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  • BizTalk and IBM WebSphere MQ Errors

    - by Christopher House
    The project I'm currently working on is going to make heavy use of IBM WebShere MQ to send messages from BizTalk to the client's iSeries box.  I'd never previously worked with WebSphere MQ, so I didn't really have any idea what it would take to get this to work.  I was pleasantly surprised that it wasn't too difficult to configure a send port and pass messages through it to a queue.  Or so I thought... A couple of weeks ago, the client gave me the name of a host, queue manager and queue that I'd been using for my development.  Everything was going great, I was able to put messages onto the queue, I was happy, the client was happy.  Life was good.  Then the client tells me that the host I've been connecting to is actually a Solaris box and that in prod, we'll actually be sending to an iSeries.  We both agree that it would behoove us to start pointing my dev environment to their dev iSeries box in order to flush out any weirdness there might be.  As it turns out, it was a good thing we made the change.  As soon as I reconfigured my BRE policy that sets endpoint information to point to the iSeries queue, we started seeing failures in the event log.  An example from the event log: Event Type: Error Event Source: BizTalk Server 2009 Event Category: BizTalk Server 2009 Event ID: 5754 Date:  6/9/2010 Time:  10:16:41 AM User:  N/A Computer: WINDOWS2003 Description: A message sent to adapter "MQSC" on send port "<my dynamic sendport name>" with URI "mqsc://client/tcp/<hostname>(1414)/<queue manager name>/<queue name>" is suspended.  Error details: Failure encountered while attempting to open queue. queue = <queue name> queueManager = <queue manager name>, reasonCode = 6124  MessageId:  {76825C7C-611A-4A56-8A6F-35E1124BDB5C}  InstanceID: {BA389103-DF9B-493F-8C61-44574822AAD6} The key piece of information in the event entry is the reasonCode, 6124.  A quick Google search shows that reasonCode 6124 is the code for MQRC_NOT_CONNECTED.  According to IBM's docs, this means that you've tried to send a message without first opening a connection to the queue manager.  Obviously, in the context of BizTalk, this is an unexpected error, since this sort of thing should be managed entirely by the send adapter. Perusing IBM's documentation a bit more, I came across some info on how to turn on tracing for MQ.  With tracing enabled, I tried sending a message again, then went and reviewed the trace files.  The bulk of the information in the trace files didn't mean a thing to me, but at the end of one of the files, I did notice this: 00006257 15:40:20.327795   3500.4      RSESS:000009 ------{  reqReleaseConn 00006258 15:40:20.328714   3500.4      RSESS:000009 ------}  reqReleaseConn (rc=OK) 00006259 15:40:20.328727   3500.4      RSESS:000009 ------{  xcsClearTraceIdent 0000625A 15:40:20.328739   3500.4           :       ------}  xcsClearTraceIdent (rc=OK) 0000625B 15:40:20.328752   3500.4           :       -----}! trmzstMQCONNX (rc=MQRC_NOT_AUTHORIZED) 0000625C 15:40:20.328765   3500.4           :       ----}! MQCONNX (rc=MQRC_NOT_AUTHORIZED) 0000625D 15:40:20.328766   3500.4           :       ---}! ImqQueueManager::connect (rc=MQRC_NOT_AUTHORIZED) 0000625E 15:40:20.328767   3500.4           :       --}! ImqObject::open (rc=MQRC_NOT_CONNECTED) 0000625F 15:40:20.328768   3500.4           :       --{  ImqQueue::lock 00006260 15:40:20.328769   3500.4           :       --}! ImqQueue::lock (rc=Unknown(1)) 00006261 15:40:20.328769   3500.4           :       --{  ImqQueue::unlock 00006262 15:40:20.328769   3500.4           :       --}! ImqQueue::unlock (rc=Unknown(1)) It seemed like the MQRC_NOT_CONNECTED error was being caused by a security related issue (MQRC_NOT_AUTHORIZED).  I did notice something earlier in the log where it appeared that MQ was passing a field named UID with a value equal to the account name that my BizTalk service was running under.  I ended up creating a new local account on the BizTalk server that had the same name as a user which had access to the queue manager on the iSeries.  I then created a new host instance that ran under this new account, created a send handler for the MQSC adapter on this new host instance and reconfigured my orchestration to run on the new host instance.  After bouncing all my host instances, I was now able to send messages to the iSeries. It's still not clear to me why we were able to connect to the Solaris server.  I ended up contacting IBM's support and they did confirm that the process sending to MQ does in fact pass the identity to the queue manager it's connecting to.

