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• Writing fortran robust and "modern" code

  - by Blklight

  In some scientific environments, you often cannot go without FORTRAN as most of the developers only know that idiom, and there is lot of legacy code and related experience. And frankly, there are not many other cross-platform options for high performance programming ( C++ would do the task, but the syntax, zero-starting arrays, and pointers are too much for most engineers ;-) ). I'm a C++ guy but I'm stuck with some F90 projects. So, let's assume a new project must use FORTRAN (F90), but I want to build the most modern software architecture out of it. while being compatible with most "recent" compilers (intel ifort, but also including sun/HP/IBM own compilers) So I'm thinking of imposing: global variable forbidden, no gotos, no jump labels, "implicit none", etc. "object-oriented programming" (modules with datatypes + related subroutines) modular/reusable functions, well documented, reusable libraries assertions/preconditions/invariants (implemented using preprocessor statements) unit tests for all (most) subroutines and "objects" an intense "debug mode" (#ifdef DEBUG) with more checks and all possible Intel compiler checks possible (array bounds, subroutine interfaces, etc.) uniform and enforced legible coding style, using code processing tools C stubs/wrappers for libpthread, libDL (and eventually GPU kernels, etc.) C/C++ implementation of utility functions (strings, file operations, sockets, memory alloc/dealloc reference counting for debug mode, etc.) ( This may all seem "evident" modern programming assumptions, but in a legacy fortran world, most of these are big changes in the typical programmer workflow ) The goal with all that is to have trustworthy, maintainable and modular code. Whereas, in typical fortran, modularity is often not a primary goal, and code is trustworthy only if the original developer was very clever, and the code was not changed since then ! (i'm a bit joking here, but not much) I searched around for references about object-oriented fortran, programming-by-contract (assertions/preconditions/etc.), and found only ugly and outdated documents, syntaxes and papers done by people with no large-scale project involvement, and dead projects. Any good URL, advice, reference paper/books on the subject?

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• Is there a PHP benchmark that meets these specific criteria? [closed]

  - by Alex R

  I'm working on a tool which converts PHP code to Scala. As one of the finishing touches, I'm in need of a really good (er, somewhat biased) benchmark. By dumb luck my first benchmark attempt was with some code which uses bcmath extensively, which unfortunately is 1000x slower in Java, making the Scala code 22x slower overall than the original PHP. So I'm looking for some meaningful PHP benchmark with the following characteristics: The PHP source needs to be in a single file. It should solve a real-world problem. No silly looping over empty methods etc. I need it to be simple to setup - no databases, hard-to-find input files, etc. Simple text input and output preferred. It should not use features that are slow in Java (BigInteger, trigonometric functions, etc). It should not use exoteric or dynamic PHP functions (e.g. no "eval" or "variable vars"). It should not over-rely on built-in libraries, e.g. MD5, crypt, etc. It should not be I/O bound. A CPU-bound memory-hungry algorithm is preferred. Basically, intensive OO operations, integer and string manipulation, recursion, etc would be great. Thanks

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• Multiple WCF calls for a single ASP.NET page load

  - by Rodney Burton

  I have an existing asp.net web application I am redesigning to use a service architecture. I have the beginnings of an WCF service which I am able to call and perform functions with no problems. As far as updating data, it all makes sense. For example, I have a button that says Submit Order, it sends the data to the service, which does the processing. Here's my concern: If I have an ASP.NET page that shows me a list of orders (View Orders page), and at the top I have a bunch of drop down lists for order types, and other search criteria which is populated by querying different tables from the database (lookup tables, etc). I am hoping to eventually completely decouple the web application from the DB, and use data contracts to pass information between the BLL, the SOA, and the web app. With that said, how can I reduce the # of WCF calls needed to load my "View Orders" page? I would need to make 1 call get the list of orders, and 1 call for each drop down list, etc because those are populated by individual functions in my BLL. Is it good architecture to create a web service method that returns back a specialized data contract that consists of everything you would need to display a View Orders page, in 1 shot? Something like this pseudocode: public class ViewOrderPageDTO { public OrderDTO[] Orders { get; set; } public OrderTypesDTO[] OrderTypes { get; set; } public OrderStatusesDTO[] OrderStatuses { get; set; } public CustomerListDTO[] CustomerList { get; set; } } Or is it better practice in the page_load event to make 5 or 6 or even 15 individual calls to the SOA to get the data needed to load the page? Therefore, bypassing the need for specialized wcf methods or DTO's that conglomerate other DTO? Thanks for your input and suggestions.

