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  • improve my python program to fetch the desire rows by using if condition

    - by user2560507
    unique.txt file contains: 2 columns with columns separated by tab. total.txt file contains: 3 columns each column separated by tab. I take each row from unique.txt file and find that in total.txt file. If present then extract entire row from total.txt and save it in new output file. ###Total.txt column a column b column c interaction1 mitochondria_205000_225000 mitochondria_195000_215000 interaction2 mitochondria_345000_365000 mitochondria_335000_355000 interaction3 mitochondria_345000_365000 mitochondria_5000_25000 interaction4 chloroplast_115000_128207 chloroplast_35000_55000 interaction5 chloroplast_115000_128207 chloroplast_15000_35000 interaction15 2_10515000_10535000 2_10505000_10525000 ###Unique.txt column a column b mitochondria_205000_225000 mitochondria_195000_215000 mitochondria_345000_365000 mitochondria_335000_355000 mitochondria_345000_365000 mitochondria_5000_25000 chloroplast_115000_128207 chloroplast_35000_55000 chloroplast_115000_128207 chloroplast_15000_35000 mitochondria_185000_205000 mitochondria_25000_45000 2_16595000_16615000 2_16585000_16605000 4_2785000_2805000 4_2775000_2795000 4_11395000_11415000 4_11385000_11405000 4_2875000_2895000 4_2865000_2885000 4_13745000_13765000 4_13735000_13755000 My program: file=open('total.txt') file2 = open('unique.txt') all_content=file.readlines() all_content2=file2.readlines() store_id_lines = [] ff = open('match.dat', 'w') for i in range(len(all_content)): line=all_content[i].split('\t') seq=line[1]+'\t'+line[2] for j in range(len(all_content2)): if all_content2[j]==seq: ff.write(seq) break Problem: but istide of giving desire output (values of those 1st column that fulfile the if condition). i nead somthing like if jth of unique.txt == ith of total.txt then write ith row of total.txt into new file.

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  • Python Eggs on Google App Engine

    - by ott
    Usually I would use virtualenv and pip for deployment of web applications. With Google App Engine this doesn't work, because all import statement are relative to directory of the application. The most common approach I saw was to simply copy the packages from site-packages to the directory of the application. This involves manual work and is error-prone. Another approach was to changes install_lib and install_scripts in ~/.pydisutils.cfg, but this doesn't allow me to use pip in my home directory simultaneously. Do you have any suggestions for this?

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  • How to add columns to sqlite3 python?

    - by user291071
    I know this is simple but I can't get it working! I have no probs with insert,update or select commands, Lets say I have a dictionary and I want to populate a table with the column names in the dictionary what is wrong with my one line where I add a column? ##create con = sqlite3.connect('linksauthor.db') c = con.cursor() c.execute('''create table linksauthor (links text)''') con.commit() c.close() ##populate author columns allauthors={'joe':1,'bla':2,'mo':3} con = sqlite3.connect('linksauthor.db') c = con.cursor() for author in allauthors: print author print type(author) c.execute("alter table linksauthor add column '%s' 'float'")%author ##what is wrong here? con.commit() c.close()

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  • Concatenate String to Evernote Markup Language (ENML) in python

    - by Adam the Mediocre
    I am looking to add a string containing the user's text input to the note.content of my note. After reading, I have found how to add resources, but I don't want the resource to be an attachment, I want it to be the actual text. Here is some of the code: title= self.textEditTitle.text() body= self.textEditBody.text() auth_token = "secret stuff!" client = EvernoteClient(token=auth_token, sandbox=True) note_store = client.get_note_store() nBody = "<?xml version=\"1.0\" encoding=\"UTF-8\"?>" nBody += "<!DOCTYPE en-note SYSTEM \"http://xml.evernote.com/pub/enml2.dtd\">" nBody += "<en-note>%s</en-note>" % body note = Types.Note() note.title = title note.content= nBody Any advice would be great, as I'm just starting out with this api and it looks like it's full of potential once I figure it out! Here is what I have been mostly reading from: http://dev.evernote.com/documentation/cloud/chapters/ENML.php

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  • Python: HTTP Post a large file with streaming

    - by Daniel Von Fange
    I'm uploading potentially large files to a web server. Currently I'm doing this: import urllib2 f = open('somelargefile.zip','rb') request = urllib2.Request(url,f.read()) request.add_header("Content-Type", "application/zip") response = urllib2.urlopen(request) However, this reads the entire file's contents into memory before posting it. How can I have it stream the file to the server?