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  • TFS 2010 Build Custom Activity for Merging Assemblies

    - by Jakob Ehn
    *** The sample build process template discussed in this post is available for download from here: http://cid-ee034c9f620cd58d.office.live.com/self.aspx/BlogSamples/ILMerge.xaml ***   In my previous post I talked about library builds that we use to build and replicate dependencies between applications in TFS. This is typically used for common libraries and tools that several other application need to reference. When the libraries grow in size over time, so does the number of assemblies. So all solutions that uses the common library must reference all the necessary assemblies that they need, and if we for example do a refactoring and extract some code into a new assembly, all the clients must update their references to reflect these changes, otherwise it won’t compile. To improve on this, we use a tool from Microsoft Research called ILMerge (Download from here). It can be used to merge several assemblies into one assembly that contains all types. If you haven’t used this tool before, you should check it out. Previously I have implemented this in builds using a simple batch file that contains the full command, something like this: "%ProgramFiles(x86)%\microsoft\ilmerge\ilmerge.exe" /target:library /attr:ClassLibrary1.bl.dll /out:MyNewLibrary.dll ClassLibrary1.dll ClassLibrar2.dll ClassLibrary3.dll This merges 3 assemblies (ClassLibrary1, 2 and 3) into a new assembly called MyNewLibrary.dll. It will copy the attributes (file version, product version etc..) from ClassLibrary1.dll, using the /attr switch. For more info on ILMerge command line tool, see the above link. This approach works, but requires a little bit too much knowledge for the developers creating builds, therefor I have implemented a custom activity that wraps the use of ILMerge. This makes it much simpler to setup a new build definition and have the build automatically do the merging. The usage of the activity is then implemented as part of the Library Build process template mentioned in the previous post. For this article I have just created a simple build process template that only performs the ILMerge operation.   Below is the code for the custom activity. To make it compile, you need to reference the ILMerge.exe assembly. /// <summary> /// Activity for merging a list of assembies into one, using ILMerge /// </summary> public sealed class ILMergeActivity : BaseCodeActivity { /// <summary> /// A list of file paths to the assemblies that should be merged /// </summary> [RequiredArgument] public InArgument<IEnumerable<string>> InputAssemblies { get; set; } /// <summary> /// Full path to the generated assembly /// </summary> [RequiredArgument] public InArgument<string> OutputFile { get; set; } /// <summary> /// Which input assembly that the attibutes for the generated assembly should be copied from. /// Optional. If not specified, the first input assembly will be used /// </summary> public InArgument<string> AttributeFile { get; set; } /// <summary> /// Kind of assembly to generate, dll or exe /// </summary> public InArgument<TargetKindEnum> TargetKind { get; set; } // If your activity returns a value, derive from CodeActivity<TResult> // and return the value from the Execute method. protected override void Execute(CodeActivityContext context) { string message = InputAssemblies.Get(context).Aggregate("", (current, assembly) => current + (assembly + " ")); TrackMessage(context, "Merging " + message + " into " + OutputFile.Get(context)); ILMerge m = new ILMerge(); m.SetInputAssemblies(InputAssemblies.Get(context).ToArray()); m.TargetKind = TargetKind.Get(context) == TargetKindEnum.Dll ? ILMerge.Kind.Dll : ILMerge.Kind.Exe; m.OutputFile = OutputFile.Get(context); m.AttributeFile = !String.IsNullOrEmpty(AttributeFile.Get(context)) ? AttributeFile.Get(context) : InputAssemblies.Get(context).First(); m.SetTargetPlatform(RuntimeEnvironment.GetSystemVersion().Substring(0,2), RuntimeEnvironment.GetRuntimeDirectory()); m.Merge(); TrackMessage(context, "Generated " + m.OutputFile); } } [Browsable(true)] public enum TargetKindEnum { Dll, Exe } NB: The activity inherits from a BaseCodeActivity class which is an internal helper class which contains some methods and properties useful for moste custom activities. In this case, it uses the TrackeMessage method for writing to the build log. You either need to remove the TrackMessage method calls, or implement this yourself (which is not very hard… ) The custom activity has the following input arguments: InputAssemblies A list with the (full) paths to the assemblies to merge OutputFile The name of the resulting merged assembly AttributeFile Which assembly to use as the template for the attribute of the merged assembly. This argument is optional and if left blank, the first assembly in the input list is used TargetKind Decides what type of assembly to create, can be either a dll or an exe Of course, there are more switches to the ILMerge.exe, and these can be exposed as input arguments as well if you need it. To show how the custom activity can be used, I have attached a build process template (see link at the top of this post) that merges the output of the projects being built (CommonLibrary.dll and CommonLibrary2.dll) into a merged assembly (NewLibrary.dll). The build process template has the following custom process parameters:   The Assemblies To Merge argument is passed into a FindMatchingFiles activity to located all assemblies that are located in the BinariesDirectory folder after the compilation has been performed by Team Build. Here is the complete sequence of activities that performs the merge operation. It is located at the end of the Try, Compile, Test and Associate… sequence: It splits the AssembliesToMerge parameter and appends the full path (using the BinariesDirectory variable) and then enumerates the matching files using the FindMatchingFiles activity. When running the build, you can see that it merges two assemblies into a new one:     And the merged assembly (and associated pdb file) is copied to the drop location together with the rest of the assemblies:

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  • Ubuntu 12.04 installation aborts without giving any errors on Sony Vaio

    - by Guilherme Simoni
    I'm not able to install the release ubuntu-12.04-desktop-i386 on the laptop below: Sony Vaio VGN-FE21H CPU: Intel Core Duo T2300 1.66GHz Memory: 2GB DDR2 533MHz HDD: 100GB Graphics: NVIDIA GeForce 7400 256MB I'm using the ISO "ubuntu-12.04-desktop-i386.iso" burned into a DVD. I know the ISO is OK because I used it to successfully install on Virtualbox. Live DVD boots and runs OK, but I cannot install from it or directly from the boot menu. The installation goes through all the steps until the final part where is asked the Name, Name of PC and password. The problem is in the next step where it should start copying files and present some screens and features of Ubuntu. In this part the installation just close without any error message. If I am running the installation inside the live DVD it closes and returns to the home screen of the Live. If I am running straight from the boot it closes the graphic interface and restarts the PC. Does anybody know or faced the same problem?

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  • What are developer's problems with helpful error messages?