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• iPhone app rejection for using ICU (Unicode extensions)

  - by nickbit

  I received the following mail form Apple, considering my application: *Thank you for submitting your update to ??µ??es?a to the App Store. During our review of your application we found it is using private APIs, which is in violation of the iPhone Developer Program License Agreement section 3.3.1; "3.3.1 Applications may only use Documented APIs in the manner prescribed by Apple and must not use or call any private APIs." While your application has not been rejected, it would be appropriate to resolve this issue in your next update. The following non-public APIs are included in your application: u_isspace ubrk_close ubrk_current ubrk_first ubrk_next ubrk_open If you have defined methods in your source code with the same names as the above mentioned APIs, we suggest altering your method names so that they no longer collide with Apple's private APIs to avoid your application being flagged with future submissions. Please resolve this issue in your next update to ??µ??es?a. Sincerely, iPhone App Review Team* The functions mentioned in this mail are used in the ICU library (International Components for Unicode). Although my app is not rejected at this point, I don't feel very secure for the future of my app, because it relies heavily on the Unicode protocol and on this components in particular. Another thing is that I do not call these functions directly, but they are called by a custom 'sqlite' build (with FTS3 extensions enabled). Am I missing something here? Any suggestions?

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• subtotals in columns usind reshape2 in R

  - by user1043144

  I have spent some time now learning RESHAPE2 and plyr but I still do not get it. This time I have a problem with (a) subtotals and (b) passing different aggregate functions . Here an example using data from the excellent tutorial on the blog of mrdwab http://news.mrdwab.com/ # libraries library(plyr) library(reshape2) # get data and add few more variables book.sales = read.csv("http://news.mrdwab.com/data-booksales") book.sales$Stock = book.sales$Quantity + 10 book.sales$SubjCat[(book.sales$Subject == 'Economics') | (book.sales$Subject == 'Management') ] <- '1_EconSciences' book.sales$SubjCat[book.sales$Subject %in% c('Anthropology', 'Politics', 'Sociology') ] <- '2_SocSciences' book.sales$SubjCat[book.sales$Subject %in% c('Communication', 'Fiction', 'History', 'Research', 'Statistics') ] <- '3_other' # to get to my starting dataframe (close to the project I am working on) book.sales1 <- ddply(book.sales, c('Region', 'Representative', 'SubjCat', 'Subject', 'Publisher'), summarize, Stock = sum(Stock), Sold = sum(Quantity), Ratio = round((100 * sum(Quantity)/ sum(Stock)), digits = 1)) #melt it m.book.sales = melt(data = book.sales1, id.vars = c('Region', 'Representative', 'SubjCat', 'Subject', 'Publisher'), measured.vars = c('Stock', 'Sold', 'Ratio')) # cast it Tab1 <- dcast(data = m.book.sales, formula = Region + Representative ~ Publisher + variable, fun.aggregate = sum, margins = c('Region', 'Representative')) Now my questions : I have been able to add the subtotals in rows. But is it possible also to add margins in the columns. Say for example, Totals of Stock for one Publisher ? Sorry I meant to say example total sold for all publishers There is a problem with the columns with “ratio”. How can I get “mean” instead of “sum” for this variable ? P.S: I have seen some examples using reshape. Will you recommend to use it instead of reshape2 (which seems not to include the functionalities of two functions).

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• performance of large number calculations in python (python 2.7.3 and .net 4.0)

  - by g36

  There is a lot of general questions about python performance in comparison to other languages. I've got more specific example: There are two simple functions wrote in python an c#, both checking if int number is prime. python: import time def is_prime(n): num =n/2 while num >1: if n % num ==0: return 0 num-=1 return 1 start = time.clock() probably_prime = is_prime(2147483629) elapsed = (time.clock() - start) print 'time : '+str(elapsed) and C#: using System.Diagnostics; public static bool IsPrime(int n) { int num = n/2; while(num >1) { if(n%num ==0) { return false; } num-=1; } return true; } Stopwatch sw = new Stopwatch(); sw.Start(); bool result = Functions.IsPrime(2147483629); sw.Stop(); Console.WriteLine("time: {0}", sw.Elapsed); And times ( which are surprise for me as a begginer in python:)): Python: 121s; c#: 6s Could You explain where does this big diffrence come from ?

