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  • Where is my python script spending time? Is there "missing time" in my cprofile / pstats trace?

    - by fmark
    I am attempting to profile a long running python script. The script does some spatial analysis on raster GIS data set using the gdal module. The script currently uses three files, the main script which loops over the raster pixels called find_pixel_pairs.py, a simple cache in lrucache.py and some misc classes in utils.py. I have profiled the code on a moderate sized dataset. pstats returns: p.sort_stats('cumulative').print_stats(20) Thu May 6 19:16:50 2010 phes.profile 355483738 function calls in 11644.421 CPU seconds Ordered by: cumulative time List reduced from 86 to 20 due to restriction <20> ncalls tottime percall cumtime percall filename:lineno(function) 1 0.008 0.008 11644.421 11644.421 <string>:1(<module>) 1 11064.926 11064.926 11644.413 11644.413 find_pixel_pairs.py:49(phes) 340135349 544.143 0.000 572.481 0.000 utils.py:173(extent_iterator) 8831020 18.492 0.000 18.492 0.000 {range} 231922 3.414 0.000 8.128 0.000 utils.py:152(get_block_in_bands) 142739 1.303 0.000 4.173 0.000 utils.py:97(search_extent_rect) 745181 1.936 0.000 2.500 0.000 find_pixel_pairs.py:40(is_no_data) 285478 1.801 0.000 2.271 0.000 utils.py:98(intify) 231922 1.198 0.000 2.013 0.000 utils.py:116(block_to_pixel_extent) 695766 1.990 0.000 1.990 0.000 lrucache.py:42(get) 1213166 1.265 0.000 1.265 0.000 {min} 1031737 1.034 0.000 1.034 0.000 {isinstance} 142740 0.563 0.000 0.909 0.000 utils.py:122(find_block_extent) 463844 0.611 0.000 0.611 0.000 utils.py:112(block_to_pixel_coord) 745274 0.565 0.000 0.565 0.000 {method 'append' of 'list' objects} 285478 0.346 0.000 0.346 0.000 {max} 285480 0.346 0.000 0.346 0.000 utils.py:109(pixel_coord_to_block_coord) 324 0.002 0.000 0.188 0.001 utils.py:27(__init__) 324 0.016 0.000 0.186 0.001 gdal.py:848(ReadAsArray) 1 0.000 0.000 0.160 0.160 utils.py:50(__init__) The top two calls contain the main loop - the entire analyis. The remaining calls sum to less than 625 of the 11644 seconds. Where are the remaining 11,000 seconds spent? Is it all within the main loop of find_pixel_pairs.py? If so, can I find out which lines of code are taking most of the time?

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  • How to speed up the reading of innerHTML in IE8?

    - by Dennis Cheung
    I am using JQuery with the DataTable plugin, and now I have a big performnce issue on the following line. aLocalData[jInner] = nTds[j].innerHTML; // jquery.dataTables.js:2220 I have a ajax call, and result string in HTML format. I convert them into HTML nodes, and that part is ok. var $result = $('<div/>').html(result).find("*:first"); // simlar to $result=$(result) but much more faster in Fx Then I activate enable the result from a plain table to a sortable datatable. The speed is acceptable in Fx (around 4sec for 900 rows), but unacceptable in IE8 (more then 100 seconds). I check it deep using the buildin profiler, and found the above single line take all 99.9% of the time, how can I speed it up? anything I missed? nTrs = oSettings.nTable.getElementsByTagName('tbody')[0].childNodes; for ( i=0, iLen=nTrs.length ; i<iLen ; i++ ) { if ( nTrs[i].nodeName == "TR" ) { iThisIndex = oSettings.aoData.length; oSettings.aoData.push( { "nTr": nTrs[i], "_iId": oSettings.iNextId++, "_aData": [], "_anHidden": [], "_sRowStripe": '' } ); oSettings.aiDisplayMaster.push( iThisIndex ); aLocalData = oSettings.aoData[iThisIndex]._aData; nTds = nTrs[i].childNodes; jInner = 0; for ( j=0, jLen=nTds.length ; j<jLen ; j++ ) { if ( nTds[j].nodeName == "TD" ) { aLocalData[jInner] = nTds[j].innerHTML; // jquery.dataTables.js:2220 jInner++; } } } }

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  • Will more CPUs/cores help with VS.NET build times?

