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  • File management

    - by user343934
    I am working on python and biopython right now. I have a file upload form and whatever file is uploaded suppose(abc.fasta) then i want to pass same name in execute (abc.fasta) function parameter and display function parameter (abc.aln). Right now i am changing file name manually, but i want to have it automatically. Workflow goes like this. ----If submit is not true then display only header and form part --- if submit is true then call execute() and get file name from form input --- Then display the save file result in the same page. File name is same as input. My raw code is here -- http://pastebin.com/FPUgZSSe Any suggestions, changes and algorithm is appreciated Thanks

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  • what are the vulnerabilities installing openvpn client on a customer's unattended server?

    - by senorsmile
    We run Pfsense as our primary firewall. We also have OpenVPN server running on that box to allow us to remotely connect to our network. My question is: if we have a customer's mostly unattended server that we want to access remotely, what security vulnerabilities are there to installing openvpn on the customer's server as a client connecting to our network. Presumably, we would want to limit/restrict that server's access to the rest of our network. How do we lock openvpn down and are there ways to detect abnormal activity coming from an openvpn client?

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  • How do I get a remote tracking branch to stay up to date with remote origin in a bare Git repository?

    - by Beau Simensen
    I am trying to maintain a bare copy of a Git repository and having some issues keeping the remote tracking branches up to date. I create the remote tracking branches like this: git branch -t 0.1 origin/0.1 This seems to do what I need to do for that point in time. However, if I make changes to origin and then fetch with the bare repo, things start to fall apart. My workflow looks like this: git fetch origin It looks like all of the commits come in at that point, but my local copy of 0.1 is not being updated. I can see that the changes have been brought into the repository by doing the following: git diff 0.1 refs/remotes/origin/0.1 What do I need to do to get my tracking branch updated with the remote's updates? I feel like I must be missing a step or a flag somewhere.

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  • How do you learn a class hierarchy quickly?

    - by rsteckly
    Hi, Something I don't enjoy about programming is learning a new API. For example, right now I'm trying to learn Windows Identity Foundation. Its frustrating because I'm going to spend the bulk of the time learning how a few classes work and actually only write several lines of code. In .NET, there are so many types that I seem to spend more time hunting around in msdn for a class than writing code. It also interrupts my workflow while I'm working because I have to type a little bit than look something up. Obviously, I don't have to do this for the basic classes. Whenever new things come though there is definitely some looking up to do. Then I often don't reuse that class enough to really review it or bring it into action. I'm wondering if anybody out there has a found a way to memorize (or look up more efficiently) these object model hierarchies?

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  • Can't see progress of rolling back SPID with KILL WITH STATUSONLY

    - by BradC
    I have a SPID on SQL 2005 that shows in Activity Monitor as "ROLLBACK" mode (because a transaction log filled up, not because it was manually killed). I tried to see how much time it has left to roll back with a KILL 115 WITH STATUSONLY but it just said "Status report cannot be obtained. Rollback operation for Process ID 115 is not in progress." Can I safely issue a "KILL 115" so that I can see the rollback status? Does this actually do anything on a spid currently in rollback?

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  • High frequency, kernel bypass vs tuning kernels?

    - by Keith
    I often hear tales about High Frequency shops using network cards which do kernel bypass. However, I also often hear about them using operating systems where they "tune" the kernel. If they are bypassing the kernel, do they need to tune the kernel? Is it a case of they do both because whilst the network packets will bypass the kernel due to the card, there is still all the other stuff going on which tuning the kernel would help? So in other words, they use both approaches, one is just to speed up network activity and the other makes the OS generally more responsive/faster? I ask because a friend of mine who works within this industry once said they don't really bother with kernel tuning anymore-because they use kernel bypass network cards? This didn't make too much sense as I thought you would always want a faster kernel for all the CPU-offloaded calculations.

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  • List and kill running processes on Mac OS in Ctrl/Alt/Delete-like way?