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• Complex derived attributes in Django models

  - by rabidpebble

  What I want to do is implement submission scoring for a site with users voting on the content, much like in e.g. reddit (see the 'hot' function in http://code.reddit.com/browser/sql/functions.sql). My submission model currently keeps track of up and down vote totals. Currently, when a user votes I create and save a related Vote object and then use F() expressions to update the Submission object's voting totals. The problem is that I want to update the score for the submission at the same time, but F() expressions are limited to only simple operations (it's missing support for log(), date_part(), sign() etc.) From my limited experience with Django I can see 4 options here: extend F() somehow (haven't looked at the code yet) to support the missing SQL functions; this is my preferred option and seems to fit within the Django framework the best define a scoring function (much like reddit's 'hot' function) in my database, and have Django use the value of that function for the value of the score field; as far as I can tell, #2 is not possible wrap my two step voting process in a suitably isolated transaction so that I can calculate the voting totals in Python and then update the Submission's voting totals without fear that another vote against the submission could be added/changed in the meantime; I'm hesitant to take this route because it seems overly complex - what is a "suitably isolated transaction" in this case anyway? use raw SQL; I would prefer to avoid this entirely -- what's the point of an ORM if I have to revert to SQL for such a common use case as this! (Note that this coming from somebody who loves sprocs, but is using Django for ease of development.) Before I embark on this mission to extend F() (which I'm not sure is even possible), am I about to reinvent the wheel? Is there a more standard way to do this? It seems like such a common use case and yet in an hour of searching I have yet to find a common solution...

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• C# COM Cross Thread problem

  - by user364676

  Hi, we're developing a software to control a scientific measuring device. it provides a COM-Interface defines serveral functions to set measurement parameters and fires an event when it measured data. in order to test our software, i'm implementing a simulation of that device. the com-object runs a loop which periodically fires the event. another loop in the client app should now setup up the com-simulator using the given functions. i created a class for measuring parameters which will be instanciated when setting up a new measurement. // COM-Object public class MeasurementParams { public double Param1; public double Param2; } public class COM_Sim : ICOMDevice { public MeasurementParams newMeasurement; IClient client; public int NewMeasurement() { newMeasurment = new MeasurementParam(); } public int SetParam1(double val) { // why is newMeasurement null when method is called from client loop newMeasurement.Param1 = val; } void loop() { while(true) { // fire event client.HandleEvent; } } } public class Client : IClient { ICOMDevice server; public int HandleEvent() { // handle this event server.NewMeasurement(); server.SetParam1(0.0); } void loop() { while(true) { // do some stuff... server.NewMeasurement(); server.SetParam1(0.0); } } } both of the loops run in independent threads. when server.NewMeasurement() is called, the object on the server is set to a new instance. but in the next function, the object is null again. do the same when handling the server-event, it works perfectly, because the method runs in the servers thread. how to make it work from client-thread as well. as the client is meant to be working with the real device, i cannot modify the interfaces given by the manufactor. also i need to setup measurements independent from the event-handler, which will be fired not regulary. i assume this problem related to multithreaded-COM behavior but i found nothing on this topic.

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• In languages which create a new scope each time in a loop block, a new local copy of the local loop

  - by Jian Lin

  It seems that in language like C, Java, and Ruby (as opposed to Javascript), a new scope is created for each iteration of a loop block, and the local variable defined for the loop is actually made into a local variable every single time and recorded in this new scope? For example, in Ruby: p RUBY_VERSION $foo = [] (1..5).each do |i| $foo[i] = lambda { p i } end (1..5).each do |j| $foo[j].call() end the print out is: [MacBook01:~] $ ruby scope.rb "1.8.6" 1 2 3 4 5 [MacBook01:~] $ So, it looks like when a new scope is created, a new local copy of i is also created and recorded in this new scope, so that when the function is executed at a later time, the "i" is found in those scope chains as 1, 2, 3, 4, 5 respectively. Is this true? (It sounds like a heavy operation). Contrast that with p RUBY_VERSION $foo = [] i = 0 (1..5).each do |i| $foo[i] = lambda { p i } end (1..5).each do |j| $foo[j].call() end This time, the i is defined before entering the loop, so Ruby 1.8.6 will not put this i in the new scope created for the loop block, and therefore when the i is looked up in the scope chain, it always refer to the i that was in the outside scope, and give 5 every time: [MacBook01:~] $ ruby scope2.rb "1.8.6" 5 5 5 5 5 [MacBook01:~] $ I heard that in Ruby 1.9, i will be treated as a local defined for the loop even when there is an i defined earlier? The operation of creating a new scope, creating a new local copy of i each time through the loop seems heavy, as it seems it wouldn't have matter if we are not invoking the functions at a later time. So when the functions don't need to be invoked at a later time, could the interpreter and the compiler to C / Java try to optimize it so that there is not local copy of i each time?