    - by LoveMeSomeCode
    I was wondering if anyone knew whether Visual Studio .NET had a parallel build process or not? I have a solution with lots of projects, every project has lots of markup/code, lots of types, etc. Just sitting there with intellisense on runs it up to about 700MB. But the build times are really slow and only seem to max out one of my two cpu cores. Does this mean the build process is single threaded? My solution's build dependency chain isn't linear, so I don't see why it couldn't be building some of the projects in parallel. I remember Joel Spolsky blogging about his new SSD, and how it didn't help with compile times, but he didn't mention which compiler he was using. We're using VS 2005. Anyone know how it's compilation works? And is it any different/better in 2008/2010?

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  • SQL Server Multiple Joins Are Taxing The CPU

    - by durilai
    I have a stored procedure on SQL Server 2005. It is pulling from a Table function, and has two joins. When the query is run using a load test it kills the CPU 100% across all 16 cores! I have determined that removing one of the joins makes the query run fine, but both taxes the CPU. Select SKey From dbo.tfnGetLatest(@ID) a left join [STAGING].dbo.RefSrvc b on a.LID = b.ESIID left join [STAGING].dbo.RefSrvc c on a.EID = c.ESIID Any help is appreciated, note the join is happening on the same table in a different database on the same server.

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  • Optimizing MySql query to avoid using "Using filesort"

    - by usef_ksa
    I need your help to optimize the query to avoid using "Using filesort".The job of the query is to select all the articles that belongs to specific tag. The query is: "select title from tag,article where tag='Riyad' AND tag.article_id=article.id order by tag.article_id". the tables structure are the following: Tag table CREATE TABLE `tag` ( `tag` VARCHAR( 30 ) NOT NULL , `article_id` INT NOT NULL , INDEX ( `tag` ) ) ENGINE = MYISAM ; Article table CREATE TABLE `article` ( `id` INT NOT NULL AUTO_INCREMENT PRIMARY KEY , `title` VARCHAR( 60 ) NOT NULL ) ENGINE = MYISAM Sample data INSERT INTO `article` VALUES (1, 'About Riyad'); INSERT INTO `article` VALUES (2, 'About Newyork'); INSERT INTO `article` VALUES (3, 'About Paris'); INSERT INTO `article` VALUES (4, 'About London'); INSERT INTO `tag` VALUES ('Riyad', 1); INSERT INTO `tag` VALUES ('Saudia', 1); INSERT INTO `tag` VALUES ('Newyork', 2); INSERT INTO `tag` VALUES ('USA', 2); INSERT INTO `tag` VALUES ('Paris', 3); INSERT INTO `tag` VALUES ('France', 3);

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  • SQL Overlapping and Multi-Column Indexes

    - by durilai
    I am attempting to tune some stored procedures and have a question on indexes. I have used the tuning advisor and they recommended two indexes, both for the same table. The issue is one index is for one column and the other is for multiple columns, of which it includes the same column from the first. My question is why and what is the difference? CREATE NONCLUSTERED INDEX [_dta_index_Table1_5_2079723603__K23_K17_K13_K12_K2_K10_K22_K14_K19_K20_K9_K11_5_6_7_15_18] ON [dbo].[Table1] ( [EfctvEndDate] ASC, [StuLangCodeKey] ASC, [StuBirCntryCodeKey] ASC, [StuBirStOrProvncCodeKey] ASC, [StuKey] ASC, [GndrCodeKey] ASC, [EfctvStartDate] ASC, [StuHspncEnctyIndctr] ASC, [StuEnctyMsngIndctr] ASC, [StuRaceMsngIndctr] ASC, [StuBirDate] ASC, [StuBirCityName] ASC ) INCLUDE ( [StuFstNameLgl], [StuLastOrSrnmLgl], [StuMdlNameLgl], [StuIneligSnorImgrntIndctr], [StuExpctdGrdtngClYear] ) WITH (SORT_IN_TEMPDB = OFF, IGNORE_DUP_KEY = OFF, DROP_EXISTING = OFF, ONLINE = OFF) ON [PRIMARY] go CREATE NONCLUSTERED INDEX [_dta_index_Table1_5_2079723603__K23] ON [dbo].[Table1] ( [EfctvEndDate] ASC )WITH (SORT_IN_TEMPDB = OFF, IGNORE_DUP_KEY = OFF, DROP_EXISTING = OFF, ONLINE = OFF) ON [PRIMARY]

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  • Combine static files or load in parallel

    - by Niall Collins
    I am at present introducing code to my site to combine css and javascript files. Is there a way without having to include an external library to load javascript asynchronously or in parallel? I have read on some blogs that combining of files can be counter productive as the load of the http request can be large and its better to load multiple files in parallel. Opinions on this? I am caching my javascript/css. And would have thought it was better to combine rather than have multiple http requests.

