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  • Why is numpy's einsum faster than numpy's built in functions?

    - by Ophion
    Lets start with three arrays of dtype=np.double. Timings are performed on a intel CPU using numpy 1.7.1 compiled with icc and linked to intel's mkl. A AMD cpu with numpy 1.6.1 compiled with gcc without mkl was also used to verify the timings. Please note the timings scale nearly linearly with system size and are not due to the small overhead incurred in the numpy functions if statements these difference will show up in microseconds not milliseconds: arr_1D=np.arange(500,dtype=np.double) large_arr_1D=np.arange(100000,dtype=np.double) arr_2D=np.arange(500**2,dtype=np.double).reshape(500,500) arr_3D=np.arange(500**3,dtype=np.double).reshape(500,500,500) First lets look at the np.sum function: np.all(np.sum(arr_3D)==np.einsum('ijk->',arr_3D)) True %timeit np.sum(arr_3D) 10 loops, best of 3: 142 ms per loop %timeit np.einsum('ijk->', arr_3D) 10 loops, best of 3: 70.2 ms per loop Powers: np.allclose(arr_3D*arr_3D*arr_3D,np.einsum('ijk,ijk,ijk->ijk',arr_3D,arr_3D,arr_3D)) True %timeit arr_3D*arr_3D*arr_3D 1 loops, best of 3: 1.32 s per loop %timeit np.einsum('ijk,ijk,ijk->ijk', arr_3D, arr_3D, arr_3D) 1 loops, best of 3: 694 ms per loop Outer product: np.all(np.outer(arr_1D,arr_1D)==np.einsum('i,k->ik',arr_1D,arr_1D)) True %timeit np.outer(arr_1D, arr_1D) 1000 loops, best of 3: 411 us per loop %timeit np.einsum('i,k->ik', arr_1D, arr_1D) 1000 loops, best of 3: 245 us per loop All of the above are twice as fast with np.einsum. These should be apples to apples comparisons as everything is specifically of dtype=np.double. I would expect the speed up in an operation like this: np.allclose(np.sum(arr_2D*arr_3D),np.einsum('ij,oij->',arr_2D,arr_3D)) True %timeit np.sum(arr_2D*arr_3D) 1 loops, best of 3: 813 ms per loop %timeit np.einsum('ij,oij->', arr_2D, arr_3D) 10 loops, best of 3: 85.1 ms per loop Einsum seems to be at least twice as fast for np.inner, np.outer, np.kron, and np.sum regardless of axes selection. The primary exception being np.dot as it calls DGEMM from a BLAS library. So why is np.einsum faster that other numpy functions that are equivalent? The DGEMM case for completeness: np.allclose(np.dot(arr_2D,arr_2D),np.einsum('ij,jk',arr_2D,arr_2D)) True %timeit np.einsum('ij,jk',arr_2D,arr_2D) 10 loops, best of 3: 56.1 ms per loop %timeit np.dot(arr_2D,arr_2D) 100 loops, best of 3: 5.17 ms per loop The leading theory is from @sebergs comment that np.einsum can make use of SSE2, but numpy's ufuncs will not until numpy 1.8 (see the change log). I believe this is the correct answer, but have not been able to confirm it. Some limited proof can be found by changing the dtype of input array and observing speed difference and the fact that not everyone observes the same trends in timings.

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  • Is it possible to disable user sessions for guest in Joomla 1.5