    - by AP257
    So, what do you do on a Mac when a process (as opposed to an application) is hogging CPU, swamping your machine, and you need to kill it? I know you can use top or open Applications > Utilities > Activity Monitor and kill it from there. But what happens when the process is already using so much CPU that doing either of those tasks is impossible? On Windows, you can just do Ctrl/Alt/Delete and the process list will reliably open. So no matter how much your computer is thrashing, you always have access to the list of processes. On Mac OS, there's Cmd/Alt/Escape, which reliably shows running applications. Fine when it's an application causing the problem. But: what do you do if it's a process?

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  • Installer hangs on "waiting for other installations to finish" despite no other installations in progress

    - by clozach
    I started an installation of the Xcode 4 developer's preview last night before going to bed. When I woke up, the installation had popped up a message saying to close Xcode first (doh!). I did so, but whatever script had displayed the message seemed to have hung because the (uncancellable) message wouldn't disappear, and the installer wouldn't progress. After force quitting the Installer app, the message above was still showing, so I restarted my MacBook Pro and then tried the installation again. This time it wouldn't even start, instead showing one of those candy-stripe activity bars and the message: Waiting for other installations to finish At this point, I'm stumped. There are no other installations in progress, so there must be some artifact left over from the interrupted install that's gumming up the works. But what?

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  • Samba / smbd on Centos 6.5

    - by Satalink
    I've installed Samba4 and have the smb.conf file as follows: [global] workgroup = WORKGROUP server string = Samba Server realm = REXIALO.COM netbios name = REXIALO.COM security = user map to guest = Bad Password bind interfaces only = no interfaces = lo venet0 log file = /var/log/samba/samba.log max log size = 1000 [webroot] path = /usr/local/apache/htdocs comment = Example.com webroot directory read only = No I can connect from the same server with smbclient. Localhost: # smbclient -L localhost -U root Domain=[WORKGROUP] OS=[Unix] Server=[Samba 4.1.11] Sharename Type Comment --------- ---- ------- webroot Disk RexiAlo webroot directory IPC$ IPC IPC Service (RexiAlo Samba Server) Domain=[WORKGROUP] OS=[Unix] Server=[Samba 4.1.11] Server Comment --------- ------- Workgroup Master --------- -------Enter root's password: network: # smbclient -L rexialo.com -U Domain=[WORKGROUP] OS=[Unix] Server=[Samba 4.1.11] Sharename Type Comment --------- ---- ------- webroot Disk RexiAlo webroot directory IPC$ IPC IPC Service (RexiAlo Samba Server) Domain=[WORKGROUP] OS=[Unix] Server=[Samba 4.1.11] Server Comment --------- ------- Workgroup Master --------- ------- The problem is when I try to map to the smb webroot from Windows 7, it asks for user/pass but just times out and then prompts for credentials. The samba.log file does not show any activity other than the startup of the smbd process. Any help would be appreciated.

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  • how to deploy web application directly from git master branch

    - by mobile.linkr
    For educational purpose, I am writing a server instance in GCE(google compute engine) to serve a few web apps mostly (to be) written in Dart and Polymer. My workflow is, when my students log-in the server above, they will automatically fork those web apps into their own registries in their own server instances for further development. My issues are, How to serve web applications(they are git registries as well) in GCE like Github Pages? Is it possible to manipulate Github Pages to serve web apps mostly using Dart and Polymer packages? Thanks in advance.

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  • Keeping a web request alive.

    - by The Machine
    I have a web application , that helps download reports. But the report generation sometimes takes a lot of time, and the web request times out through the intermediate proxy server.(Timeout :90 secs). The workflow for downloading the report is straightforward. Client sends request to the web server. The web server generates the report , and makes it available to the client as an excel download. The excel is generated using POI and the download is provided using Spring's AbstractExcelView. What could be the best way to keep the web request alive(without increasing the timeout , of course) ?