    - by Moo-Juice
    It continue to astounds me that, in this day and age, products that have years of use under their belt, built by teams of professionals, still to this day - fail to provide helpful error messages to the user. In some cases, the addition of just a little piece of extra information could save a user hours of trouble. A program that generates an error, generated it for a reason. It has everything at its disposal to inform the user as much as it can, why something failed. And yet it seems that providing information to aid the user is a low-priority. I think this is a huge failing. One example is from SQL Server. When you try and restore a database that is in use, it quite rightly won't let you. SQL Server knows what processes and applications are accessing it. Why can't it include information about the process(es) that are using the database? I know not everyone passes an Applicatio_Name attribute on their connection string, but even a hint about the machine in question could be helpful. Another candidate, also SQL Server (and mySQL) is the lovely string or binary data would be truncated error message and equivalents. A lot of the time, a simple perusal of the SQL statement that was generated and the table shows which column is the culprit. This isn't always the case, and if the database engine picked up on the error, why can't it save us that time and just tells us which damned column it was? On this example, you could argue that there may be a performance hit to checking it and that this would impede the writer. Fine, I'll buy that. How about, once the database engine knows there is an error, it does a quick comparison after-the-fact, between values that were going to be stored, versus the column lengths. Then display that to the user. ASP.NET's horrid Table Adapters are also guilty. Queries can be executed and one can be given an error message saying that a constraint somewhere is being violated. Thanks for that. Time to compare my data model against the database, because the developers are too lazy to provide even a row number, or example data. (For the record, I'd never use this data-access method by choice, it's just a project I have inherited!). Whenever I throw an exception from my C# or C++ code, I provide everything I have at hand to the user. The decision has been made to throw it, so the more information I can give, the better. Why did my function throw an exception? What was passed in, and what was expected? It takes me just a little longer to put something meaningful in the body of an exception message. Hell, it does nothing but help me whilst I develop, because I know my code throws things that are meaningful. One could argue that complicated exception messages should not be displayed to the user. Whilst I disagree with that, it is an argument that can easily be appeased by having a different level of verbosity depending on your build. Even then, the users of ASP.NET and SQL Server are not your typical users, and would prefer something full of verbosity and yummy information because they can track down their problems faster. Why to developers think it is okay, in this day and age, to provide the bare minimum amount of information when an error occurs? It's 2011 guys, come on.

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  • Resolving TFS_SCHEMA_VERSION Errors In Team Foundation Server 2010 Collection Databases

    - by Jeff Ferguson
    I recently backed up a Team Foundation Server 2010 project collection database and restored it onto another server. All of that went well, until I tried to use the restored database on the new server. As it turns out, the old server was running the Release Candidate of TFS 2010 and the new server is running the RTM version of TFS 2010. I ended up with an error message shown on the new server's Team Web Access site about the project collection's TFS_SCHEMA_VERSION property not containing the appropriate value. As it turns out, TFS_SCHEMA_VERSION is an extended property on the project collection database. I ran the following SQL script against the project collection database restored onto the new server: EXEC [Tfs_DefaultCollection].sys.sp_dropextendedproperty @name=N'TFS_PRODUCT_VERSION' GO EXEC [Tfs_DefaultCollection].sys.sp_addextendedproperty @name=N'TFS_PRODUCT_VERSION', @value=N'10.0.30319.1' GO EXEC [Tfs_DefaultCollection].sys.sp_dropextendedproperty @name=N'TFS_SCHEMA_VERSION' GO EXEC [Tfs_DefaultCollection].sys.sp_addextendedproperty @name=N'TFS_SCHEMA_VERSION', @value=N'Microsoft Team Foundation Server 2010 (RTM)' GO Now, all is well. I can now navigate to http://newserver:8080/tfs/ and see the restored project collection and its contents.

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  • Errors trying to run MongoDB

    - by SomeKittens
