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  • Memory problems while code is running (Python, Networkx)

    - by MIN SU PARK
    I made a code for generate a graph with 379613734 edges. But the code couldn't be finished because of memory. It takes about 97% of server memory when it go through 62 million lines. So I killed it. Do you have any idea to solve this problem? My code is like this: import os, sys import time import networkx as nx G = nx.Graph() ptime = time.time() j = 1 for line in open("./US_Health_Links.txt", 'r'): #for line in open("./test_network.txt", 'r'): follower = line.strip().split()[0] followee = line.strip().split()[1] G.add_edge(follower, followee) if j%1000000 == 0: print j*1.0/1000000, "million lines done", time.time() - ptime ptime = time.time() j += 1 DG = G.to_directed() # P = nx.path_graph(DG) Nn_G = G.number_of_nodes() N_CC = nx.number_connected_components(G) LCC = nx.connected_component_subgraphs(G)[0] n_LCC = LCC.nodes() Nn_LCC = LCC.number_of_nodes() inDegree = DG.in_degree() outDegree = DG.out_degree() Density = nx.density(G) # Diameter = nx.diameter(G) # Centrality = nx.betweenness_centrality(PDG, normalized=True, weighted_edges=False) # Clustering = nx.average_clustering(G) print "number of nodes in G\t" + str(Nn_G) + '\n' + "number of CC in G\t" + str(N_CC) + '\n' + "number of nodes in LCC\t" + str(Nn_LCC) + '\n' + "Density of G\t" + str(Density) + '\n' # sys.exit() # j += 1 The edge data is like this: 1000 1001 1000245 1020191 1000 10267352 1000653 10957902 1000 11039092 1000 1118691 10346 11882 1000 1228281 1000 1247041 1000 12965332 121340 13027572 1000 13075072 1000 13183162 1000 13250162 1214 13326292 1000 13452672 1000 13844892 1000 14061830 12340 1406481 1000 14134703 1000 14216951 1000 14254402 12134 14258044 1000 14270791 1000 14278978 12134 14313332 1000 14392970 1000 14441172 1000 14497568 1000 14502775 1000 14595635 1000 14620544 1000 14632615 10234 14680596 1000 14956164 10230 14998341 112000 15132211 1000 15145450 100 15285998 1000 15288974 1000 15300187 1000 1532061 1000 15326300 Lastly, is there anybody who has an experience to analyze Twitter link data? It's quite hard to me to take a directed graph and calculate average/median indegree and outdegree of nodes. Any help or idea?

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  • Python alignment of assignments (style)

    - by ikaros45
    I really like following style standards, as those specified in PEP 8. I have a linter that checks it automatically, and definitely my code is much better because of that. There is just one point in PEP 8, the E251 & E221 don't feel very good. Coming from a JavaScript background, I used to align the variable assignments as following: var var1 = 1234; var2 = 54; longer_name = 'hi'; var lol = { 'that' : 65, 'those' : 87, 'other_thing' : true }; And in my humble opinion, this improves readability dramatically. Problem is, this is dis-recommended by PEP 8. With dictionaries, is not that bad because spaces are allowed after the colon: dictionary = { 'something': 98, 'some_other_thing': False } I can "live" with variable assignments without alignment, but what I don't like at all is not to be able to pass named arguments in a function call, like this: some_func(length= 40, weight= 900, lol= 'troll', useless_var= True, intelligence=None) So, what I end up doing is using a dictionary, as following: specs = { 'length': 40, 'weight': 900, 'lol': 'troll', 'useless_var': True, 'intelligence': None } some_func(**specs) or just simply some_func(**{'length': 40, 'weight': 900, 'lol': 'troll', 'useless_var': True, 'intelligence': None}) But I have the feeling this work around is just worse than ignoring the PEP 8 E251 / E221. What is the best practice?

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  • Nested generator functions in python

    - by Yuval A
    Consider a tuple v = (a,b,c) and a generator function generate(x) which receives an item from the tuple and generates several options for each item. What is the pythonic way of generating a set of all the possible combinations of the result of generate(x) on each item in the tuple? I could do this: v = (a,b,c) for d in generate(v[0]): for e in generate(v[1]): for f in generate(v[2]): print d,e,f but that's just ugly, plus I need a generic solution.

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  • Difference between 'Web Site' and 'Project' in Visual Studio

    - by Gudmundur Orn
    Duplicate http://stackoverflow.com/questions/344473/asp-net-website-or-web-application-project I have noticed that there is clearly a difference in what you get when you fire up Visual Studio 2008 and choose 'New Project' - 'ASP.NET Web Application' instead of 'New Web Site' - 'ASP.NET Web Site'. For example if you choose 'Project', then you can compile to .dll and each page gets a *.aspx.designer.cs codebehind file. 1) Why do we have these two different project types? 2) Which do you prefer? 3) Why would I choose one over the other? 4) What's the deal with the *.aspx.designer.cs files?

