that makes it actually a really bad idea? I'm just looking at libraries like ICU and they seem incredibly over-complicated compared to what a Unicode string class backed by the Windows API could actually look like, which would resemble the Standard string classes quite closely.

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  • Reading in a file - Warning Message in R

    - by Sheila
    I have a file that has 22268 rows BY 2521 columns. When I try to read in the file using this line of code: file <- read.table(textfile, skip=2, header=TRUE, sep="\t", fill=TRUE, blank.lines.skip=FALSE) I get the following error: Warning message: In scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : number of items read is not a multiple of the number of columns I also used this command to see what rows had an incorrect number of columns: x <-count.fields("train.gct", sep="\t", skip=2) which(x != 2521) and got back a list of about 20 rows that were incorrect. Is there a way to fill these rows with NA values? I thought that is what the "fill" parameter does in the read.table function, but it doesn't appear so. Any help would be greatly appreciated. Thank you.

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  • c# marshaling dynamic-length string

    - by mitsky
    i have a struct with dynamic length [StructLayout(LayoutKind.Sequential, Pack = 1)] struct PktAck { public Int32 code; [MarshalAs(UnmanagedType.LPStr)] public string text; } when i'm converting bytes[] to struct by: GCHandle handle = GCHandle.Alloc(value, GCHandleType.Pinned); stru = (T)Marshal.PtrToStructure(handle.AddrOfPinnedObject(), typeof(T)); handle.Free(); i have a error, because size of struct less than size of bytes[] and "string text" is pointer to string... how can i use dynamic strings? or i can use only this: [MarshalAs(UnmanagedType.ByValTStr, SizeConst = 32)]

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  • How to get size of file in visual c++?

    - by karikari
    Below is my code. My problem is, my destination file always has a lot more strings than the originating file. Then, inside the for loop, instead of using i < sizeof more, I realized that I should use i < sizeof file2 . Now my problem is, how to get the size of file2? int i = 0; FILE *file2 = fopen(LOG_FILE_NAME,"r"); wfstream file3 (myfile, ios_base::out); // char more[1024]; char more[SIZE-OF-file2]; for(i = 0; i < SIZE-OF-file2 ; i++) { fgets(more, SIZE-OF-file2, file2); file3 << more; } fclose(file2); file3.close();

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  • c: memory allocation (what's going on)

    - by facha
    Hi, everyone Please take a look at this piece of code. I'm allocating one byte for the first variable and another byte for the second one. However, it seems like the compiler allocates more (or I'm missing something). The program outputs both strings, even though their length is more the one byte. void main() { char* some1 = malloc(1); sprintf(some1,"cool"); char* some2 = malloc(1); sprintf(some2,"face"); printf("%s ",some1); printf("%s\n",some2); } Please, could anyone spot some light on what's going on when memory is being allocated.

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  • How to call split(token) on a string that does not contain the token without causing an error?

    - by Vorinowsky
    I have two types of strings as the IDs of elements in my HTML markup: Dates: "april-23" "march-20" and season names: "springtime" "winter" The dates have a dash separating the month and the day. The seasons are a single word with no other tokens. I want to assign the month or the season to a new variable called: time_of_year If I do this: var time_of_year = $(this).attr("id").split('-')[0]; It will work on the months but if I call it on a season name which does not contain the token, will it generate an error? What's the safe way to do this?

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  • How to create and Expression tree to do the same as "StartsWith"