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  • XDocument holding onto Memory?

    - by Jon
    I have an appplication that does a XDocument.Load from a 20mb file and then gets passed to a form to view its contents: openFileDialog1.FileName = ""; if (openFileDialog1.ShowDialog() == DialogResult.OK) { AuditFile = XDocument.Load(openFileDialog1.FileName); fmAuditLogViewer AuditViewer = new fmAuditLogViewer(); AuditViewer.ReportDocument = AuditFile; AuditViewer.Init(); AuditViewer.ShowDialog(); AuditViewer.Dispose(); AuditFile.RemoveNodes(); AuditFile = null; } In Task Manager I can see the memory being used by my application shoot up when I open this file. When I have finished viewing this file in my application I call : myXDocument.RemoveNodes(); myXDocument = null; However the memory use in Task Manager is still pretty high against my app. Is the XDocument still being held in memory and can I decrease the memory usage by my app?

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  • How to calculate real-time stats?

    - by Diego Jancic
    I have a site with millions of users (well, actually it doesn't have any yet, but let's imagine), and I want to calculate some stats like "log-ins in the past hour". The problem is similar to the one described here: http://highscalability.com/blog/2008/4/19/how-to-build-a-real-time-analytics-system.html The simplest approach would be to do a select like this: select count(distinct user_id) from logs where date>='20120601 1200' and date <='20120601 1300' (of course other conditions could apply for the stats, like log-ins per country) Of course this would be really slow, mainly if it has millions (or even thousands) of rows, and I want to query this every time a page is displayed. How would you summarize the data? What should go to the (mem)cache? EDIT: I'm looking for a way to de-normalize the data, or to keep the cache up-to-date. For example I could increment an in-memory variable every time someone logs in, but that would help to know the total amount of logins, not the "logins in the last hour". Hope it's more clear now.

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  • Server Benchmarking: What tools to use with my real-world test data

    - by mdemmitt
    I want to benchmark a new server using historical HTTP-request data. I have a textfile that contains one day's worth of real historical requests to a production server. What is the best tool for sending that list of requests on the server I'm testing? The tool I use should be able to configure the following: Number of threads making the requests Number of requests/second sent A list of request URLs to use when making the requests. Apache Bench seems like a close fit. However, Bench does not seem to be able to take in a list of request URLs as a parameter. What would you recommend?

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  • Showing response time in a rails app.

    - by anshul
    I want to display a This page took x seconds widget at the bottom of every page in my rails application. I would like x to reflect the approximate amount of time the request spent on my server. What is the usual way this is done in Rails?

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  • Flash causing jerky javascript animations

    - by Matt Brailsford
    Hi Guys, I'm developing a site which has a flash background playing a small video loop scaled to fill the whole background. Over the top I have a number of HTML elements which are animated using javascript. The problem I am having is that (predominantly in FF, but also in others to a lesser degree) the flash seems to be causing my javascript animations to run rather jerky, and in some cases missing the animation altogether and just jumping to the end state. Does anybody have any thoughts on how to make the 2 work together nicely? Many thanks Matt

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  • Writing a DBMS in Python

    - by Matt Luongo
    Hey guys, I'm working on a basic DBMS as a pet project and planning to prototype in Python. I figure there's a reason there are only a few Python databases, and my gut agrees that my favorite language will be too slow to act as an honest performing database, but I'm looking forward to using it to learn what I need quickly. Would someone please contradict me? Is Python as ill-suited right now for this sort of thing as I think?

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  • SQL Server Mutliple Joins Taxing CPU

    - by durilai
    I have a stored procedure on SQL server 2005. It is pulling from a Table function, and has two joins. When the query is run using a load test it kills the CPU 100% across all 16 cores! I have determined that removing one of the joins makes the query run fine, but both taxes the CPU. Select SKey From dbo.tfnGetLatest(@ID) a left join [STAGING].dbo.RefSrvc b on a.LID = b.ESIID left join [STAGING].dbo.RefSrvc c on a.EID = c.ESIID Any help is appreciated, note the join is happening on the same table in a different database on the same server.

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  • iPhone - Get a pointer to the data behind CGDataProvider?