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• Haskell math performance

  - by Travis Brown

  I'm in the middle of porting David Blei's original C implementation of Latent Dirichlet Allocation to Haskell, and I'm trying to decide whether to leave some of the low-level stuff in C. The following function is one example—it's an approximation of the second derivative of lgamma: double trigamma(double x) { double p; int i; x=x+6; p=1/(x*x); p=(((((0.075757575757576*p-0.033333333333333)*p+0.0238095238095238) *p-0.033333333333333)*p+0.166666666666667)*p+1)/x+0.5*p; for (i=0; i<6 ;i++) { x=x-1; p=1/(x*x)+p; } return(p); } I've translated this into more or less idiomatic Haskell as follows: trigamma :: Double -> Double trigamma x = snd $ last $ take 7 $ iterate next (x' - 1, p') where x' = x + 6 p = 1 / x' ^ 2 p' = p / 2 + c / x' c = foldr1 (\a b -> (a + b * p)) [1, 1/6, -1/30, 1/42, -1/30, 5/66] next (x, p) = (x - 1, 1 / x ^ 2 + p) The problem is that when I run both through Criterion, my Haskell version is six or seven times slower (I'm compiling with -O2 on GHC 6.12.1). Some similar functions are even worse. I know practically nothing about Haskell performance, and I'm not terribly interested in digging through Core or anything like that, since I can always just call the handful of math-intensive C functions through FFI. But I'm curious about whether there's low-hanging fruit that I'm missing—some kind of extension or library or annotation that I could use to speed up this numeric stuff without making it too ugly.

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• What am i doing wrong

  - by Erik Sapir

  I have the following code. I need B class to have a min priority queue of AToTime objects. AToTime have operator, and yet i receive error telling me than there is no operator matching the operands... #include <queue> #include <functional> using namespace std; class B{ //public functions public: B(); virtual ~B(); //private members private: log4cxx::LoggerPtr m_logger; class AToTime { //public functions public: AToTime(const ACE_Time_Value& time, const APtr a) : m_time(time), m_a(a){} bool operator >(const AToTime& other) { return m_time > other.m_time; } //public members - no point using any private members here public: ACE_Time_Value m_time; APtr m_a; }; priority_queue<AToTime, vector<AToTime>, greater<AToTime> > m_myMinHeap; };

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• Nusphere PHPEd: PHP Function Hints Lost Arguments?

  - by Eli

  Hi All, My PHPEd suddenly stopped showing arguments and arg order in the hints, and now just shows a basic description of the function. Before I go digging around in the config files, has anyone else had this problem? Thanks! Edit: Sorry, I may not have been entirely clear on this. There is no problem with my own classes, only with the actual php functions. Example: How it used to work: I type a PHP function, say strpos. As soon as I type the '(' at the end of it, I get the little yellow box, showing something like this: int strpos ( string $haystack , mixed $needle [, int $offset=0 ] ) with the first argument bold. If I type it, and then a comma, it bolds the second arg, and so on. This is really nice, since PHP functions are a bit scrambled as far as argument order, and I don't have to look them up every time. How it works now: I type a php function, say strpos. As soon as I type the '(' at the end of it, I get the little yellow box. It says something like "strpos - Returns the numeric position of the first occurrence of needle in the haystack string." There are no arguments shown, which makes the little box basically worthless - I know what strpos does, I just want a reminder of the argument order. I think this may be a problem with the included PHPDoc, which I never use, but may be the source of the data for the hint box. I did recently upgrade to 5.6, but ended up removing it and restoring 5.2. I installed to a different folder, and uninstalled from there, but it may have overwritten something in the original folder? I'm using v5.2 (5220). Thanks!

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• Multiplication of 2 positive numbers giving a negative result

  - by krandiash

  My program is an implementation of a bloom filter. However, when I'm storing my hash function results in the bit array, the function (of the form f(i) = (a*i + b) % m where a,b,i,m are all positive integers) is giving me a negative result. The problem seems to be in the calculation of a*i which is coming out to be negative. Ignore the print statements in the code; those were for debugging. Basically, the value of temp in this block of code is coming out to be negative and so I'm getting an ArrayOutOfBoundsException. m is the bit array length, z is the number of hash functions being used, S is the set of values which are members of this bloom filter and H stores the values of a and b for the hash functions f1, f2, ..., fz. public static int[] makeBitArray(int m, int z, ArrayList<Integer> S, int[] H) { int[] C = new int[m]; for (int i = 0; i < z; i++) { for (int q = 0; q < S.size() ; q++) { System.out.println(H[2*i]); int temp = S.get(q)*(H[2*i]); System.out.println(temp); System.out.println(S.get(q)); System.out.println(H[2*i + 1]); System.out.println(m); int t = ((H[2*i]*S.get(q)) + H[2*i + 1])%m; System.out.println(t); C[t] = 1; } } return C; } Any help is appreciated.

