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  • How to extract a couple marked strings from a line (python)

    - by GoJian
    My Friends, I spent quite some time on this one... but cannot yet figure out a better way to do it. I am coding in python, by the way. So, here is a line of text in a file I am working with, for example: "ref|ZP_01631227.1| 3-dehydroquinate synthase [Nodularia spumigena CCY9414]..." How can I extract the two strings "ZP_01631227.1" and "Nodularia spumigena CCY9414" from the line? The pairs of "| |" and brackets are like markers so we know we want to get the strings in between the two... I guess I can probably loop over all the characters in the line and do it the hard way. It just takes so much time... Wondering if there is a python library or other smart ways to do it nicely? Thanks to all!

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  • Embedding Python and adding C functions to the interpreter

    - by monoceres
    I'm currently writing an applications that embedds the python interpreter. The idea is to have the program call user specified scripts on certain events in the program. I managed this part but now I want the scripts to be able to call functions in my program. Here's my code so far: #include "python.h" static PyObject* myTest(PyObject* self,PyObject *args) { return Py_BuildValue("s","123456789"); } static PyMethodDef myMethods[] = {{"myTest",myTest},{NULL,NULL}}; int main() { Py_Initialize(); Py_InitModule("PROGRAM",myMethods); PyRun_SimpleString("print PROGRAM.myTest()"); Py_Finalize(); } Thanks!

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  • Why does Python's __import__ require fromlist?

    - by ieure
    In Python, if you want to programmatically import a module, you can do: module = __import__('module_name') If you want to import a submodule, you would think it would be a simple matter of: module = __import__('module_name.submodule') Of course, this doesn't work; you just get module_name again. You have to do: module = __import__('module_name.submodule', fromlist=['blah']) Why? The actual value of fromlist don't seem to matter at all, as long as it's non-empty. What is the point of requiring an argument, then ignoring its values? Most stuff in Python seems to be done for good reason, but for the life of me, I can't come up with any reasonable explanation for this behavior to exist.

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  • How do I use HTML5's localStorage in a Google Chrome extension?

    - by davidkennedy85
    I am trying to develop an extension that will work with Awesome New Tab Page. I've followed the author's advice to the letter, but it doesn't seem like any of the script I add to my background page is being executed at all. Here's my background page: <script> var info = { poke: 1, width: 1, height: 1, path: "widget.html" } chrome.extension.onRequestExternal.addListener(function(request, sender, sendResponse) { if (request === "mgmiemnjjchgkmgbeljfocdjjnpjnmcg-poke") { chrome.extension.sendRequest( sender.id, { head: "mgmiemnjjchgkmgbeljfocdjjnpjnmcg-pokeback", body: info, } ); } }); function initSelectedTab() { localStorage.setItem("selectedTab", "Something"); } initSelectedTab(); </script> Here is manifest.json: { "update_url": "http://clients2.google.com/service/update2/crx", "background_page": "background.html", "name": "Test Widget", "description": "Test widget for mgmiemnjjchgkmgbeljfocdjjnpjnmcg.", "icons": { "128": "icon.png" }, "version": "0.0.1" } Here is the relevant part of widget.html: <script> var selectedTab = localStorage.getItem("selectedTab"); document.write(selectedTab); </script> Every time, the browser just displays null. The local storage isn't being set at all, which makes me think the background page is completely disconnected. Do I have something wired up incorrectly?

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  • Is it possible to give a python dict an initial capacity (and is it usefull)

    - by Peter Smit
    I am filling a python dict with around 10,000,000 items. My understanding of dict (or hashtables) is that when too much elements get in them, the need to resize, an operation that cost quite some time. Is there a way to say to a python dict that you will be storing at least n items in it, so that it can allocate memory from the start? Or will this optimization not do any good to my running speed? (And no, I have not checked that the slowness of my small script is because of this, I actually wouldn't now how to do that. This is however something I would do in Java, set the initial capacity of the HashSet right)

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  • Python, implementing proxy support for a socket based application (not urllib2)

    - by Terry Felkrow
    Hey guys, I am little stumped: I have a simple messenger client program (pure python, sockets), and I wanted to add proxy support (http/s, socks), however I am a little confused on how to go about it. I am assuming that the connection on the socket level will be done to the proxy server, at which point the headers should contain a CONNECT + destination IP (of the chat server) and authentication, (if proxy requires so), however the rest is a little beyond me. How is the subsequent connection handled, specifically the reading/writing, etc... Are there any guides on proxy support implementation for socket based (tcp) programming in Python? Thank you