    - by jtrim
    I'm trying to take a CGImage and copy its data into a buffer for later processing. The code below is what I have so far, but there's one thing I don't like about it - it's copying the image data twice. Once for CGDataProviderCopyData() and once for the :getBytes:length call on imgData. I haven't been able to find a way to copy the image data directly into my buffer and cut out the CGDataProviderCopyData() step, but there has to be a way...any pointers? (...pun ftw) NSData *imgData = (NSData *)(CGDataProviderCopyData(CGImageGetDataProvider(myCGImageRef))); CGImageRelease(myCGImageRef); // i've got a previously-defined pointer to an available buffer called "mybuff" [imgData getBytes:mybuff length:[imgData length]];

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  • Web Page execution

    - by Sweta Jha
    I have a web page which brings 13K+ records in 20 seconds. There is a menu on the page, clicking on which navigates me to another page which is very lightweight. Displaying the data (13K+) took only 20 seconds whereas navigating from that page took much longer, more than 2 mins. Can you tell me why is the latter taking so much of time. I've stopped the page_load code execution on click of the menu. I've disabled the viewstate for that page as well.

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  • What's the difference between reflow and repaint?

    - by Jon Raasch
    I'm a little unclear on the difference between reflow + repaint (if there's any difference at all) Seems like reflow might be shifting the position of various DOM elements, where repaint is just rendering a new object. E.g. reflow would occur when removing an element and repaint would occur when changing its color. Is this true?

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  • What are the internal limits to WCF

    - by ligos
    WCF has lots of limits imposed on it to protect against DoS attacks and other developer brainlessness. What are these limits? And how can they be overriden? Specifically, if I was to try to send a large number of messages in a short period of time to a variety of different clients, what are the internal WCF limits they may cause messages to be sent slowly. PS: this question is a much shorter version of my previous question that did not get much attention. EDIT I have answered the original question. The issue being my async calls were being turned into synchronous ones.

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  • Explanation for expires header

    - by sushil bharwani
    I have a joomla application working on Apache.To improve site performace we have written a .htaccess file to root of the application with setting a far future expires header to all the static content. As desired first time the files load in fresh with 200 status code. when again click on the same link many of the files are served directly from cache. I need explanation for two things When i press f5 then a number of files load with 304 status code however i expected them to be coming directly from cache without hitting the server for a status header? When i close the browser and come back to the same page again i see the same thing happening a number of files load with 304 status code although i thought they will load directly from the browser cache? I understand that 304 also servs file from browser cache but i want to avoid the header communication between servers as my static files wont ever change. Also i want to add that my requests are over a https connection does that create any issue.

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  • Optimizing MySQL for ALTER TABLE of InnoDB

    - by schuilr
    Sometime soon we will need to make schema changes to our production database. We need to minimize downtime for this effort, however, the ALTER TABLE statements are going to run for quite a while. Our largest tables have 150 million records, largest table file is 50G. All tables are InnoDB, and it was set up as one big data file (instead of a file-per-table). We're running MySQL 5.0.46 on an 8 core machine, 16G memory and a RAID10 config. I have some experience with MySQL tuning, but this usually focusses on reads or writes from multiple clients. There is lots of info to be found on the Internet on this subject, however, there seems to be very little information available on best practices for (temporarily) tuning your MySQL server to speed up ALTER TABLE on InnoDB tables, or for INSERT INTO .. SELECT FROM (we will probably use this instead of ALTER TABLE to have some more opportunities to speed things up a bit). The schema changes we are planning to do is adding a integer column to all tables and make it the primary key, instead of the current primary key. We need to keep the 'old' column as well so overwriting the existing values is not an option. What would be the ideal settings to get this task done as quick as possible?

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  • Problem measuring N times the execution time of a code block