    - by WebolizeR
    Hi; Is it possible to disable session handling in Joomla 1.5 for guests. I donot use user system in the frontend, i assumed that it's not needed to run queries like below: Site will use APC or Memcache as caching system under heavy load, so it's important for me tHanks for your comments # DELETE FROM jos_session WHERE ( time < '1274709357' ) # SELECT * FROM jos_session WHERE session_id = '70c247cde8dcc4dad1ce111991772475' # UPDATE jos_session SET time='1274710257',userid='0',usertype='',username='',gid='0',guest='1',client_id='0',data='__default|a:8:{s:15:\"session.counter\";i:5;s:19:\"session.timer.start\";i:1274709740;s:18:\"session.timer.last\";i:1274709749;s:17:\"session.timer.now\";i:1274709754;s:22:\"session.client.browser\";s:88:\"Mozilla/5.0 (Windows; U; Windows NT 5.1; en-US; rv:1.9.2.3) Gecko/20100401 Firefox/3.6.3\";s:8:\"registry\";O:9:\"JRegistry\":3:{s:17:\"_defaultNameSpace\";s:7:\"session\";s:9:\"_registry\";a:1:{s:7:\"session\";a:1:{s:4:\"data\";O:8:\"stdClass\":0:{}}}s:7:\"_errors\";a:0:{}}s:4:\"user\";O:5:\"JUser\":19:{s:2:\"id\";i:0;s:4:\"name\";N;s:8:\"username\";N;s:5:\"email\";N;s:8:\"password\";N;s:14:\"password_clear\";s:0:\"\";s:8:\"usertype\";N;s:5:\"block\";N;s:9:\"sendEmail\";i:0;s:3:\"gid\";i:0;s:12:\"registerDate\";N;s:13:\"lastvisitDate\";N;s:10:\"activation\";N;s:6:\"params\";N;s:3:\"aid\";i:0;s:5:\"guest\";i:1;s:7:\"_params\";O:10:\"JParameter\":7:{s:4:\"_raw\";s:0:\"\";s:4:\"_xml\";N;s:9:\"_elements\";a:0:{}s:12:\"_elementPath\";a:1:{i:0;s:74:\"C:\xampp\htdocs\sites\iv.mynet.com\libraries\joomla\html\parameter\element\";}s:17:\"_defaultNameSpace\";s:8:\"_default\";s:9:\"_registry\";a:1:{s:8:\"_default\";a:1:{s:4:\"data\";O:8:\"stdClass\":0:{}}}s:7:\"_errors\";a:0:{}}s:9:\"_errorMsg\";N;s:7:\"_errors\";a:0:{}}s:13:\"session.token\";s:32:\"a2b19c7baf223ad5fd2d5503e18ed323\";}' WHERE session_id='70c247cde8dcc4dad1ce111991772475'

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  • Help! Sikuli unit test can not run

    - by Janet
    Hello, I couldn't run any unit tests either in the window xp? The IDE is functional. I write the simple example unit test script in the editor, as follow: def testHelloWorld(self): print("Hello World!") but no test shows up in the unit test window. When clicking the Run button of the Unit test pane, nothing happens, and the IDE window dissappears, there is no way to get back to it other than restarting the IDE. It had stucked me for several days, that would be preciate if anyone can help me solve this problem! Thank you very much. Janet

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  • Retrieving many huge sized EPS files and converting them to JPEG in ASP.NET application

    - by Ashish Gupta
    I have many (600) EPS files(300 KB - 1 MB) in database. In my ASP.NET application (using ASP.NET 4.0) I need to retrieve them one by one and call a web service which would convert the content to the JPEG file and update the database (JPEGContent column with the JPEG content). However, retrieving the content for 600 of them itself takes too long from the SQL management studio itself (takes 5 minutes for 10 EPS contents). So I have two issues:- 1) How to get the EPS content ( unfortunately, selecting certain number of content is not an option :-( ):- Approach 1:- foreach(var DataRow in DataTable.Rows) { // get the Id and byte[] of EPS // Call the web method to convert EPS content to JPEG which would also update the database. } or foreach(var DataRow in DataTable.Rows) { // get only the Id of EPS // Hit database to get the content of EPS // Call the web method to convert EPS content to JPEG which would also update the database. } or Any other approach? 2) Converting EPS to JPEG using a web method for 600 contents. Ofcourse, each call would be a long running operation. Would task parellel library (TPL) be a better way to achieve this? Also, is doing the entire thing in a SQL CLR function a good idea?

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  • When should I open and close a website's cached WCF proxy?

    - by Brandon Linton
    I've browsed around the other articles on StackOverflow that relate to caching WCF proxies for reuse, and I've read this article explaining why I should explicitly open the proxy before calling anything on it. I'm still a little hazy on the best implementation details. My question is: when should I open and close proxies for service calls on a website, and what should their lifetime be (per call, per request, or per web app)? We aren't planning on leveraging cached security contexts at the moment (but it's not unforeseeable). Thanks!

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  • Can you recommend an alternative for NCover?

    - by Keith
    I'm looking for a good .Net code coverage alternative to NCover (insufficient .Net 3.5 coverage and now pay-for) or VSTS (way too expensive). We currently test with NUnit, but could switch to something with a similar 'layout' for its text fixtures if it were better integrated.

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  • How do I make "simple" throughput servlet-filter?

    - by Tommy
    I'm looking to create a filter that can give me two things: number of request pr minute, and average responsetime pr minute. I already got the individual readings, I'm just not sure how to add them up. My filter captures every request, and it records the time each request takes: public void doFilter(ServletRequest request, ...() { long start = System.currentTimeMillis(); chain.doFilter(request, response); long stop = System.currentTimeMillis(); String time = Util.getTimeDifferenceInSec(start, stop); } This information will be used to create some pretty Google Chart charts. I don't want to store the data in any database. Just a way to get current numbers out when requested As this is a high volume application; low overhead is essential. I'm assuming my applicationserver doesn't provide this information.