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  • python gui events out of order

    - by dave
    from Tkinter import * from tkMessageBox import * class Gui: def __init__(self, root): self.container = Frame(root) self.container.grid() self.inputText = Text(self.container, width=50, height=8) self.outputText = Text(self.container, width=50, height=8, bg='#E0E0E0', state=DISABLED) self.inputText.grid(row=0, column=0) self.outputText.grid(row=0, column=1) self.inputText.bind("<Key>", self.translate) def translate(self, event): input = self.inputText.get(0.0, END) output = self.outputText.get(0.0, END) self.outputText.config(state=NORMAL) self.outputText.delete(0.0, END) self.outputText.insert(INSERT, input) self.outputText.config(state=DISABLED) showinfo(message="Input: %s characters\nOutput: %s characters" % (len(input), len(input))) root = Tk() #toplevel object app = Gui(root) #call to the class where gui is defined root.mainloop() #enter event loop Working on a gui in tkinter I'm a little confused as to the sequence the event handlers are run. If you run the above code you'll hopefully see... 1) Editing the text widget triggers the event handler but it seems to fire it off without registering the actual change, 2) Even when the text widget is cleared (ie, keep pressing BackSpace) it still seems to have a one character length string, 3) The output widget only receives its update when the NEXT event trigger is fired despite the fact the data came on the previous event. Is this just how bindings work in tkinter or am i missing something here? The behaviour i would like when updating the input widget is: 1) Show the change, 2) Enter event handler, 3) Update output widget, 4) Show message box.

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  • Get class of caller's method (via inspect) in Python (alt: super() emulator)

    - by Slava Vishnyakov
    Is it possible to get reference to class B in this example? class A(object): pass class B(A): def test(self): test2() class C(B): pass import inspect def test2(): frame = inspect.currentframe().f_back cls = frame.[?something here?] # cls here should == B (class) c = C() c.test() Basically, C is child of B, B is child of A. Then we create c of type C. Then the call to c.test() actually calls B.test() (via inheritance), which calls to test2(). test2() can get the parent frame frame; code reference to method via frame.f_code; self via frame.f_locals['self']; but type(frame.f_locals['self']) is C (of course), but not B, where method is defined. Any way to get B?

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  • Python: For loop problem

    - by James
    I have a PSP page with html embedded. I need to place another for loop so i can insert another %s next to background-color: which will instert a appropriate colour to colour in the html table. For example i need to insert for z in colours so it can loop over the colours list and insert the correct colour. Where ever i try to insert the for loop it doesnt seem to work it most commonly colours each cell in the table 60 times then moves onto the next cell and repeats itself and crashes my web browser. The colours are held in a table called colours. code below: <table> <% s = ''.join(aa[i] for i in table if i in aa) for i in range(0, len(s), 60): req.write('<tr><td><TT>%04d</td>' % (i+1)); for k in s[i:i+60]: req.write('<TT><td><TT><font style="background-color:">%s<font></td>' % (k)); req.write('</TT></tr>') #end %> </table>

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  • I want to design a html form in python

    - by VaIbHaV-JaIn
    when user will enter details in the text box on the html from <h1>Please enter new password</h1> <form method="POST" enctype="application/json action="uid"> Password<input name="passwd"type="password" /><br> Retype Password<input name="repasswd" type="password" /><br> <input type="Submit" /> </form> </body> i want to post the data in json format through http post request and also i want to set content-type = application/json

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  • How to remove commas etc from a matrix in python