    I'm running Ubuntu Server 12.04 (32 bit) on an old (1998) computer. Everything's working fine until I try and start MongoDB. somekittens@DLserver01:~$ mongo MongoDB shell version: 2.2.2 connecting to: test Sun Dec 16 22:47:50 Error: couldn't connect to server 127.0.0.1:27017 src/mongo/shell/mongo.js:91 exception: connect failed Googling the error lead me to all sorts of "repair" options, none of which fixed anything. I've also removed MongoDB and installed it again (using apt-get, have not built from source). Mongo's log shows the following error: Thu Dec 13 18:36:32 warning: 32-bit servers don't have journaling enabled by default. Please use --journal if you want durability. Thu Dec 13 18:36:32 Thu Dec 13 18:36:32 [initandlisten] MongoDB starting : pid=758 port=27017 dbpath=/var/lib/mongodb 32-bit host=DLserver01 Thu Dec 13 18:36:32 [initandlisten] Thu Dec 13 18:36:32 [initandlisten] ** NOTE: when using MongoDB 32 bit, you are limited to about 2 gigabytes of data Thu Dec 13 18:36:32 [initandlisten] ** see http://blog.mongodb.org/post/137788967/32-bit-limitations Thu Dec 13 18:36:32 [initandlisten] ** with --journal, the limit is lower Thu Dec 13 18:36:32 [initandlisten] Thu Dec 13 18:36:32 [initandlisten] db version v2.2.2, pdfile version 4.5 Thu Dec 13 18:36:32 [initandlisten] git version: d1b43b61a5308c4ad0679d34b262c5af9d664267 Thu Dec 13 18:36:32 [initandlisten] build info: Linux domU-12-31-39-01-70-B4 2.6.21.7-2.fc8xen #1 SMP Fri Feb 15 12:39:36 EST 2008 i686 BOOST_LIB_VERSION=1_49 Thu Dec 13 18:36:32 [initandlisten] options: { config: "/etc/mongodb.conf", dbpath: "/var/lib/mongodb", logappend: "true", logpath: "/var/log/mongodb/mongodb.log" } Thu Dec 13 18:36:32 [initandlisten] Unable to check for journal files due to: boost::filesystem::basic_directory_iterator constructor: No such file or directory: "/var/lib/mongodb/journal" ************** Unclean shutdown detected. Please visit http://dochub.mongodb.org/core/repair for recovery instructions. ************* Thu Dec 13 18:36:32 [initandlisten] exception in initAndListen: 12596 old lock file, terminating Thu Dec 13 18:36:32 dbexit: Thu Dec 13 18:36:32 [initandlisten] shutdown: going to close listening sockets... Thu Dec 13 18:36:32 [initandlisten] shutdown: going to flush diaglog... Thu Dec 13 18:36:32 [initandlisten] shutdown: going to close sockets... Thu Dec 13 18:36:32 [initandlisten] shutdown: waiting for fs preallocator... Thu Dec 13 18:36:32 [initandlisten] shutdown: closing all files... Thu Dec 13 18:36:32 [initandlisten] closeAllFiles() finished Thu Dec 13 18:36:32 dbexit: really exiting now Running through the recovery instructions lead to the following adventure: somekittens@DLserver01:/var/log/mongodb$ mongod --repair Sun Dec 16 22:42:54 Sun Dec 16 22:42:54 warning: 32-bit servers don't have journaling enabled by default. Please use --journal if you want durability. Sun Dec 16 22:42:54 Sun Dec 16 22:42:54 [initandlisten] MongoDB starting : pid=1887 port=27017 dbpath=/data/db/ 32-bit host=DLserver01 Sun Dec 16 22:42:54 [initandlisten] Sun Dec 16 22:42:54 [initandlisten] ** NOTE: when using MongoDB 32 bit, you are limited to about 2 gigabytes of data Sun Dec 16 22:42:54 [initandlisten] ** see http://blog.mongodb.org/post/137788967/32-bit-limitations Sun Dec 16 22:42:54 [initandlisten] ** with --journal, the limit is lower Sun Dec 16 22:42:54 [initandlisten] Sun Dec 16 22:42:54 [initandlisten] db version v2.2.2, pdfile version 4.5 Sun Dec 16 22:42:54 [initandlisten] git version: d1b43b61a5308c4ad0679d34b262c5af9d664267 Sun Dec 16 22:42:54 [initandlisten] build info: Linux domU-12-31-39-01-70-B4 2.6.21.7-2.fc8xen #1 SMP Fri Feb 15 12:39:36 EST 2008 i686 BOOST_LIB_VERSION=1_49 Sun Dec 16 22:42:54 [initandlisten] options: { repair: true } Sun Dec 16 22:42:54 [initandlisten] exception in initAndListen: 10296 ********************************************************************* ERROR: dbpath (/data/db/) does not exist. Create this directory or give existing directory in --dbpath. See http://dochub.mongodb.org/core/startingandstoppingmongo ********************************************************************* , terminating Sun Dec 16 22:42:54 dbexit: Sun Dec 16 22:42:54 [initandlisten] shutdown: going to close listening sockets... Sun Dec 16 22:42:54 [initandlisten] shutdown: going to flush diaglog... Sun Dec 16 22:42:54 [initandlisten] shutdown: going to close sockets... Sun Dec 16 22:42:54 [initandlisten] shutdown: waiting for fs preallocator... Sun Dec 16 22:42:54 [initandlisten] shutdown: closing all files... Sun Dec 16 22:42:54 [initandlisten] closeAllFiles() finished Sun Dec 16 22:42:54 dbexit: really exiting now somekittens@DLserver01:/var/log/mongodb$ sudo mkdir /data somekittens@DLserver01:/var/log/mongodb$ sudo mkdir /data/db somekittens@DLserver01:/var/log/mongodb$ mongod --repair Sun Dec 16 22:43:51 Sun Dec 16 22:43:51 warning: 32-bit servers don't have journaling enabled by default. Please use --journal if you want durability. Sun Dec 16 22:43:51 Sun Dec 16 22:43:51 [initandlisten] MongoDB starting : pid=1909 port=27017 dbpath=/data/db/ 32-bit host=DLserver01 Sun Dec 16 22:43:51 [initandlisten] Sun Dec 16 22:43:51 [initandlisten] ** NOTE: when using MongoDB 32 bit, you are limited to about 2 gigabytes of data Sun Dec 16 22:43:51 [initandlisten] ** see http://blog.mongodb.org/post/137788967/32-bit-limitations Sun Dec 16 22:43:51 [initandlisten] ** with --journal, the limit is lower Sun Dec 16 22:43:51 [initandlisten] Sun Dec 16 22:43:51 [initandlisten] db version v2.2.2, pdfile version 4.5 Sun Dec 16 22:43:51 [initandlisten] git version: d1b43b61a5308c4ad0679d34b262c5af9d664267 Sun Dec 16 22:43:51 [initandlisten] build info: Linux domU-12-31-39-01-70-B4 