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  • iPhone App Store Distribution questions

    - by Johannes Jensen
    I would like to enroll my company in to the iPhone Developer Program for $99. I have a few questions, which I can't really find an answer to, because Apple aren't very detailed in their pages unless you actually registered. So here goes: 1.) Is the $99 paid yearly? 2.) It says when distributing free apps there's no fee, but if I want to distribute a $0.99 app, what is the fee then? Is it huge? Or..? 3.) Can I keep track of how many people bought my app anytime? 4.) Is there a page on the internet where I can read more about app store distribution that explains almost all the info I need to know? (Apple doesn't satisfy me on this) Thanks

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  • Python IPC, popen too slow

    - by UnableToLoad
    i need to run a subprocess (./myProgram) form python script and get output, actually i do this: import subprocess proc = subprocess.Popen('./generate_out', shell=False, stdout=subprocess.PIPE, ) while proc.poll() is None: out = proc.stdout.readline() data = doStuff(out) print(data) but is slow, sometimes pass a lot of time between the output produced by ./generate_out and the print(data), knowing that my doStuff() function is very fast, i think there is some buffer slowing down my pipe... Notes: ./generate_out, generates potentially an unlimited number of lines of finite length each. It seems that when too few chars are put in the pipe between the two processes nothing happens, then when enough is produced i get a huge print (non the expected behaviour!) sometimes i wait many seconds (10-20 and more) between generate_out print and python print) what can i do? maybe communicate() is faster? anithing else? Thank you a lot!

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  • Embedding Python in C: Having problems importin local modules

    - by Drew
    I'm needing to run Python scripts within a C-based app. I am able to import standard modules from the Python libraries i.e.: PyRun_SimpleString("import sys") But when I try to import a local module 'can' PyRun_SimpleString("import can") returns the error msg: Traceback (most recent call last): File "", line 1, in ImportError: No module named can When I type the command "import can" in iPython, the system is able to find it. How can I link my app with can? I've tried setting PYTHONPATH to my working directory. Thanks.

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  • Python in AWS Elastic Beasntalk: Private package dependencies

    - by Adam Matan
    I would like to deploy a Python Flask application on beanstalk. The application depends on external packages (e.g. geopy) and internal packages (e.g. adam_geography). The manual Create a requirements.txt file and place it in the top-level directory of your source bundle. This would probably fetch geopy and its dependencies, but would not fetch adam_geography which is available from a custom repo inside my VPC. How do I specify/upload private, internal Python package dependencies in a Beanstalk application?

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  • Wrap app with dynamic libraries into one large static app

    - by progo
    I have an old program that kind of depends on older dynamic libraries. They tend to get upgraded easily with distro's updates. I figured that there would be a script with using ldd that would gather the libs needed and create one bigger, statically linked application that wouldn't break so easily. If I could do this, alot of older KDE libraries could be removed from my system and easen my life. Thanks!

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  • Creating Instance of Python Extension Type in C

    - by Brad Zeis
    I am writing a simple Vector implementation as a Python extension module in C that looks mostly like this: typedef struct { PyObject_HEAD double x; double y; } Vector; static PyTypeObject Vector_Type = { ... }; It is very simple to create instances of Vector while calling from Python, but I need to create a Vector instance in the same extension module. I looked in the documentation but I couldn't find a clear answer. What's the best way to do this?

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  • Read -> change -> save. Thread safe.

    - by Pavel Alexeev
    This code should automatically connect players when they enter a game. But the problem is when two users try to connect at the same time - in this case 2nd user can easily overwrite changes made by 1st user ('room_1' variable). How could I make it thread safe? def join(userId): users = memcache.get('room_1') users.append(userId) memcache.set('room_1', users) return users I'm using Google App Engine (python) and going to implement simple game-server for exchanging peers given by Adobe Stratus.