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  • wx Python is not properly drawing customtree items

    - by uberjumper
    Hi, I am currently using wx.CustomTree, to use to display a series of configuration settings. I generally fill them with wx.TextCtrl / wx.Combobox, to allow the user to edit / enter stuff. Here is my code: class ConfigTree(CT.CustomTreeCtrl): """ Holds all non gui drawing panel stuff """ def __init__(self, parent): CT.CustomTreeCtrl.__init__(self, parent, id = common.ID_CONTROL_SETTINGS, style = wx.TR_DEFAULT_STYLE | wx.TR_HAS_BUTTONS | wx.TR_HAS_VARIABLE_ROW_HEIGHT | wx.TR_SINGLE) #self.HideWindows() #self.RefreshSubtree(self.root) self.population_size_ctrl = None self.SetSizeHints(350, common.FRAME_SIZE[1]) self.root = self.AddRoot("Configuration Settings") child = self.AppendItem(self.root, "Foo", wnd=wx.TextCtrl(self, wx.ID_ANY, "Lots Of Muffins")) The problem is, any children nodes, the data for these nodes is not filled in. When i basically expand the configuration settings tree node. I see the "Foo" node, however the textbox is empty. This is the same for both text node, Until i actually click on the child node. I've looked tried every form of update / etc. Does anyone have any ideas?

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  • python multithreading for dummies

    - by albruno
    trying to find a simple example that clearly shows a single task being divided for multi-threading. Quite frankly... many of the examples are overly sophisticated thus.... making the flow tougher to play with... anyone care to share their breakthrough sample or point to an example? As well, what is the best docs? many google lookups are too specific (for me at this stage) Thanks in advance.

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  • Regex optional match in python fails

    - by AaronG
    tickettypepat = (r'MIS Notes:.**(//p//)?.**') retype = re.search(tickettypepat,line) if retype: print retype.group(0) print retype.group(1) Given the input. MIS Notes: //p// Can anyone tell me why group(0) is MIS Notes: //p// and group(1) is returning as None?

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  • Retrieving text from password field [python][pyqt4]

    - by Dr. Johnson
    def welcomeStage (self): self.test = QtGui.QLineEdit (self) self.test.move (50, 150) QtCore.QObject.connect (self.test, QtCore.SIGNAL ('returnPressed()'), self.passwordStage) def passwordStage (self): self.email = self.test.text() self.test.clear() self.test.setEchoMode (QtGui.QLineEdit.Password) QtCore.QObject.connect (self.test, QtCore.SIGNAL ('returnPressed()'), self.loginStage) def loginStage (self): self.pwd = self.test.text() print self.pwd if len (self.pwd) < 0: welcomeStage () return Simply put, I am making a login form. The user enters their email, then the text field is cleared and echo mode is set to Password mode. The text() function returns the email fine, but when I call text() after I have changed the echo mode, it returns 0. I've been pouring over the documentation looking for anything regarding the text() function and how it operates when Password mode is on, however I have not found anything. Does anybody know how this is done?

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  • FIFO dequeueing in python?

    - by Aaron Ramsey
    hello again everybody— I'm looking to make a functional (not necessarily optimally efficient, as I'm very new to programming) FIFO queue, and am having trouble with my dequeueing. My code looks like this: class QueueNode: def __init__(self, data): self.data = data self.next = None def __str__(self): return str(self.data) class Queue: def__init__(self): self.front = None self.rear = None self.size = 0 def enqueue(self, item) newnode = QueueNode(item) newnode.next = None if self.size == 0: self.front = self.rear = newnode else: self.rear = newnode self.rear.next = newnode.next self.size = self.size+1 def dequeue(self) dequeued = self.front.data del self.front self.size = self.size-1 if self.size == 0: self.rear = None print self.front #for testing if I do this, and dequeue an item, I get the error "AttributeError: Queue instance has no attribute 'front'." I guess my function doesn't properly assign the new front of the queue? I'm not sure how to fix it though. I don't really want to start from scratch, so if there's a tweak to my code that would work, I'd prefer that—I'm not trying to minimize runtime so much as just get a feel for classes and things of that nature. Thanks in advance for any help, you guys are the best.