    - by robert
    say ive got a matrix that looks like: [[0, 0, 0, 0, 0], [0, 0, 0, 0, 0], [0, 0, 0, 0, 0]] how can i make it on seperate lines: [[0, 0, 0, 0, 0], [0, 0, 0, 0, 0], [0, 0, 0, 0, 0]] and then remove commas etc: 0 0 0 0 0 And also to make it blank instead of 0's, so that numbers can be put in later, so in the end it will be like: _ 1 2 _ 1 _ 1 (spaces not underscores) thanks

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  • Python: Getting the attribute name that the created object will be given

    - by cool-RR
    Before I ask this, do note: I want this for debugging purposes. I know that this is going to be some bad black magic, but I want to use it just during debugging so I could identify my objects more easily. It's like this. I have some object from class A that creates a few B instances as attributes: class A(object): def __init__(self) self.vanilla_b = B() self.chocolate_b = B() class B(object): def __init__(self): # ... What I want is that in B.__init__, it will figure out the "vanilla_b" or whatever attribute name it was given, and then put that as the .name attribute to this specific B. Then in debugging when I see some B object floating around, I could know which one it is. Is there any way to do this?

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  • How to fix this python program?

    - by Phenom
    import math def p(n): return 393000*((288200/393000)^n * math.exp(-(288200/393000)))/math.factorial(n) print p(3) When I run it, I get the following error message: Traceback (most recent call last): File "poisson.py", line 6, in <module> print p(3) File "poisson.py", line 4, in p return 393000*((288200/393000)^n * math.exp(-(288200/393000)))/math.factoria l(n) TypeError: unsupported operand type(s) for ^: 'int' and 'float'

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  • Calling a method with getattr in Python

    - by brain_damage
    How to call a method using getattr? I want to create a metaclass, which can call non-existing methods of some other class that start with the word 'oposite_'. The method should have the same number of arguments, but to return the opposite result. def oposite(func): return lambda s, *args, **kw: not oposite(s, *args, **kw) class Negate(type): def __getattr__(self, name): if name.startswith('oposite_'): return oposite(self.__getattr__(name[8:])) def __init__(self,*args,**kwargs): self.__getattr__ = Negate.__getattr__ class P(metaclass=Negate): def yep(self): return True But the problem is that self.__getattr__(sth) returns a NoneType object. >>> p = P() >>> p.oposite_yep() Traceback (most recent call last): File "<pyshell#115>", line 1, in <module> p.oposite_yep() TypeError: <lambda>() takes at least 1 positional argument (0 given) How to deal with this?

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  • Python named print?

    - by Mark
    I know it's a really simple question, but I have no idea how to google it. how can I do print '<a href="%s">%s</a>' % (my_url) So that my_url is used twice? I assume I have to "name" the %s and then use a dict in the params, but I'm not sure of the proper syntax? just FYI, I'm aware I can just use my_url twice in the params, but that's not the point :)

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  • python class decorator question?

    - by nsharish
    decorator 1: def dec(f): def wrap(obj, *args, **kwargs): f(obj, *args,**kwargs) return wrap decorator 2: class dec: def __init__(self, f): self.f = f def __call__(self, obj, *args, **kwargs): self.f(obj, *args, **kwargs) A sample class, class Test: @dec def disp(self, *args, **kwargs): print(*args,**kwargs) The follwing code works with decorator 1 but not with decorator 2. a = Test() a.disp("Message") I dont understand why decorator 2 is not working here. Can someone help me with this?

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  • searching a list of tuples in python

    - by hdx
    So I have a list of tuple like: [(1,"juca"),(22,"james"),(53,"xuxa"),(44,"delicia")] I want this list for a tuple whose number value is equal to something. So that if I do search(53) it will return 2 Is is an easy way to do that?