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  • TextMate/Macfusion combo for mounting projects over SSH

    - by Sam Lee
    Here is my workflow: I use Macfusion to mount a server over SSH, and then edit the root directory of the project in TextMate (using mate /Volumes/server/projectdir). I have a plug in installed that disables refreshing on refresh. This works ALMOST perfectly--the only thing I have problems with is "Find in Project": it's REALLY slow. Has anyone run into this problem before and been able to find any solutions? Currently I go to terminal when I have to do a search, but it would be great to be able to do it in TextMate. Thanks!

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  • How to use git feature branches with live updates and merge back to master?

    - by karlthorwald
    I have a production website where master is checked out and a development webiste where I develop in feature branches. When a feature is merged into master I do this on the development site: (currently on the new-feature branch) $ git commit -m"new feature finished" $ git push $ git checkout master $ git merge new-feature $ git push And on the production site: (currently on master branch) $git pull This works for me. But sometimes the client calls and needs a small change on the website quickly. I can do this on production on master and push master and this works fine. But when I use a feature branch for the small change I get a gap: (On production on branch master) $ git branch quick-feature $ git checkout quick-feature $ git push origin quick-feature $ edit files... $ git add . $ git commit -m"quick changes" $ git push # until this point the changes are live $ git checkout master #now the changes are not live anymore GAP $ git merge quick-feature # now the changes are live again $ git push I hope I could make clear the intention of this workflow. Can you recommend something better?

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  • Aspect Oriented Programming vs List<IAction> To execute methods based on conditions

    - by David Robbins
    I'm new to AOP so bear with me. Consider the following scenario: A state machine is used in a workflow engine, and after the state of the application is changed, a series of commands are executed. Depending on the state, different types of commands should be executed. As I see it, one implementation is to create List<IAction> and have each individual action determine whether it should execute. Would a Aspect Oriented process work as well? That is, could you create an aspect that notifies a class when a property changes, and execute the appropriate processes from that class? Would this help centralize the state specific rules?

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  • Capture the active window to jpg using C# ?

    - by user29004
    Hello, I am creating a Windows Application that capture the all users session details. I want to track that how many users are connected with my machine using RDP session. Want to log all their activity with screen shot. So I would like to know how can I capture the active screen. I tried 'RUNAS' but its show me current screen shot where I run. I am able to use user's application data but not get Actual screen. I also tried LogonUser, CreateProcessAsUser but not getting actual point. So please let me know how can I do it ? I used 'cassia' google library to list all the current logged user. Thanks Laxmilal

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  • Create and Share a File (Also a mysterious error)