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• Setting Connection Parameters via ADO for SQL Server

  - by taspeotis

  Is it possible to set a connection parameter on a connection to SQL Server and have that variable persist throughout the life of the connection? The parameter must be usable by subsequent queries. We have some old Access reports that use a handful of VBScript functions in the SQL queries (let's call them GetStartDate and GetEndDate) that return global variables. Our application would set these before invoking the query and then the queries can return information between date ranges specified in our application. We are looking at changing to a ReportViewer control running in local mode, but I don't see any convenient way to use these custom functions in straight T-SQL. I have two concept solutions (not tested yet), but I would like to know if there is a better way. Below is some pseudo code. Set all variables before running Recordset.OpenForward Connection->Execute("SET @GetStartDate = ..."); Connection->Execute("SET @GetEndDate = ..."); // Repeat for all parameters Will these variables persist to later calls of Recordset->OpenForward? Can anything reset the variables aside from another SET/SELECT @variable statement? Create an ADOCommand "factory" that automatically adds parameters to each ADOCommand object I will use to execute SQL // Command has been previously been created ADOParameter *Parameter1 = Command->CreateParameter("GetStartDate"); ADOParameter *Parameter2 = Command->CreateParameter("GetEndDate"); // Set values and attach etc... What I would like to know if there is something like: Connection->SetParameter("GetStartDate", "20090101"); Connection->SetParameter("GetEndDate", 20100101"); And these will persist for the lifetime of the connection, and the SQL can do something like @GetStartDate to access them. This may be exactly solution #1, if the variables persist throughout the lifetime of the connection.

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• Excel Automation Addin UDFs not accesible

  - by Eric

  I created the following automation addin: namespace AutomationAddin { [Guid("6652EC43-B48C-428a-A32A-5F2E89B9F305")] [ClassInterface(ClassInterfaceType.AutoDual)] [ComVisible(true)] public class MyFunctions { public MyFunctions() { } #region UDFs public string ToUpperCase(string input) { return input.ToUpper(); } #endregion [ComRegisterFunctionAttribute] public static void RegisterFunction(Type type) { Registry.ClassesRoot.CreateSubKey( GetSubKeyName(type, "Programmable")); RegistryKey key = Registry.ClassesRoot.OpenSubKey( GetSubKeyName(type, "InprocServer32"), true); key.SetValue("", System.Environment.SystemDirectory + @"\mscoree.dll", RegistryValueKind.String); } [ComUnregisterFunctionAttribute] public static void UnregisterFunction(Type type) { Registry.ClassesRoot.DeleteSubKey( GetSubKeyName(type, "Programmable"), false); } private static string GetSubKeyName(Type type, string subKeyName) { System.Text.StringBuilder s = new System.Text.StringBuilder(); s.Append(@"CLSID\{"); s.Append(type.GUID.ToString().ToUpper()); s.Append(@"}\"); s.Append(subKeyName); return s.ToString(); } } } I build it and it registers just fine. I open excel 2003, go to tools-Add-ins, click on the automation button and the addin appears in the list. I add it and it shows up in the addins list. but, the functions themselves don't appear. If I type it in it doesn't work and if I look in the function wizard, my addin doesn't show up as a category and the functions are not in the list. I am using excel 2003 on windows 7 x86. I built the project with visual studio 2010. This addin worked fine on windows xp built with visual studio 2008.

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• Calculating confidence intervals for a non-normal distribution

  - by Josiah

  Hi all, First, I should specify that my knowledge of statistics is fairly limited, so please forgive me if my question seems trivial or perhaps doesn't even make sense. I have data that doesn't appear to be normally distributed. Typically, when I plot confidence intervals, I would use the mean +- 2 standard deviations, but I don't think that is acceptible for a non-uniform distribution. My sample size is currently set to 1000 samples, which would seem like enough to determine if it was a normal distribution or not. I use Matlab for all my processing, so are there any functions in Matlab that would make it easy to calculate the confidence intervals (say 95%)? I know there are the 'quantile' and 'prctile' functions, but I'm not sure if that's what I need to use. The function 'mle' also returns confidence intervals for normally distributed data, although you can also supply your own pdf. Could I use ksdensity to create a pdf for my data, then feed that pdf into the mle function to give me confidence intervals? Also, how would I go about determining if my data is normally distributed. I mean I can currently tell just by looking at the histogram or pdf from ksdensity, but is there a way to quantitatively measure it? Thanks!