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  • yuicompressor error, not sure what is wrong?

    - by mrblah
    Hi, Very confused here, trying out the yuicompressor on a simple javascript file. My js file looks like: function splitText(text) { return text.split('-')[1]; } The error is: [INFO] Using charset Cp1252 [Error] 1:20:illegal character [Error] 1:20:syntax error [Error] 1:40:illegal character [Error] 1:49:missing ; before statement [Error] 1:50:illegal character .. .. [Error] 7:3:missing | in compound statement [error] 1:0:compilation produced 38 syntax errors ... Can someone please explain to me what is wrong?

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  • starting and stopping hsqldb from unit tests

    - by Casey
    I'm trying to create integration tests using hsqldb in an in memory mode. At the moment, I have to start the hsqldb server from the command line before running the unit tests. I would like to be able to be able to control the hsqldb server from my integration tests. I can't seem to get this to all work out though from code. Thanks, Casey Update: This appears to work along with having a hibernate.cfg.xml file in the classpath: org.hsqldb.Server.main(new String[]{}); and in my hibernate.cfg.xml file: <property name="connection.driver_class">org.hsqldb.jdbcDriver</property> <property name="connection.url">jdbc:hsqldb:mem:ww</property> <property name="connection.username">sa</property> <property name="connection.password"></property> <property name="connection.pool_size">1</property> <property name="dialect">org.hibernate.dialect.HSQLDialect</property> <property name="current_session_context_class">thread</property> <property name="cache.provider_class">org.hibernate.cache.NoCacheProvider</property> <property name="hbm2ddl.auto">update</property>

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  • Emma - Block Coverage vs Line Coverage

    - by MasterGaurav
    I have a strange scenario... while doing a EMMA coverage for UT, I get the total block coverage size more than line coverage size. For block coverage, the total size is some 50,000 while the line coverage is out of 18,000. I get (block-coverage-value) / 50,000 and (line-coverage-value) / 18,000 in the report. Is it possible? How can the number of blocks be more than the number of lines in code? btw, you can assume that I know what Block Coverage is: http://emma.sourceforge.net/faq.html#q.blockcoverage

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  • Is there a way to avoid debugger?

    - by Gabriel Šcerbák
    I don't like debugging in a debugger, because I think it is often below the abstraction layer of the programming language and it is often not reproducible. I favor usign unit tests when possible and I think they are a good way, but it is not always that easy to implement them. Do you know about any other alternative approaches to avoid the use of debugger?

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  • Why is ContextConfiguration location different in idea and eclipse

    - by jakob
    Hello experts. In my team we work both in Eclipse and Idea. That works pretty good, except for one minor issue that I can't figure out how to solve. When setting the ContextConfiguration location in our tests and running them inside Eclipse everything works like a charm: @Test(groups = { "database" }) @ContextConfiguration(locations = {" file:src/main/webapp/WEB-INF/applicationContext.xml" }) But in my Idea env I get "could not find applicationContext" error. I need to set the location like this(project name is services): @Test(groups = { "database" }) @ContextConfiguration(locations = {" file:services/src/main/webapp/WEB-INF/applicationContext.xml" }) The project structure is like this: parent.pom with two child poms: services.pom and other.pom. When running the test in the terminal from the service project like this: mvn -Dtest=com.mytest.service.somepackage.TheTest test there are no issues. I guess that since my project structure is parent-with-two-children the need of /service is necessary(The project is created by pointing out the parent pom). Is there a way to fix this? Could you please help me with a solution. thx

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  • How to efficiently save changes made in UI/main thread with Core Data?

    - by Jaanus
    So, there have been several posts here about importing and saving data from an external data source into Core Data. Apple documents a reasonable pattern for this: "import and save on background thread, merge saved objects to main thread." All fine and good. I have a related but different problem: the user is modifying data in the UI and main thread, and thus modifies state of some objects in the managed object context (MOC). I would like to save these changes from time to time. What is a good way to do that? Now, you could say that I could do the same: create a background thread with its own MOC and pass the changed objectID-s there. The catch-22 for me with this is that an object's ID changes when it is saved, and I cannot guarantee the order of things happening. I may end up passing a different objectID into the background thread for the same object, based on whether the object has been previously saved or not, and I don't know if Core Data can resolve this and see that different objectID-s are pointing to the same object and not create duplicates for me. (I could test this, but I'm lazywebbing with this question first.) One thought I had: I could always do MOC saves on a background thread, and queue them up with operationqueue, so that there is always only one save in progress. I would not create a new MOC, I would just use the same MOC as in main thread. Now, this is not thread safe and when someone modifies the MOC in main thread while it is being saved in background thread, the results will probably be catastrophic. But, minus the thread safety, you can see what kind of solution I'd wish for. To be clear, the problem I need to fix is that if I just do the save in main thread, it blocks the UI for an unacceptably long period of time, I want to move the save to background thread. So, questions: what about the reasoning of an object ID changing during saving, and Core Data being able to resolve them to the same object? Would this be the right way of addressing this problem? any other good ways of doing this?