    - by Kirk
    My goal is to create a XML file and then send it through the share Intent. I'm able to create a XML file using this code FileOutputStream outputStream = context.openFileOutput(fileName, Context.MODE_WORLD_READABLE); PrintStream printStream = new PrintStream(outputStream); String xml = this.writeXml(); // get XML here printStream.println(xml); printStream.close(); I'm stuck trying to retrieve a Uri to the output file in order to share it. I first tried to access the file by converting the file to a Uri File outFile = context.getFileStreamPath(fileName); return Uri.fromFile(outFile); This returns file:///data/data/com.my.package/files/myfile.xml but I cannot appear to attach this to an email, upload, etc. If I manually check the file length, it's proper and shows there is a reasonable file size. Next I created a content provider and tried to reference the file and it isn't a valid handle to the file. The ContentProvider doesn't ever seem to be called a any point. Uri uri = Uri.parse("content://" + CachedFileProvider.AUTHORITY + "/" + fileName); return uri; This returns content://com.my.package.provider/myfile.xml but I check the file and it's zero length. How do I access files properly? Do I need to create the file with the content provider? If so, how? Update Here is the code I'm using to share. If I select Gmail, it does show as an attachment but when I send it gives an error Couldn't show attachment and the email that arrives has no attachment. public void onClick(View view) { Log.d(TAG, "onClick " + view.getId()); switch (view.getId()) { case R.id.share_cancel: setResult(RESULT_CANCELED, getIntent()); finish(); break; case R.id.share_share: MyXml xml = new MyXml(); Uri uri; try { uri = xml.writeXmlToFile(getApplicationContext(), "myfile.xml"); //uri is "file:///data/data/com.my.package/files/myfile.xml" Log.d(TAG, "Share URI: " + uri.toString() + " path: " + uri.getPath()); File f = new File(uri.getPath()); Log.d(TAG, "File length: " + f.length()); // shows a valid file size Intent shareIntent = new Intent(); shareIntent.setAction(Intent.ACTION_SEND); shareIntent.putExtra(Intent.EXTRA_STREAM, uri); shareIntent.setType("text/plain"); startActivity(Intent.createChooser(shareIntent, "Share")); } catch (FileNotFoundException e) { e.printStackTrace(); } break; } } I noticed that there is an Exception thrown here from inside createChooser(...), but I can't figure out why it's thrown. E/ActivityThread(572): Activity com.android.internal.app.ChooserActivity has leaked IntentReceiver com.android.internal.app.ResolverActivity$1@4148d658 that was originally registered here. Are you missing a call to unregisterReceiver()? I've researched this error and can't find anything obvious. Both of these links suggest that I need to unregister a receiver. Chooser Activity Leak - Android Why does Intent.createChooser() need a BroadcastReceiver and how to implement? I have a receiver setup, but it's for an AlarmManager that is set elsewhere and doesn't require the app to register / unregister. Code for openFile(...) In case it's needed, here is the content provider I've created. public ParcelFileDescriptor openFile(Uri uri, String mode) throws FileNotFoundException { String fileLocation = getContext().getCacheDir() + "/" + uri.getLastPathSegment(); ParcelFileDescriptor pfd = ParcelFileDescriptor.open(new File(fileLocation), ParcelFileDescriptor.MODE_READ_ONLY); return pfd; }

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  • Snow Leopard Hangs at Login Window

    - by jessecurry
    I've had an issue for the past few months, but I rarely restart so it hasn't caused too much trouble. Basically, when I start up my Mac (iMac10,1 - 3.06GHz Intel Core 2 Duo, OS X 10.6.3) everything proceeds as usual until I reach the login window. The login window displays normally, but keyboard and mouse input seem to be ignored. This condition persists for around 5 minutes at which time everything goes back to normal. While the login window is frozen my second monitor appears entirely blue, the second monitor receives a background as soon as the login window becomes responsive. If I startup while holding SHIFT the problem still occurs, but the freeze is much shorter. Looking through my logs I see no activity during the time that the login window is frozen. I've attempted to repair disk permissions, and gone through every possible maintenance option in Cocktail.

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  • refresh windows network performance counters in command line

    - by michalv82
    I am testing a USB device connected to a windows PC. When the device is connected then windows has another network interface going through the device. I need to get the bytes transffered for that specific interface, basically I need the data shown in the networking tab in the task manager for my interface adapter. I found this question which helped to get this info: ms windows network activity bytes send and receive in command line However I have a problem when I run multiple tests - each time I disconnect and connect the device there's another line for the interface, like below. In the task manager networking tab I only see one record for my interface but I don't know how I can know from command line which is the lastest and current instance (it's not like the first line or last line is always the current interface, I noticed it's not consistent): wmic path Win32_PerfRawData_Tcpip_NetworkInterface Get Name,PacketsReceivedPerSec,PacketsSentPerSec,BytesReceivedPersec,BytesSentPersec BytesReceivedPersec BytesSentPersec Name PacketsReceivedPersec PacketsSentPersec 422666370 6317989292 Intel[R] 82579LM Gigabit Network Connection 2715169 8109643 49150 375973 My USB Device 432 568 0 0 My USB Device _2 0 0 0 0 My USB Device _3 0 0 0 0 My USB Device _6 0 0 0 0 Local Area Connection* 9 0 0

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  • SVN Feature Branch Method

    - by Seth
    I am getting a SVN server setup and will be using the feature branch method. I plan on having 1+ branches making up a release tag. How do I merge (?) multiple branches into the release tag, while still maintaining diffs and such? I've given an example of our workflow below. Multiple devs pull to local Create feature branch Commit to branch Use branch to build QA (Here is where my question starts) I need to have all the branches for the next build to be put into a build tag to be used to build Production

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  • Computer only booting after POWER ON/OFF 10 times or more?