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• Setting Connection Parameters via ADO for MSSQL

  - by taspeotis

  Is it possible to set a connection parameter on a connection to SQL Server and have that variable persist throughout the life of the connection? The parameter must be usable by subsequent queries. We have some old Access reports that use a handful of VBScript functions in the SQL queries (let's call them GetStartDate and GetEndDate) that return global variables. Our application would set these before invoking the query and then the queries can return information between date ranges specified in our application. We are looking at changing to a ReportViewer control running in local mode, but I don't see any convenient way to use these custom functions in straight T-SQL. I have two concept solutions (not tested yet), but I would like to know if there is a better way. Below is some psuedo code. Set all variables before running Recordset.OpenForward Connection->Execute("SET @GetStartDate = ..."); Connection->Execute("SET @GetEndDate = ..."); // Repeat for all parameters Will these variables persist to later calls of Recordset->OpenForward? Can anything reset the variables aside from another SET/SELECT @variable statement? Create an ADOCommand "factory" that automatically adds parameters to each ADOCommand object I will use to execute SQL // Command has been previously been created ADOParameter *Parameter1 = Command->CreateParameter("GetStartDate"); ADOParameter *Parameter2 = Command->CreateParameter("GetEndDate"); // Set values and attach etc... What I would like to know if there is something like: Connection->SetParameter("GetStartDate", "20090101"); Connection->SetParameter("GetEndDate", 20100101"); And these will persist for the lifetime of the connection, and the SQL can do something like @GetStartDate to access them. This may be exactly solution #1, if the variables persist throughout the lifetime of the connection.

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• Generating lognormally distributed random number from mean, coeff of variation

  - by Richie Cotton

  Most functions for generating lognormally distributed random numbers take the mean and standard deviation of the associated normal distribution as parameters. My problem is that I only know the mean and the coefficient of variation of the lognormal distribution. It is reasonably straight forward to derive the parameters I need for the standard functions from what I have: If mu and sigma are the mean and standard deviation of the associated normal distribution, we know that coeffOfVar^2 = variance / mean^2 = (exp(sigma^2) - 1) * exp(2*mu + sigma^2) / exp(mu + sigma^2/2)^2 = exp(sigma^2) - 1 We can rearrange this to sigma = sqrt(log(coeffOfVar^2 + 1)) We also know that mean = exp(mu + sigma^2/2) This rearranges to mu = log(mean) - sigma^2/2 Here's my R implementation rlnorm0 <- function(mean, coeffOfVar, n = 1e6) { sigma <- sqrt(log(coeffOfVar^2 + 1)) mu <- log(mean) - sigma^2 / 2 rlnorm(n, mu, sigma) } It works okay for small coefficients of variation r1 <- rlnorm0(2, 0.5) mean(r1) # 2.000095 sd(r1) / mean(r1) # 0.4998437 But not for larger values r2 <- rlnorm0(2, 50) mean(r2) # 2.048509 sd(r2) / mean(r2) # 68.55871 To check that it wasn't an R-specific issue, I reimplemented it in MATLAB. (Uses stats toolbox.) function y = lognrnd0(mean, coeffOfVar, sizeOut) if nargin < 3 || isempty(sizeOut) sizeOut = [1e6 1]; end sigma = sqrt(log(coeffOfVar.^2 + 1)); mu = log(mean) - sigma.^2 ./ 2; y = lognrnd(mu, sigma, sizeOut); end r1 = lognrnd0(2, 0.5); mean(r1) % 2.0013 std(r1) ./ mean(r1) % 0.5008 r2 = lognrnd0(2, 50); mean(r2) % 1.9611 std(r2) ./ mean(r2) % 22.61 Same problem. The question is, why is this happening? Is it just that the standard deviation is not robust when the variation is that wide? Or have a screwed up somewhere?

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• Handling missing/incomplete data in R--is there function to mask but not remove NAs?