    - by Jonathan
    Hi to all. Currently, I have this method to compare two numbers Private Function ETForGreaterThan(ByVal query As IQueryable(Of T), ByVal propertyValue As Object, ByVal propertyInfo As PropertyInfo) As IQueryable(Of T) Dim e As ParameterExpression = Expression.Parameter(GetType(T), "e") Dim m As MemberExpression = Expression.MakeMemberAccess(e, propertyInfo) Dim c As ConstantExpression = Expression.Constant(propertyValue, propertyValue.GetType()) Dim b As BinaryExpression = Expression.GreaterThan(m, c) Dim lambda As Expression(Of Func(Of T, Boolean)) = Expression.Lambda(Of Func(Of T, Boolean))(b, e) Return query.Where(lambda) End Function It works fine and is consumed in this way query = ETForGreaterThan(query, Value, propertyInfo) As you can see, I give it an IQueryable collection and it add a where clause to it, base on a property and a value. Y can construct Lessthan, LessOrEqualThan etc equivalents as Expression has this operators predefined. ¿How can I transform this code to do the same with strings? Expression don't give me a predefined operator like "contains" or "startwith" and I'm really noob with Expression trees. Thanks, and please Post your answer in C#/VB. Choose the one that make you feel more confortable.

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  • convert int into string with certain length of char

    - by Tommy
    If the title wasn't clear, ill try to explain it well here. I have a bunch of integers, ranging from 1 to 999, and i need to convert these into strings, but when i do that, i need them to be 3 characters long. so for instance, if i had: int i1 = 45; then when i turned that into a string, i'd need this: "045" or similarly, if i had an int of 8 then that would have to turn into "008", and if anything had 3 places, such as 143, then it would just be outputted as 143. is this easily possible? Thanks for responses in advance. :)

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  • doubt in Exceptions

    - by Ajay Singh
    class MyException extends Exception { MyException() {} MyException(String msg) { super(msg);} } public class NewException { static void f() throws MyException { System.out.println("throwing exception from f()"); throw new ClassCastException(); } static void g() throws MyException { System.out.println("throwing exception from g()"); throw new MyException("parametrized "); } public static void main(String ...strings ) { try { f(); } catch(MyException e) { e.printStackTrace(System.out); } try { g(); } catch(MyException e) { e.printStackTrace(System.out); } } } In the function f() iam specifying that "MyException " exception will be thrown and actually iam throwing some other exception which has no relation with MyException but still the compiler does not report any complain.Why is it so??

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  • Is it possible to add two nodes at a time dynamically to a treeview

    - by Dorababu
    I am having a tree-view on my main form with initially some nodes as follows ACH |-> some.txt |->FileHeader |->BatchHeader Now at this point i will have to add 2 child nodes at a time to BatchHeader. This nodes i will pass as strings from child forms My sample code that i added some nodes is as follows public void loadingDatafrom(string filename, bool str) { if (Append.oldbatchcontrol != filename) { if (tvwACH.SelectedNode.Text == "FileHeader") { tvwACH.SelectedNode.Nodes.Add(filename); } if (tvwACH.SelectedNode.Text == "BatchHeader" && filecontrolvariables.m_gridclick == false) { tvwACH.SelectedNode.Nodes.Add(filename); **I got this idea tvwach.SelectedNode.Lastnode.Nodes.Add("Node");** } } } Can any one give an idea to add 2 nodes as child to the existing node ..

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  • jQuery version of YAHOO.lang (isUndefined, isNull, isString etc.)

    - by Chris S
    Does anyone know of a jQuery plugin that has 'helpers' or extensions like those found in the YAHOO.lang namespace? I have in mind functions such as: isNull isDefined isString isFunction I would also appreciate the same kind of thing for strings and arrays, such as Contains, StartsWith (I know these are easy to write, I'm just looking for a plugin that encompasses them all). It's not in the YAHOO.lang namespace but also form related extensions- determining a radiobox's value (from the one checked), a form element's type in a friendly name. Specifically a plugin with fluent API rather than selector based such as $("input[@type=radio][@checked]") Again I'm aware they're easy to implement but I don't want to reinvent the wheel.

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  • Declaring a data type dynamically in C++

    - by Bobby
    I want to be able to do the following: I have an array of strings that contain data types: string DataTypeValues[20] = {"char", "unsigned char", "short", "int"}; Then later, I would like to create a variable of one of the data types at runtime. I won't know at compile time what the correct data type should be. So for example, if at runtime I determined a variable x needed to be of type int: DataTypeValues[3] x = 100; Obviously this won't work, so how could I do something like this?

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