2.6.21.7-2.fc8xen #1 SMP Fri Feb 15 12:39:36 EST 2008 i686 BOOST_LIB_VERSION=1_49 Sun Dec 16 22:43:51 [initandlisten] options: { repair: true } Sun Dec 16 22:43:51 [initandlisten] exception in initAndListen: 10309 Unable to create/open lock file: /data/db/mongod.lock errno:13 Permission denied Is a mongod instance already running?, terminating Sun Dec 16 22:43:51 dbexit: Sun Dec 16 22:43:51 [initandlisten] shutdown: going to close listening sockets... Sun Dec 16 22:43:51 [initandlisten] shutdown: going to flush diaglog... Sun Dec 16 22:43:51 [initandlisten] shutdown: going to close sockets... Sun Dec 16 22:43:51 [initandlisten] shutdown: waiting for fs preallocator... Sun Dec 16 22:43:51 [initandlisten] shutdown: closing all files... Sun Dec 16 22:43:51 [initandlisten] closeAllFiles() finished Sun Dec 16 22:43:51 [initandlisten] shutdown: removing fs lock... Sun Dec 16 22:43:51 [initandlisten] couldn't remove fs lock errno:9 Bad file descriptor Sun Dec 16 22:43:51 dbexit: really exiting now somekittens@DLserver01:/var/log/mongodb$ service mongodb stop stop: Unknown instance: somekittens@DLserver01:/var/log/mongodb$ sudo mongod --repair Sun Dec 16 22:45:04 Sun Dec 16 22:45:04 warning: 32-bit servers don't have journaling enabled by default. Please use --journal if you want durability. Sun Dec 16 22:45:04 Sun Dec 16 22:45:04 [initandlisten] MongoDB starting : pid=1921 port=27017 dbpath=/data/db/ 32-bit host=DLserver01 Sun Dec 16 22:45:04 [initandlisten] Sun Dec 16 22:45:04 [initandlisten] ** NOTE: when using MongoDB 32 bit, you are limited to about 2 gigabytes of data Sun Dec 16 22:45:04 [initandlisten] ** see http://blog.mongodb.org/post/137788967/32-bit-limitations Sun Dec 16 22:45:04 [initandlisten] ** with --journal, the limit is lower Sun Dec 16 22:45:04 [initandlisten] Sun Dec 16 22:45:04 [initandlisten] db version v2.2.2, pdfile version 4.5 Sun Dec 16 22:45:04 [initandlisten] git version: d1b43b61a5308c4ad0679d34b262c5af9d664267 Sun Dec 16 22:45:04 [initandlisten] build info: Linux domU-12-31-39-01-70-B4 2.6.21.7-2.fc8xen #1 SMP Fri Feb 15 12:39:36 EST 2008 i686 BOOST_LIB_VERSION=1_49 Sun Dec 16 22:45:04 [initandlisten] options: { repair: true } Sun Dec 16 22:45:04 [initandlisten] Unable to check for journal files due to: boost::filesystem::basic_directory_iterator constructor: No such file or directory: "/data/db/journal" Sun Dec 16 22:45:04 [initandlisten] finished checking dbs Sun Dec 16 22:45:04 dbexit: Sun Dec 16 22:45:04 [initandlisten] shutdown: going to close listening sockets... Sun Dec 16 22:45:04 [initandlisten] shutdown: going to flush diaglog... Sun Dec 16 22:45:04 [initandlisten] shutdown: going to close sockets... Sun Dec 16 22:45:04 [initandlisten] shutdown: waiting for fs preallocator... Sun Dec 16 22:45:04 [initandlisten] shutdown: closing all files... Sun Dec 16 22:45:04 [initandlisten] closeAllFiles() finished Sun Dec 16 22:45:04 [initandlisten] shutdown: removing fs lock... Sun Dec 16 22:45:04 dbexit: really exiting now Which didn't change anything. What can I do to resolve this? It's an old computer (640MB RAM, single-core P2). Could that be causing it?

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  • Error in running script [closed]

    - by SWEngineer
    I'm trying to run heathusf_v1.1.0.tar.gz found here I installed tcsh to make build_heathusf work. But, when I run ./build_heathusf, I get the following (I'm running that on a Fedora Linux system from Terminal): $ ./build_heathusf Compiling programs to build a library of image processing functions. convexpolyscan.c: In function ‘cdelete’: convexpolyscan.c:346:5: warning: incompatible implicit declaration of built-in function ‘bcopy’ [enabled by default] myalloc.c: In function ‘mycalloc’: myalloc.c:68:16: error: invalid storage class for function ‘store_link’ myalloc.c: In function ‘mymalloc’: myalloc.c:101:16: error: invalid storage class for function ‘store_link’ myalloc.c: In function ‘myfree’: myalloc.c:129:27: error: invalid storage class for function ‘find_link’ myalloc.c:131:12: warning: assignment makes pointer from integer without a cast [enabled by default] myalloc.c: At top level: myalloc.c:150:13: warning: conflicting types for ‘store_link’ [enabled by default] myalloc.c:150:13: error: static declaration of ‘store_link’ follows non-static declaration myalloc.c:91:4: note: previous implicit declaration of ‘store_link’ was here myalloc.c:164:24: error: conflicting types for ‘find_link’ myalloc.c:131:14: note: previous implicit declaration of ‘find_link’ was here Building the mammogram resizing program. gcc -O2 -I. -I../common mkimage.o -o mkimage -L../common -lmammo -lm ../common/libmammo.a(aggregate.o): In function `aggregate': aggregate.c:(.text+0x7fa): undefined reference to `mycalloc' aggregate.c:(.text+0x81c): undefined reference to `mycalloc' aggregate.c:(.text+0x868): undefined reference to `mycalloc' ../common/libmammo.a(aggregate.o): In function `aggregate_median': aggregate.c:(.text+0xbc5): undefined reference to `mymalloc' aggregate.c:(.text+0xbfb): undefined reference to `mycalloc' aggregate.c:(.text+0xc3c): undefined reference to `mycalloc' ../common/libmammo.a(aggregate.o): In function `aggregate': aggregate.c:(.text+0x9b5): undefined reference to `myfree' ../common/libmammo.a(aggregate.o): In