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  • How to use SQLAlchemy to dump an SQL file from query expressions to bulk-insert into a DBMS?

    - by Mahmoud Abdelkader
    Please bear with me as I explain the problem, how I tried to solve it, and my question on how to improve it is at the end. I have a 100,000 line csv file from an offline batch job and I needed to insert it into the database as its proper models. Ordinarily, if this is a fairly straight-forward load, this can be trivially loaded by just munging the CSV file to fit a schema, but I had to do some external processing that requires querying and it's just much more convenient to use SQLAlchemy to generate the data I want. The data I want here is 3 models that represent 3 pre-exiting tables in the database and each subsequent model depends on the previous model. For example: Model C --> Foreign Key --> Model B --> Foreign Key --> Model A So, the models must be inserted in the order A, B, and C. I came up with a producer/consumer approach: - instantiate a multiprocessing.Process which contains a threadpool of 50 persister threads that have a threadlocal connection to a database - read a line from the file using the csv DictReader - enqueue the dictionary to the process, where each thread creates the appropriate models by querying the right values and each thread persists the models in the appropriate order This was faster than a non-threaded read/persist but it is way slower than bulk-loading a file into the database. The job finished persisting after about 45 minutes. For fun, I decided to write it in SQL statements, it took 5 minutes. Writing the SQL statements took me a couple of hours, though. So my question is, could I have used a faster method to insert rows using SQLAlchemy? As I understand it, SQLAlchemy is not designed for bulk insert operations, so this is less than ideal. This follows to my question, is there a way to generate the SQL statements using SQLAlchemy, throw them in a file, and then just use a bulk-load into the database? I know about str(model_object) but it does not show the interpolated values. I would appreciate any guidance for how to do this faster. Thanks!

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  • Moq - How to mock a function call on a concrete object?

    - by dferraro
    Hello, How can I do this in Moq? Foo bar = new Foo(); Fake(bar.PrivateGetter).Return('whatever value') It seems I can only find how to mock an object that was created via the framework. I want to mock just a single method/property on a concrete object I've created... In TypeMock, I would just do Isolate.WhenCalled(bar.PrivateGetter).Returns('whatever value').. Any ideas?

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  • fast algorithm implementation to sort very small set

    - by aaa
    hello. This is the problem I ran into long time ago. I thought I may ask your for your ideas. assume I have very small set of numbers (integers), 4 or 8 elements, that need to be sorted, fast. what would be the best approach/algorithm? my approach was to use the max/min functions. I guess my question pertains more to implementation, rather than type of algorithm. At this point it becomes somewhat hardware dependent , so let us assume Intel 64-bit processor with SSE3 . Thanks

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  • How to test a project with multiple python versions in a sequential way?

    - by ecolell
    I am developing a python adapter to interact with a 3rd party website, without any json or xml api (http://www.class.noaa.gov/). I have a problem when Travis CI run multiple python tests (of the The Travis CI Build Matrix) concurrently. The project is on GitHub at ecolell/noaaclass and the .travis.yml file is: language: python python: - "2.6" - "2.7" - "3.2" - "3.3" install: - "make deploy" script: "make test-coverage-travis-ci" #nosetests after_success: - "make test-coveralls" Specifically, I have a problem when at least 2 python versions were running their unit tests at the same time, because they use the same account of a website. Is there any option to specify to The Build Matrix the execution of each python version in a secuential way? Or maybe, Is there a better way to do this?

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  • Tuning MySQL to take advantage of a 4GB VPS

    - by alistair.mp
    Hello, We're running a large site at the moment which has a dedicated VPS for it's database server which is running MySQL and nothing else. At the moment all four CPU cores are running at close to 100% all of the time but the memory usage sticks at around 268MB out of an available 4096MB. I'm wondering what we can do to better utilise the memory and reduce the CPU load by tweaking MySQL's settings? Here is what we currently have in my.cnf: http://pastie.org/private/hxeji9o8n3u9up9mvtinbq Thanks

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  • junit4 test runner

    - by lamisse
    hello how could we uses junir related methods? could we launch setuponce from each java test? if in my test I launch the appli by calling setuponce, is it correct ?