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  • Google Chrome no longer treats " Web Apps" specially

    - by Adrian Petrescu
    I'm running Google Chrome (Dev Channel), with the --enable-apps flag, in both OSX and Ubuntu. I have four or five WebApps installed, and they appear in the "New Tab" page just fine. The problem is that, before, when the feature first became available in the Dev Channel, the actual tabs hosting the webapps received special treatment; they would have 3D Dock-like look, and (more importantly) the tab bar would be hidden while using that tab. Sometime in the last few weeks, however, it seems that the special treatment just disappeared with one of the daily updates. The webapps still show up in the New Tab page, they still work in the sense that they capture all URLs going to that webapp, and they use the right icons; but they've basically become indistinguishable from just a regularly pinned tab. The two special features mentioned above have disappeared, on both Ubuntu and OS X. My questions are simply: a) Does this happen to anyone else? When exactly did it begin? b) Why did Google regress the feature? c) Is there any flag I can enable to get it back?

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  • [SOLVED]Port C's fread(&struct,....) to Python

    - by user287669
    Hey, I'm really struggling with this one. I'am trying to port a small piece of someone else's code to Python and this is what I have: typedef struct { uint8_t Y[LUMA_HEIGHT][LUMA_WIDTH]; uint8_t Cb[CHROMA_HEIGHT][CHROMA_WIDTH]; uint8_t Cr[CHROMA_HEIGHT][CHROMA_WIDTH]; } __attribute__((__packed__)) frame_t; frame_t frame; while (! feof(stdin)) { fread(&frame, 1, sizeof(frame), stdin); // DO SOME STUFF } Later I need to access the data like so: frame.Y[x][y] So I made a Class 'frame' in Python and inserted the corresponding variables(frame.Y, frame.Cb, frame.Cr). I have tried to sequentially map the data from Y[0][0] to Cr[MAX][MAX], even printed out the C struct in action but didn't manage to wrap my head around the method used to put the data in there. I've been struggling overnight with this and have to get back to the army tonight, so any immediate help is very welcome and appreciated. Thanks

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  • Doxygen C++ comment string parser in python?

    - by Sebastian
    Does anybody know of a python module to parse a doxygen style C++ comment string? I mean a string like this (simple example): /** * A constructor. * A more elaborate description of the constructor. * @param param1 test1 * @param param2 test2 */ and I would like to extract the brief, the long description, the parameters, the return value etc. I'm currently doing this using string methods and regular expressions but my solution is not very robust. Alternatively can anybody recommend an easy to use python parser lib that I can set up quickly? Thanks in advance

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  • how to load a module within python debugger

    - by MK
    This looks like something simple but I could not find the answer so far - I have just learnt python and need to start learning pdb. In my module I have the usual if __name__ == __main_ trick to execute some code when the module is run as a program. So far I have been running it via python -m mymod arg1 arg2 syntax Now I want to do exactly the same thing from inside pdb. Normally in C, I would just do gdb mybinary followed by run arg1 arg2 But I cannot figure out how to achieve the same thing in pdb. I am sure there has to be a simple way to achieve this but it is taking me too long to search for it.. Thanks for your help!

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  • python streaming TCP server with RPC

    - by Noah
    I have written a little streaming mp3 server in python. So far all it does is accept a ServerSocket connection, and begin streaming all mp3 data in its queue to the request using socket.send(). I have implemented this to chunk in stream icy metadata, so the name of the playing song shows up in the client. I would like to add playlist management to the server, so that I can manipulate the playlist of the running server. I have a vague idea that xmlrpclib would be suited to doing this, but I'm confused about one thing: When I start the server it listens on port N. The python xmlrpclib examples involve creating a socket and listening for requests. So my question is should server listen on two ports; i.e., one for streaming client requests and one for xmlrpclib calls, or is there a way to do it by somehow delegating the request to the appropriate handler based on its type?

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  • Installing mySQL on mac for use with python

    - by Paul Patterson
    I am aware that there are umpteen similar questions here, and on other forums, but none of them have been able to help me. I simply want to install mySQL on my mac (running snow leopard 10.6.5) for use with Python. So far I have: 1) downloaded and installed [mysql-5.5.8-osx10.6-x86_64.dmg] (I have also accidentally downloaded and installed [mysql-5.1.54-osx10.6-x86_64.dmg]) 2) downloaded and installed [mySQL-python-1.2.3] 3) added the following to my .bash_profile: [export PATH=$PATH:/usr/local/mysql/bin] but when i run:import mySQLdb in terminal I am met with the following message: Traceback (most recent call last): File "<stdin>", line 1, in <module> ImportError: No module named mySQLdb Can anyone help?

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