    - by Nazgulled
    EDIT: I just found my problem after writing this long post explaining every little detail... If someone can give me a good answer on what I'm doing wrong and how can I get the execution time in seconds (using a float with 5 decimal places or so), I'll mark that as accepted. Hint: The problem was on how I interpreted the clock_getttime() man page. Hi, Let's say I have a function named myOperation that I need to measure the execution time of. To measure it, I'm using clock_gettime() as it was recommend here in one of the comments. My teacher recommends us to measure it N times so we can get an average, standard deviation and median for the final report. He also recommends us to execute myOperation M times instead of just one. If myOperation is a very fast operation, measuring it M times allow us to get a sense of the "real time" it takes; cause the clock being used might not have the required precision to measure such operation. So, execution myOperation only one time or M times really depends if the operation itself takes long enough for the clock precision we are using. I'm having trouble dealing with that M times execution. Increasing M decreases (a lot) the final average value. Which doesn't make sense to me. It's like this, on average you take 3 to 5 seconds to travel from point A to B. But then you go from A to B and back to A 5 times (which makes it 10 times, cause A to B is the same as B to A) and you measure that. Than you divide by 10, the average you get is supposed to be the same average you take traveling from point A to B, which is 3 to 5 seconds. This is what I want my code to do, but it's not working. If I keep increasing the number of times I go from A to B and back A, the average will be lower and lower each time, it makes no sense to me. Enough theory, here's my code: #include <stdio.h> #include <time.h> #define MEASUREMENTS 1 #define OPERATIONS 1 typedef struct timespec TimeClock; TimeClock diffTimeClock(TimeClock start, TimeClock end) { TimeClock aux; if((end.tv_nsec - start.tv_nsec) < 0) { aux.tv_sec = end.tv_sec - start.tv_sec - 1; aux.tv_nsec = 1E9 + end.tv_nsec - start.tv_nsec; } else { aux.tv_sec = end.tv_sec - start.tv_sec; aux.tv_nsec = end.tv_nsec - start.tv_nsec; } return aux; } int main(void) { TimeClock sTime, eTime, dTime; int i, j; for(i = 0; i < MEASUREMENTS; i++) { printf(" » MEASURE %02d\n", i+1); clock_gettime(CLOCK_REALTIME, &sTime); for(j = 0; j < OPERATIONS; j++) { myOperation(); } clock_gettime(CLOCK_REALTIME, &eTime); dTime = diffTimeClock(sTime, eTime); printf(" - NSEC (TOTAL): %ld\n", dTime.tv_nsec); printf(" - NSEC (OP): %ld\n\n", dTime.tv_nsec / OPERATIONS); } return 0; } Notes: The above diffTimeClock function is from this blog post. I replaced my real operation with myOperation() because it doesn't make any sense to post my real functions as I would have to post long blocks of code, you can easily code a myOperation() with whatever you like to compile the code if you wish. As you can see, OPERATIONS = 1 and the results are: » MEASURE 01 - NSEC (TOTAL): 27456580 - NSEC (OP): 27456580 For OPERATIONS = 100 the results are: » MEASURE 01 - NSEC (TOTAL): 218929736 - NSEC (OP): 2189297 For OPERATIONS = 1000 the results are: » MEASURE 01 - NSEC (TOTAL): 862834890 - NSEC (OP): 862834 For OPERATIONS = 10000 the results are: » MEASURE 01 - NSEC (TOTAL): 574133641 - NSEC (OP): 57413 Now, I'm not a math wiz, far from it actually, but this doesn't make any sense to me whatsoever. I've already talked about this with a friend that's on this project with me and he also can't understand the differences. I don't understand why the value is getting lower and lower when I increase OPERATIONS. The operation itself should take the same time (on average of course, not the exact same time), no matter how many times I execute it. You could tell me that that actually depends on the operation itself, the data being read and that some data could already be in the cache and bla bla, but I don't think that's the problem. In my case, myOperation is reading 5000 lines of text from an CSV file, separating the values by ; and inserting those values into a data structure. For each iteration, I'm destroying the data structure and initializing it again. Now that I think of it, I also that think that there's a problem measuring time with clock_gettime(), maybe I'm not using it right. I mean, look at the last example, where OPERATIONS = 10000. The total time it took was 574133641ns, which would be roughly 0,5s; that's impossible, it took a couple of minutes as I couldn't stand looking at the screen waiting and went to eat something.

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  • Mysql: Perform of NOT EXISTS. Is it possible to improve permofance?

    - by petRUShka
    I have two tables posts and comments. Table comments have post_id attribute. I need to get all posts with type "open", for which there are no comments with type "good" and created date MAY 1. Is it optimal to use such SQL-query: SELECT posts.* FROM posts WHERE NOT EXISTS ( SELECT comments.id FROM comments WHERE comments.post_id = posts.id AND comments.comment_type = 'good' AND comments.created_at BETWEEN '2010-05-01 00:00:00' AND '2010-05-01 23:59:59') I'm not sure that NOT EXISTS is perfect construction in this situation.

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  • How can "set timestamp" be a slow query?

    - by Peder
    My slow query log is full of entries like the following # Query_time: 1.016361 Lock_time: 0.000000 Rows_sent: 0 Rows_examined: 0 SET timestamp=1273826821; COMMIT; I guess the set timestamp command is issued by replication but I don't understand how set timestamp can take over a second. Any ideas?

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