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  • mocking collection behavior with Moq

    - by Stephen Patten
    Hello, I've read through some of the discussions on the Moq user group and have failed to find an example and have been so far unable to find the scenario that I have. Here is my question and code: // 6 periods var schedule = new List<PaymentPlanPeriod>() { new PaymentPlanPeriod(1000m, args.MinDate.ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(1).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(2).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(3).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(4).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(5).ToString()) }; // Now the proxy is correct with the schedule helper.Setup(h => h.GetPlanPeriods(It.IsAny<String>(), schedule)); Then in my tests I use Periods but the Mocked _PaymentPlanHelper never populates the collection, see below for usage: public IEnumerable<PaymentPlanPeriod> Periods { get { if (CanCalculateExpression()) _PaymentPlanHelper.GetPlanPeriods(this.ToString(), _PaymentSchedule); return _PaymentSchedule; } } Now if I change the mocked object to use another overloaded method of GetPlanPeriods that returns a List like so : var schedule = new List<PaymentPlanPeriod>() { new PaymentPlanPeriod(1000m, args.MinDate.ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(1).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(2).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(3).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(4).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(5).ToString()) }; helper.Setup(h => h.GetPlanPeriods(It.IsAny<String>())).Returns(new List<PaymentPlanPeriod>(schedule)); List<PaymentPlanPeriod> result = new _PaymentPlanHelper.GetPlanPeriods(this.ToString()); This works as expected. Any pointers would be awesome, as long as you don't bash my architecture... :) Thank you, Stephen

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  • Increasing coverage with try-except-finally and a context-manager

    - by Daan Timmer
    This is the flow that I have in my program 277: try: 278: with open(r"c:\afile.txt", "w") as aFile: ...: pass # write data 329: except IOError as ex: ...: print ex 332: finally: 333: if os.path.exists(r"c:\afile.txt"): 334: shutil.copy(r"c:\afile.txt", r"c:\dest.txt") I've got all paths covered except for from line 278 to line 333 I got a normal happy-flow. I stubbed __builtin__.open to raise IOError when the open is called with said file name But how do I go from 278 to 333. Is this even possible? Additional information: - using coverage.py 3.4 (only listing 3.5, we can't currently upgrade to 3.5)

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  • Impact of ordering of correlated subqueries within a projection

    - by Michael Petito
    I'm noticing something a bit unexpected with how SQL Server (SQL Server 2008 in this case) treats correlated subqueries within a select statement. My assumption was that a query plan should not be affected by the mere order in which subqueries (or columns, for that matter) are written within the projection clause of the select statement. However, this does not appear to be the case. Consider the following two queries, which are identical except for the ordering of the subqueries within the CTE: --query 1: subquery for Color is second WITH vw AS ( SELECT p.[ID], (SELECT TOP(1) [FirstName] FROM [Preference] WHERE p.ID = ID AND [FirstName] IS NOT NULL ORDER BY [LastModified] DESC) [FirstName], (SELECT TOP(1) [Color] FROM [Preference] WHERE p.ID = ID AND [Color] IS NOT NULL ORDER BY [LastModified] DESC) [Color] FROM Person p ) SELECT ID, Color, FirstName FROM vw WHERE Color = 'Gray'; --query 2: subquery for Color is first WITH vw AS ( SELECT p.[ID], (SELECT TOP(1) [Color] FROM [Preference] WHERE p.ID = ID AND [Color] IS NOT NULL ORDER BY [LastModified] DESC) [Color], (SELECT TOP(1) [FirstName] FROM [Preference] WHERE p.ID = ID AND [FirstName] IS NOT NULL ORDER BY [LastModified] DESC) [FirstName] FROM Person p ) SELECT ID, Color, FirstName FROM vw WHERE Color = 'Gray'; If you look at the two query plans, you'll see that an outer join is used for each subquery and that the order of the joins is the same as the order the subqueries are written. There is a filter applied to the result of the outer join for color, to filter out rows where the color is not 'Gray'. (It's odd to me that SQL would use an outer join for the color subquery since I have a non-null constraint on the result of the color subquery, but OK.) Most of the rows are removed by the color filter. The result is that query 2 is significantly cheaper than query 1 because fewer rows are involved with the second join. All reasons for constructing such a statement aside, is this an expected behavior? Shouldn't SQL server opt to move the filter as early as possible in the query plan, regardless of the order the subqueries are written?

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