  - by doug

  As you would expect from a DSL aimed at data analysis, R handles missing/incomplete data very well, for instance: Many R functions have an 'na.rm' flag that you can set to 'T' to remove the NAs: mean( c(5,6,12,87,9,NA,43,67), na.rm=T) But if you want to deal with NAs before the function call, you need to do something like this: to remove each 'NA' from a vector: vx = vx[!is.na(a)] to remove each 'NA' from a vector and replace it w/ a '0': ifelse(is.na(vx), 0, vx) to remove entire each row that contains 'NA' from a data frame: dfx = dfx[complete.cases(dfx),] All of these functions permanently remove 'NA' or rows with an 'NA' in them. Sometimes this isn't quite what you want though--making an 'NA'-excised copy of the data frame might be necessary for the next step in the workflow but in subsequent steps you often want those rows back (e.g., to calculate a column-wise statistic for a column that has missing rows caused by a prior call to 'complete cases' yet that column has no 'NA' values in it). to be as clear as possible about what i'm looking for: python/numpy has a class, 'masked array', with a 'mask' method, which lets you conceal--but not remove--NAs during a function call. Is there an analogous function in R?

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• How would I send a POST Request via Ajax?

  - by Gotactics

  I have a php page, Post.php it recieves the POST's Action, and that has two functions. Insert, and Update.Now how would I go about posting INSERT with this Ajax code. The code posts update fine but is doesnt post insert at all. $(document).ready(function(){ //global vars var inputUser = $("#nick"); var inputMessage = $("#message"); var loading = $("#loading"); var messageList = $(".content ul"); //functions function updateShoutbox(){ //just for the fade effect messageList.hide(); loading.fadeIn(); //send the post to shoutbox.php $.ajax({ type: "POST", url: "Shoutbox.php", data: "action=update", complete: function(data){ loading.fadeOut(); messageList.html(data.responseText); messageList.fadeIn(2000); } }); } //check if all fields are filled function checkForm(){ if(inputUser.attr("value") && inputMessage.attr("value")) return true; else return false; } //Load for the first time the shoutbox data updateShoutbox(); //on submit event $("#form").submit(function(){ if(checkForm()){ var nick = inputUser.attr("value"); var message = inputMessage.attr("value"); //we deactivate submit button while sending $("#send").attr({ disabled:true, value:"Sending..." }); $("#send").blur(); //send the post to shoutbox.php $.ajax({ type: "GET", url: "Shoutbox.php", data: "action=insert&nick=" + nick + "&message=" + message, complete: function(data){ messageList.html(data.responseText); updateShoutbox(); //reactivate the send button $("#send").attr({ disabled:false, value:"Shout it!" }); } }); } else alert("Please fill all fields!"); //we prevent the refresh of the page after submitting the form return false; }); });emphasized text

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• Database Functional Programming in Clojure

  - by Ralph

  "It is tempting, if the only tool you have is a hammer, to treat everything as if it were a nail." - Abraham Maslow I need to write a tool to dump a large hierarchical (SQL) database to XML. The hierarchy consists of a Person table with subsidiary Address, Phone, etc. tables. I have to dump thousands of rows, so I would like to do so incrementally and not keep the whole XML file in memory. I would like to isolate non-pure function code to a small portion of the application. I am thinking that this might be a good opportunity to explore FP and concurrency in Clojure. I can also show the benefits of immutable data and multi-core utilization to my skeptical co-workers. I'm not sure how the overall architecture of the application should be. I am thinking that I can use an impure function to retrieve the database rows and return a lazy sequence that can then be processed by a pure function that returns an XML fragment. For each Person row, I can create a Future and have several processed in parallel (the output order does not matter). As each Person is processed, the task will retrieve the appropriate rows from the Address, Phone, etc. tables and generate the nested XML. I can use a a generic function to process most of the tables, relying on database meta-data to get the column information, with special functions for the few tables that need custom processing. These functions could be listed in a map(table name -> function). Am I going about this in the right way? I can easily fall back to doing it in OO using Java, but that would be no fun. BTW, are there any good books on FP patterns or architecture? I have several good books on Clojure, Scala, and F#, but although each covers the language well, none look at the "big picture" of function programming design.