    - by Jan Gressmann
    Hi fellow geeks, recently my computer started to behave like an old car and won't start up anymore unless I flip the power switch repeatedly. What happens when I power it on: CPU fans spins briefly and very slowly, then it stops Same with GPU fan No BIOS beeps or HDD activity Screen stays black After turning it on and off for like 10 times, it'll eventually boot like normal and run smooth without any problems what-so-ever. But I'm worried it might eventually die completely. Anyone know the most common cause of this? Maybe I should just leave the computer powered on? :)

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  • sherlock actionbar menu

    - by user1647443
    I am trying to setup a menu programatically and my method gets com.actionbarsherlock.view.Menu menu as a parameter. As I want to change the styling of the menu item I am trying to setup a SpannableString spannable and pass it to add. menu.add(0, MENU_ABOUT, 0, spannable); This is causing a crash only in ICS when I cick that menu item. Any ideas if I am missing something. Thanks Here is the code I am trying and it crashes when I run the app and select "About Application". FYI, I am using SpannableString because I want to add some styling and color to the menu item. The crash does NOT happen if I use a regular string, but then I cant do styling public boolean onCreateOptionsMenu(com.actionbarsherlock.view.Menu menu) { SpannableString spannable = new SpannableString("About Application"); menu.add(0, MENU_ABOUT, 0, spannable); return true; } Here is the stack trace: 09-05 02:25:32.849: E/AndroidRuntime(684): FATAL EXCEPTION: main 09-05 02:25:32.849: E/AndroidRuntime(684): java.lang.IllegalArgumentException: Invalid payload item type 09-05 02:25:32.849: E/AndroidRuntime(684): at android.util.EventLog.writeEvent(Native Method) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.app.Activity.onMenuItemSelected(Activity.java:2501) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.support.v4.app.FragmentActivity.onMenuItemSelected(FragmentActivity.java:351) 09-05 02:25:32.849: E/AndroidRuntime(684): at com.android.internal.policy.impl.PhoneWindow.onMenuItemSelected(PhoneWindow.java:950) 09-05 02:25:32.849: E/AndroidRuntime(684): at com.android.internal.view.menu.MenuBuilder.dispatchMenuItemSelected(MenuBuilder.java:735) 09-05 02:25:32.849: E/AndroidRuntime(684): at com.android.internal.view.menu.MenuItemImpl.invoke(MenuItemImpl.java:149) 09-05 02:25:32.849: E/AndroidRuntime(684): at com.android.internal.view.menu.MenuBuilder.performItemAction(MenuBuilder.java:874) 09-05 02:25:32.849: E/AndroidRuntime(684): at com.android.internal.view.menu.ListMenuPresenter.onItemClick(ListMenuPresenter.java:163) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.widget.AdapterView.performItemClick(AdapterView.java:292) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.widget.AbsListView.performItemClick(AbsListView.java:1058) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.widget.AbsListView$PerformClick.run(AbsListView.java:2514) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.widget.AbsListView.onTouchEvent(AbsListView.java:3180) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.view.View.dispatchTouchEvent(View.java:5541) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.view.ViewGroup.dispatchTransformedTouchEvent(ViewGroup.java:1951) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.view.ViewGroup.dispatchTouchEvent(ViewGroup.java:1712) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.view.ViewGroup.dispatchTransformedTouchEvent(ViewGroup.java:1957) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.view.ViewGroup.dispatchTouchEvent(ViewGroup.java:1726) 09-05 02:25:32.849: E/AndroidRuntime(684): at com.android.internal.policy.impl.PhoneWindow$DecorView.dispatchTouchEvent(PhoneWindow.java:1860) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.view.View.dispatchPointerEvent(View.java:5721) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.view.ViewRootImpl.deliverPointerEvent(ViewRootImpl.java:2890) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.view.ViewRootImpl.handleMessage(ViewRootImpl.java:2466) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.view.ViewRootImpl.processInputEvents(ViewRootImpl.java:845) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.view.ViewRootImpl.handleMessage(ViewRootImpl.java:2475) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.os.Handler.dispatchMessage(Handler.java:99) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.os.Looper.loop(Looper.java:137) 09-05 02:25:32.849: E/AndroidRuntime(684): at android.app.ActivityThread.main(ActivityThread.java:4424) 09-05 02:25:32.849: E/AndroidRuntime(684): at java.lang.reflect.Method.invokeNative(Native Method) 09-05 02:25:32.849: E/AndroidRuntime(684): at java.lang.reflect.Method.invoke(Method.java:511) 09-05 02:25:32.849: E/AndroidRuntime(684): at com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(ZygoteInit.java:784) 09-05 02:25:32.849: E/AndroidRuntime(684): at com.android.internal.os.ZygoteInit.main(ZygoteInit.java:551) 09-05 02:25:32.849: E/AndroidRuntime(684): at dalvik.system.NativeStart.main(Native Method) Thanks