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  • Python Tkinter comparing PhotoImage objects

    - by Kyle Schmidt
    In a simple LightsOut game, when I click on a light I need to toggle the image on a button. I'm doing this with Tkinter, so I thought I'd just check and see what image is currently on the button (either 'on.gif' or 'off.gif') and set it to the other one, like this: def click(self,x,y): if self.buttons[x][y].image == self.on: self.buttons[x][y].config(image=self.off) self.buttons[x][y].image == self.off else: self.buttons[x][y].config(image=self.on) self.buttons[x][y].image == self.on This ends up always being True - I can turn a lgiht off, but never turn it back on. Did some research, realized that I should probably be using cmp: def click(self,x,y): if cmp(self.buttons[x][y].image,self.on) == 0: self.buttons[x][y].config(image=self.off) self.buttons[x][y].image == self.off else: self.buttons[x][y].config(image=self.on) self.buttons[x][y].image == self.on But that gave me the exact same result. Both self.on and self.off are PhotoImage objects. Aside from keeping a separate set of lists which tracks what type of light is in each position and redrawing them every click, is there a way to directly compare two PhotoImage objects like this?

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  • Python and hebrew encoding/decoding error

    - by user340495
    Hey, I have sqlite database which I would like to insert values in Hebrew to I am keep getting the following error : UnicodeDecodeError: 'ascii' codec can't decode byte 0xd7 in position 0: ordinal not in range(128) my code is as following : runsql(u'INSERT into personal values(%(ID)d,%(name)s)' % {'ID':1,'name':fabricate_hebrew_name()}) def fabricate_hebrew_name(): hebrew_names = [u'????',u'???',u'???',u'???',u'????',u'???',u'????',u'???',u'????',u'?????',u'????',u'???',u'????'] return random.sample(names,1)[0].encode('utf-8') note: runsql executing the query on the sqlite database fabricate_hebrew_name() should return a string which could be used in my SQL query. any help is much appreciated.

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  • super() in Python 2.x without args

    - by Slava Vishnyakov
    Trying to convert super(B, self).method() into a simple nice bubble() call. Did it, see below! Is it possible to get reference to class B in this example? class A(object): pass class B(A): def test(self): test2() class C(B): pass import inspect def test2(): frame = inspect.currentframe().f_back cls = frame.[?something here?] # cls here should == B (class) c = C() c.test() Basically, C is child of B, B is child of A. Then we create c of type C. Then the call to c.test() actually calls B.test() (via inheritance), which calls to test2(). test2() can get the parent frame frame; code reference to method via frame.f_code; self via frame.f_locals['self']; but type(frame.f_locals['self']) is C (of course), but not B, where method is defined. Any way to get B?

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  • List comprehension from multiple sources in Python?

    - by Noah
    Is it possible to replace the following with a list comprehension? res = [] for a, _, c in myList: for i in c: res.append((a, i)) For example: # Input myList = [("Foo", None, [1, 2, 3]), ("Bar", None, ["i", "j"])] # Output res = [("Foo", 1), ("Foo", 2), ("Foo", 3), ("Bar", "i"), ("Bar", "j")]

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  • Object-oriented GUI development in python

    - by ptabatt
    Hey guys, new programmer here. I have an assignment for class and I'm stuck... What I need to do is a create a GUI that gives someone a basic arithmetic problem in one box, asks the person to answer it, evaluates it, and tells you if you're right or wrong... Basically, what I have is this: [code] class Lesson(Frame): def init (self, parent=None): Frame.init(self, parent) self.pack() Lesson.make_widgets(self) def make_widgets(self): Label(self, text="").pack(side=TOP) ent = Entry(self) self.a = randrange(1,10) self.b = randrange(1,10) self.expr = choice(["+","-"]) ent.insert(END, str(self.a) + str(self.expr) + str(self.a)) [/code] I've broken this down into many little steps and basically, what I'm trying to do right now is insert a default random expression into the first entry widget. When I run this code, I just get a blank Label. Why is that? How can I put a something like "7+7" into the box? If you absolutely need background to the problem, it's question #3 on this link. http://reed.cs.depaul.edu/lperkovic/csc242/homeworks/Homework8.html -Thanks for all help in advance.

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