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• Using unset member variables within a class or struct

  - by Doug Kavendek

  It's pretty nice to catch some really obvious errors when using unset local variables or when accessing a class or struct's members directly prior to initializing them. In visual studio 2008 you get an "uninitialized local variable used" warning at compile-time and get a run-time check failure at the point of access when debugging. However, if you access an uninitialized struct's member variable through one of its functions, you don't get any warnings or assertions. Obviously the easiest solution is don't do that, but nobody's perfect. For example: struct Test { float GetMember() const { return member; } float member; }; Test test; float f1 = test.member; // Raises warning, asserts in VS debugger at runtime float f2 = test.GetMember(); // No problem, just keeps on going This surprised me, but it makes some sense -- the compiler can't assume calling a function on an unused struct is an error, or how else would you initialize or construct it? And anything fancier just quickly brings up so many other complications that it makes sense that it wouldn't bother classifying which functions are ok to call and when, especially just as a debugging help. I know I can set up my own assertions or error checking within the class itself, but that can complicate some simpler structs. Still, it would seem like within the context of the function call, wouldn't it know insides GetMember() that member wasn't initialized yet? I'm assuming it's not only relying on static compile-time deduction, given the Run-Time Check Failure #3 it raises during execution, so based on my current understanding of it it would seem reasonable for the same checks to apply. Is this just a limitation of this specific compiler/debugger (Visual Studio 2008), or more tied to how C++ works?

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• SQL Server database change workflow best practices

  - by kubi

  The Background My group has 4 SQL Server Databases: Production UAT Test Dev I work in the Dev environment. When the time comes to promote the objects I've been working on (tables, views, functions, stored procs) I make a request of my manager, who promotes to Test. After testing, she submits a request to an Admin who promotes to UAT. After successful user testing, the same Admin promotes to Production. The Problem The entire process is awkward for a few reasons. Each person must manually track their changes. If I update, add, remove any objects I need to track them so that my promotion request contains everything I've done. In theory, if I miss something testing or UAT should catch it, but this isn't certain and it's a waste of the tester's time, anyway. Lots of changes I make are iterative and done in a GUI, which means there's no record of what changes I made, only the end result (at least as far as I know). We're in the fairly early stages of building out a data mart, so the majority of the changes made, at least count-wise, are minor things: changing the data type for a column, altering the names of tables as we crystallize what they'll be used for, tweaking functions and stored procs, etc. The Question People have been doing this kind of work for decades, so I imagine there have got to be a much better way to manage the process. What I would love is if I could run a diff between two databases to see how the structure was different, use that diff to generate a change script, use that change script as my promotion request. Is this possible? If not, are there any other ways to organize this process? For the record, we're a 100% Microsoft shop, just now updating everything to SQL Server 2008, so any tools available in that package would be fair game.

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• Raphael.js: Adding a new custom element

  - by Claudia

  I would like to create a custom Raphael element, with custom properties and functions. This object must also contain predefined Raphael objects. For example, I would have a node class, that would contain a circle with text and some other elements inside it. The problem is to add this new object to a set. These demands are needed because non-Raphael objects cannot be added to sets. As a result, custom objects that can contain Raphael objects cannot be used. The code would look like this: var Node = function (paper) { // Coordinates & Dimensions this.x = 0, this.y = 0, this.radius = 0, this.draw = function () { this.entireSet = paper.set(); var circle = paper.circle(this.x, this.y, this.radius); this.circleObj = circle; this.entireSet.push(circle); var text = paper.text(this.x, this.y, this.text); this.entireSet.push(text); } // other functions } var NodeList = function(paper){ this.nodes = paper.set(), this.populateList = function(){ // in order to add a node to the set // the object must be of type Raphael object // otherwise the set will have no elements this.nodes.push(// new node) } this.nextNode = function(){ // ... } this.previousNode = function(){ // ... } }

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• Is extending a base class with non-virtual destructor dangerous in C++

  - by Akusete

  Take the following code class A { }; class B : public A { }; class C : public A { int x; }; int main (int argc, char** argv) { A* b = new B(); A* c = new C(); //in both cases, only ~A() is called, not ~B() or ~C() delete b; //is this ok? delete c; //does this line leak memory? return 0; } when calling delete on a class with a non-virtual destructor with member functions (like class C), can the memory allocator tell what the proper size of the object is? If not, is memory leaked? Secondly, if the class has no member functions, and no explicit destructor behaviour (like class B), is everything ok? I ask this because I wanted to create a class to extend std::string, (which I know is not recommended, but for the sake of the discussion just bear with it), and overload the +=,+ operator. -Weffc++ gives me a warning because std::string has a non virtual destructor, but does it matter if the sub-class has no members and does not need to do anything in its destructor? -- FYI the += overload was to do proper file path formatting, so the path class could be used like class path : public std::string { //... overload, +=, + //... add last_path_component, remove_path_component, ext, etc... }; path foo = "/some/file/path"; foo = foo + "filename.txt"; //and so on... I just wanted to make sure someone doing this path* foo = new path(); std::string* bar = foo; delete bar; would not cause any problems with memory allocation

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