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  • Agile version control?

    - by Paul Dixon
    I'm trying to work out a good method to manage code changes on a large project with multiple teams. We use subversion at the moment, but I want more flexibility in building a new release than I seem to be able to get with subversion. Here's roughly I want: for each developer to create easily identifiable patches for the project. Each patch delivers a complete user story (a releasable feature or fix). It might encompass many changes to many files. developers are able to easily apply and remove their own and other patches to facilitate testing release manager selects the patches to be used in the next release into a new branch branch is tested, fixes merged in, and ultimately merged into live teams can then pull these changes back down into their sandboxes. I'm looking at stacked git as a way of achieving this, but what other tools or techniques can deliver this sort of workflow?

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  • saving file name from html form input

    - by user343934
    I am working on python and biopython right now. I have a file upload form and whatever file is uploaded suppose(abc.fasta) then i want to pass same name in execute (abc.fasta) function parameter and display function parameter (abc.aln). Workflow goes like this. ----If submit is not true then display only header and form part --- if submit is true then call execute() and get file name from form input --- Then display the save file result in the same page. File name is same as input. My raw code is here -- http://pastebin.com/FPUgZSSe Any suggestions, changes and algorithm is appreciated Thanks

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  • How do I log file system read/writes by filename in Linux?

    - by Casey
    I'm looking for a simple method that will log file system operations. It should display the name of the file being accessed or modified. I'm familiar with powertop, and it appears this works to an extent, in so much that it show the user files that were written to. Is there any other utilities that support this feature. Some of my findings: powertop: best for write access logging, but more focused on CPU activity iotop: shows real time disk access by process, but not file name lsof: shows the open files per process, but not real time file access iostat: shows the real time I/O performance of disk/arrays but does not indicate file or process

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  • Can I Use ASP.NET Wizard Control to Insert Data into Multiple Tables?

    - by SidC
    Hello All, I have an ASP.NET 3.5 webforms project written in VB that involves a multi-table SQL Server insert. That is, I want the customer to input all their contact information, order details etc. into one control (thinking wizard control). Then, I want to call a stored procedure that does the insert into the respective database tables. I'm familiar and comfortable with the ASP.NET wizard control. However, all the examples I've seen in my searches pertain to inserting data into one table. Questions: 1. Given a typical order process - customer information, order information, order details - should a wizard control be used to insert data into multiple database tables? If not, what controls/workflow do you suggest? 2. I've set primary keys and indexes on my order details, orders and customers tables. Is there special stored procedure syntax to use to ensure that referential integrity is maintained through the insert process? Thanks, Sid

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