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  • Sorting numbers in string format with Python

    - by prosseek
    I have a list that has some chapter numbers in string. When I sort the keys using keys function, it gives me wrong results. keys = ['1.1', '1.2', '2.1', '10.1'] keys.sort() print keys ['1.1', '1.2', '10.1', '2.1'] How can I use the sort function to get ['1.1', '1.2', '2.1', '10.1'] What if the array has something like this? ['1.1.1', '1.2.1', '10.1', '2.1'] - ['1.1.1','1.2.1','2.1','10.1']

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  • Remove certain keys from a dictionary in python

    - by Margaret
    I'm trying to construct a dictionary that contains a series of sets: {Field1:{Value1, Value2, Value3}, Field2{Value4}} The trouble is, I then wish to delete any fields from the dictionary that only have one value in the set. I have been writing code like this: for field in FieldSet: if len(FieldSet[field]) == 1: del(FieldSet[field]) But receive the error "RuntimeError: dictionary changed size during execution". (Not surprising, since that's what I'm doing.) It's not the be-all and end-all if I have to knock together some sort of workaround, but is it possible to do this?

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  • COM on Windows7 and Visual Studio

    - by vikasde
    I registered a COM dll (under administrator) using regsvr32, which I want to use in Visual Studio 2008 (under administrator) for my project in Windows 7. Now, when I try to use the interfaces and classes from the COM, then I can't see any of the methods. When I use the object browser to view the COM classes, then I can see that they are all empty. However when I use the same COM on windows XP using VS2008, then all methods are suddenly available. Does anybody know why this is happening and how to get this working under Windows 7?

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  • How to convert an HTML table to an array in python

    - by user345660
    I have an html document, and I want to pull the tables out of this document and return them as arrays. I'm picturing 2 functions, one that finds all the html tables in a document, and a second one that turns html tables into 2-dimensional arrays. Something like this: htmltables = get_tables(htmldocument) for table in htmltables: array=make_array(table) There's 2 catches: 1. The number tables varies day to day 2. The tables have all kinds of weird extra formatting, like bold and blink tags, randomly thrown in. Thanks!

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  • How to run & create a dll files.

    - by Gopal
    Using Visual Studio 2005 I download open source code from one site, when i try to run the source code, it showing error like Namespace & assembly references.... What are the procedure i have to do for this kind of errors.... And also i want to create a dll file by using this code. For Dll what are the procedure need to do? Need Help.

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  • Python: can't pickle module objects error

    - by adum
    i'm trying to pickle a big class and getting "TypeError: can't pickle module objects". despite looking around the web, i can't exactly figure out what this means. and i'm not sure which "module object" is causing the trouble. is there a way to find the culprit? the stack trace doesn't seem to indicate anything.

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  • how to get obj2.name via obj1.categories(), thanks (gae python)

    - by zjm1126
    i using google-app-engine webapp ,code is : class Post(db.Model): title = db.StringProperty(required=True) def categories(self): return (x.category for x in self.postcategory_set) class Category(db.Model): name = db.StringProperty() class PostCategory(db.Model): post = db.ReferenceProperty(Post) category = db.ReferenceProperty(Category) class sss(webapp.RequestHandler): def get(self): obj1 = Post(title='hhaa') #obj1.title = 'haha' obj1.put() obj2 = Category() obj2.name='haha-kao' obj2.put() obj3=PostCategory() obj3.post=obj1 obj3.category=obj2 obj3.put() self.response.out.write(obj1.categories().get().name) the error is : Traceback (most recent call last): File "D:\Program Files\Google\google_appengine\google\appengine\ext\webapp\__init__.py", line 511, in __call__ handler.get(*groups) File "D:\zjm_code\helloworld\a.py", line 131, in get self.response.out.write(obj1.categories().get().name) AttributeError: 'generator' object has no attribute 'get' so how to get the obj2.name via obj1's method thanks

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  • How to bind an ip address to telnetlib in Python

    - by jack
    The code below binds an ip address to urllib, urllib2, etc. import socket true_socket = socket.socket def bound_socket(*a, **k): sock = true_socket(*a, **k) sock.bind((sourceIP, 0)) return sock socket.socket = bound_socket Is it also able to bind an ip address to telnetlib?

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  • Using a single visual studio 2005 solution with multiple source control applications

    - by Bas Bossink
    In my recent SO question I was helped tremendously in using git as a front-end to ClearCase. However actually trying the suggested answer(s) led to further complications. Visual Studio keeps a reference to the used source control provider in both the .sln as well as the .csproj files. I tried resolving this issue by keeping a modified copy of the .sln with the source control provider paragraph removed but this did not help since each project also has some source control provider information. I don't want to keep private copies of all the projects since this would be a maintenance nightmare. Do any of you have suggestions on how to resolve this issue?

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  • Python: Convert a string to an integer

    - by Adam Nelson
    Does anybody have a quickie for converting an unsafe string to an int? The string typically comes back as: '234\r\n' or something like that. In this case I want 234. If '-1\r\n', I want -1. I never want the method to fail but I don't want to go so far as try, except, pass just to hide errors either (in case something extreme happens).

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