function `aggregate_median': aggregate.c:(.text+0xd85): undefined reference to `myfree' ../common/libmammo.a(optical_density.o): In function `linear_optical_density': optical_density.c:(.text+0x29e): undefined reference to `mymalloc' optical_density.c:(.text+0x342): undefined reference to `mycalloc' optical_density.c:(.text+0x383): undefined reference to `mycalloc' ../common/libmammo.a(optical_density.o): In function `log10_optical_density': optical_density.c:(.text+0x693): undefined reference to `mymalloc' optical_density.c:(.text+0x74f): undefined reference to `mycalloc' optical_density.c:(.text+0x790): undefined reference to `mycalloc' ../common/libmammo.a(optical_density.o): In function `map_with_ushort_lut': optical_density.c:(.text+0xb2e): undefined reference to `mymalloc' optical_density.c:(.text+0xb87): undefined reference to `mycalloc' optical_density.c:(.text+0xbc6): undefined reference to `mycalloc' ../common/libmammo.a(optical_density.o): In function `linear_optical_density': optical_density.c:(.text+0x4d9): undefined reference to `myfree' ../common/libmammo.a(optical_density.o): In function `log10_optical_density': optical_density.c:(.text+0x8f1): undefined reference to `myfree' ../common/libmammo.a(optical_density.o): In function `map_with_ushort_lut': optical_density.c:(.text+0xd0d): undefined reference to `myfree' ../common/libmammo.a(virtual_image.o): In function `deallocate_cached_image': virtual_image.c:(.text+0x3dc6): undefined reference to `myfree' virtual_image.c:(.text+0x3dd7): undefined reference to `myfree' ../common/libmammo.a(virtual_image.o):virtual_image.c:(.text+0x3de5): more undefined references to `myfree' follow ../common/libmammo.a(virtual_image.o): In function `allocate_cached_image': virtual_image.c:(.text+0x4233): undefined reference to `mycalloc' virtual_image.c:(.text+0x4253): undefined reference to `mymalloc' virtual_image.c:(.text+0x4275): undefined reference to `mycalloc' virtual_image.c:(.text+0x42e7): undefined reference to `mycalloc' virtual_image.c:(.text+0x44f9): undefined reference to `mycalloc' virtual_image.c:(.text+0x47a9): undefined reference to `mycalloc' virtual_image.c:(.text+0x4a45): undefined reference to `mycalloc' virtual_image.c:(.text+0x4af4): undefined reference to `myfree' collect2: error: ld returned 1 exit status make: *** [mkimage] Error 1 Building the breast segmentation program. gcc -O2 -I. -I../common breastsegment.o segment.o -o breastsegment -L../common -lmammo -lm breastsegment.o: In function `render_segmentation_sketch': breastsegment.c:(.text+0x43): undefined reference to `mycalloc' breastsegment.c:(.text+0x58): undefined reference to `mycalloc' breastsegment.c:(.text+0x12f): undefined reference to `mycalloc' breastsegment.c:(.text+0x1b9): undefined reference to `myfree' breastsegment.c:(.text+0x1c6): undefined reference to `myfree' breastsegment.c:(.text+0x1e1): undefined reference to `myfree' segment.o: In function `find_center': segment.c:(.text+0x53): undefined reference to `mycalloc' segment.c:(.text+0x71): undefined reference to `mycalloc' segment.c:(.text+0x387): undefined reference to `myfree' segment.o: In function `bordercode': segment.c:(.text+0x4ac): undefined reference to `mycalloc' segment.c:(.text+0x546): undefined reference to `mycalloc' segment.c:(.text+0x651): undefined reference to `mycalloc' segment.c:(.text+0x691): undefined reference to `myfree' segment.o: In function `estimate_tissue_image': segment.c:(.text+0x10d4): undefined reference to `mycalloc' segment.c:(.text+0x14da): undefined reference to `mycalloc' segment.c:(.text+0x1698): undefined reference to `mycalloc' segment.c:(.text+0x1834): undefined reference to `mycalloc' segment.c:(.text+0x1850): undefined reference to `mycalloc' segment.o:segment.c:(.text+0x186a): more undefined references to `mycalloc' follow segment.o: In function `estimate_tissue_image': segment.c:(.text+0x1bbc): undefined reference to `myfree' segment.c:(.text+0x1c4a): undefined reference to `mycalloc' segment.c:(.text+0x1c7c): undefined reference to `mycalloc' segment.c:(.text+0x1d8e): undefined reference to `myfree' segment.c:(.text+0x1d9b): undefined reference to `myfree' segment.c:(.text+0x1da8): undefined reference to `myfree' segment.c:(.text+0x1dba): undefined reference to `myfree' segment.c:(.text+0x1dc9): undefined reference to `myfree' segment.o:segment.c:(.text+0x1dd8): more undefined references to `myfree' follow segment.o: In function `estimate_tissue_image': segment.c:(.text+0x20bf): undefined reference to `mycalloc' segment.o: In function `segment_breast': segment.c:(.text+0x24cd): undefined reference to `mycalloc' segment.o: In function `find_center': segment.c:(.text+0x3a4): undefined reference to `myfree' segment.o: In function `bordercode': segment.c:(.text+0x6ac): undefined reference to `myfree' ../common/libmammo.a(aggregate.o): In function `aggregate': aggregate.c:(.text+0x7fa): undefined reference to `mycalloc' aggregate.c:(.text+0x81c): undefined reference to `mycalloc' aggregate.c:(.text+0x868): undefined reference to `mycalloc' ../common/libmammo.a(aggregate.o): In function `aggregate_median': aggregate.c:(.text+0xbc5): undefined reference to `mymalloc' aggregate.c:(.text+0xbfb): undefined reference to `mycalloc' aggregate.c:(.text+0xc3c): undefined reference to `mycalloc' ../common/libmammo.a(aggregate.o): In function `aggregate': aggregate.c:(.text+0x9b5): undefined reference to `myfree' ../common/libmammo.a(aggregate.o): In function `aggregate_median': aggregate.c:(.text+0xd85): undefined reference to `myfree' ../common/libmammo.a(cc_label.o): In function `cc_label': cc_label.c:(.text+0x20c): undefined reference to `mycalloc' cc_label.c:(.text+0x6c2): undefined reference to `mycalloc' cc_label.c:(.text+0xbaa): undefined reference to `myfree' ../common/libmammo.a(cc_label.o): In function `cc_label_0bkgd': cc_label.c:(.text+0xe17): undefined reference to `mycalloc' cc_label.c:(.text+0x12d7): undefined reference to `mycalloc' cc_label.c:(.text+0x17e7): undefined reference to `myfree' ../common/libmammo.a(cc_label.o): In function `cc_relabel_by_intensity': cc_label.c:(.text+0x18c5): undefined reference to `mycalloc' ../common/libmammo.a(cc_label.o): In function `cc_label_4connect': cc_label.c:(.text+0x1cf0): undefined reference to `mycalloc' cc_label.c:(.text+0x2195): undefined reference to `mycalloc' cc_label.c:(.text+0x26a4): undefined reference to `myfree' ../common/libmammo.a(cc_label.o): In function `cc_relabel_by_intensity': cc_label.c:(.text+0x1b06): undefined reference to `myfree' ../common/libmammo.a(convexpolyscan.o): In function `polyscan_coords': convexpolyscan.c:(.text+0x6f0): undefined reference to `mycalloc' convexpolyscan.c:(.text+0x75f): undefined reference to `mycalloc' convexpolyscan.c:(.text+0x7ab): undefined reference to `myfree' convexpolyscan.c:(.text+0x7b8): undefined reference to `myfree' ../common/libmammo.a(convexpolyscan.o): In function `polyscan_poly_cacheim': convexpolyscan.c:(.text+0x805): undefined reference to `mycalloc' convexpolyscan.c:(.text+0x894): undefined reference to `myfree' ../common/libmammo.a(mikesfileio.o): In function `read_segmentation_file': mikesfileio.c:(.text+0x1e9): undefined reference to `mycalloc' mikesfileio.c:(.text+0x205): undefined reference to `mycalloc' ../common/libmammo.a(optical_density.o): In function `linear_optical_density': optical_density.c:(.text+0x29e): undefined reference to `mymalloc' optical_density.c:(.text+0x342): undefined reference to `mycalloc' optical_density.c:(.text+0x383): undefined reference to `mycalloc' ../common/libmammo.a(optical_density.o): In function `log10_optical_density': optical_density.c:(.text+0x693): undefined reference to `mymalloc' optical_density.c:(.text+0x74f): undefined reference to `mycalloc' optical_density.c:(.text+0x790): undefined reference to `mycalloc' ../common/libmammo.a(optical_density.o): In function `map_with_ushort_lut': optical_density.c:(.text+0xb2e): undefined reference to `mymalloc' optical_density.c:(.text+0xb87): undefined reference to `mycalloc' optical_density.c:(.text+0xbc6): undefined reference to `mycalloc' ../common/libmammo.a(optical_density.o): In function `linear_optical_density': optical_density.c:(.text+0x4d9): undefined reference to `myfree' ../common/libmammo.a(optical_density.o): In function `log10_optical_density': optical_density.c:(.text+0x8f1): undefined reference to `myfree' ../common/libmammo.a(optical_density.o): In function `map_with_ushort_lut': optical_density.c:(.text+0xd0d): undefined reference to `myfree' ../common/libmammo.a(virtual_image.o): In function `deallocate_cached_image': virtual_image.c:(.text+0x3dc6): undefined reference to `myfree' virtual_image.c:(.text+0x3dd7): undefined reference to `myfree' ../common/libmammo.a(virtual_image.o):virtual_image.c:(.text+0x3de5): more undefined references to `myfree' follow ../common/libmammo.a(virtual_image.o): In function `allocate_cached_image': virtual_image.c:(.text+0x4233): undefined reference to `mycalloc' virtual_image.c:(.text+0x4253): undefined reference to `mymalloc' virtual_image.c:(.text+0x4275): undefined reference to `mycalloc' virtual_image.c:(.text+0x42e7): undefined reference to `mycalloc' virtual_image.c:(.text+0x44f9): undefined reference to `mycalloc' virtual_image.c:(.text+0x47a9): undefined reference to `mycalloc' virtual_image.c:(.text+0x4a45): undefined reference to `mycalloc' virtual_image.c:(.text+0x4af4): undefined reference to `myfree' collect2: error: ld returned 1 exit status make: *** [breastsegment] Error 1 Building the mass feature generation program. gcc -O2 -I. -I../common afumfeature.o -o afumfeature -L../common -lmammo -lm afumfeature.o: In function `afum_process': afumfeature.c:(.text+0xd80): undefined reference to `mycalloc' afumfeature.c:(.text+0xd9c): undefined reference to `mycalloc' afumfeature.c:(.text+0xe80): undefined reference to `mycalloc' afumfeature.c:(.text+0x11f8): undefined reference to `myfree' afumfeature.c:(.text+0x1207): undefined reference to `myfree' afumfeature.c:(.text+0x1214): undefined reference to `myfree' ../common/libmammo.a(aggregate.o): In function `aggregate': aggregate.c:(.text+0x7fa): undefined reference to `mycalloc' aggregate.c:(.text+0x81c): undefined reference to `mycalloc' aggregate.c:(.text+0x868): undefined reference to `mycalloc' ../common/libmammo.a(aggregate.o): In function `aggregate_median': aggregate.c:(.text+0xbc5): undefined reference to `mymalloc' aggregate.c:(.text+0xbfb): undefined reference to `mycalloc' aggregate.c:(.text+0xc3c): undefined reference to `mycalloc' ../common/libmammo.a(aggregate.o): In function `aggregate': aggregate.c:(.text+0x9b5): undefined reference to `myfree' ../common/libmammo.a(aggregate.o): In function `aggregate_median': aggregate.c:(.text+0xd85): undefined reference to `myfree' ../common/libmammo.a(convexpolyscan.o): In function `polyscan_coords': convexpolyscan.c:(.text+0x6f0): undefined reference to `mycalloc' convexpolyscan.c:(.text+0x75f): undefined reference to `mycalloc' convexpolyscan.c:(.text+0x7ab): undefined reference to `myfree' convexpolyscan.c:(.text+0x7b8): undefined reference to `myfree' ../common/libmammo.a(convexpolyscan.o): In function `polyscan_poly_cacheim': convexpolyscan.c:(.text+0x805): undefined reference to `mycalloc' convexpolyscan.c:(.text+0x894): undefined reference to `myfree' ../common/libmammo.a(mikesfileio.o): In function `read_segmentation_file': mikesfileio.c:(.text+0x1e9): undefined reference to `mycalloc' mikesfileio.c:(.text+0x205): undefined reference to `mycalloc' ../common/libmammo.a(optical_density.o): In function `linear_optical_density': optical_density.c:(.text+0x29e): undefined reference to `mymalloc' optical_density.c:(.text+0x342): undefined reference to `mycalloc' optical_density.c:(.text+0x383): undefined reference to `mycalloc' ../common/libmammo.a(optical_density.o): In function `log10_optical_density': optical_density.c:(.text+0x693): undefined reference to `mymalloc' optical_density.c:(.text+0x74f): undefined reference to `mycalloc' optical_density.c:(.text+0x790): undefined reference to `mycalloc' ../common/libmammo.a(optical_density.o): In function `map_with_ushort_lut': optical_density.c:(.text+0xb2e): undefined reference to `mymalloc' optical_density.c:(.text+0xb87): undefined reference to `mycalloc' optical_density.c:(.text+0xbc6): undefined reference to `mycalloc' ../common/libmammo.a(optical_density.o): In function `linear_optical_density': optical_density.c:(.text+0x4d9): undefined reference to `myfree' ../common/libmammo.a(optical_density.o): In function `log10_optical_density': optical_density.c:(.text+0x8f1): undefined reference to `myfree' ../common/libmammo.a(optical_density.o): In function `map_with_ushort_lut': optical_density.c:(.text+0xd0d): undefined reference to `myfree' ../common/libmammo.a(virtual_image.o): In function `deallocate_cached_image': virtual_image.c:(.text+0x3dc6): undefined reference to `myfree' virtual_image.c:(.text+0x3dd7): undefined reference to `myfree' ../common/libmammo.a(virtual_image.o):virtual_image.c:(.text+0x3de5): more undefined references to `myfree' follow ../common/libmammo.a(virtual_image.o): In function `allocate_cached_image': virtual_image.c:(.text+0x4233): undefined reference to `mycalloc' virtual_image.c:(.text+0x4253): undefined reference to `mymalloc' virtual_image.c:(.text+0x4275): undefined reference to `mycalloc' virtual_image.c:(.text+0x42e7): undefined reference to `mycalloc' virtual_image.c:(.text+0x44f9): undefined reference to `mycalloc' virtual_image.c:(.text+0x47a9): undefined reference to `mycalloc' virtual_image.c:(.text+0x4a45): undefined reference to `mycalloc' virtual_image.c:(.text+0x4af4): undefined reference to `myfree' collect2: error: ld returned 1 exit status make: *** [afumfeature] Error 1 Building the mass detection program. make: Nothing to be done for `all'. Building the performance evaluation program. gcc -O2 -I. -I../common DDSMeval.o polyscan.o -o DDSMeval -L../common -lmammo -lm ../common/libmammo.a(mikesfileio.o): In function `read_segmentation_file': mikesfileio.c:(.text+0x1e9): undefined reference to `mycalloc' mikesfileio.c:(.text+0x205): undefined reference to `mycalloc' collect2: error: ld returned 1 exit status make: *** [DDSMeval] Error 1 Building the template creation program. gcc -O2 -I. -I../common mktemplate.o polyscan.o -o mktemplate -L../common -lmammo -lm Building the drawimage program. gcc -O2 -I. -I../common drawimage.o -o drawimage -L../common -lmammo -lm ../common/libmammo.a(mikesfileio.o): In function `read_segmentation_file': mikesfileio.c:(.text+0x1e9): undefined reference to `mycalloc' mikesfileio.c:(.text+0x205): undefined reference to `mycalloc' collect2: error: ld returned 1 exit status make: *** [drawimage] Error 1 Building the compression/decompression program jpeg. gcc -O2 -DSYSV -DNOTRUNCATE -c lexer.c lexer.c:41:1: error: initializer element is not constant lexer.c:41:1: error: (near initialization for ‘yyin’) lexer.c:41:1: error: initializer element is not constant lexer.c:41:1: error: (near initialization for ‘yyout’) lexer.c: In function ‘initparser’: lexer.c:387:21: warning: incompatible implicit declaration of built-in function ‘strlen’ [enabled by default] lexer.c: In function ‘MakeLink’: lexer.c:443:16: warning: incompatible implicit declaration of built-in function ‘malloc’ [enabled by default] lexer.c:447:7: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] lexer.c:452:7: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] lexer.c:455:34: warning: incompatible implicit declaration of built-in function ‘calloc’ [enabled by default] lexer.c:458:7: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] lexer.c:460:3: warning: incompatible implicit declaration of built-in function ‘strcpy’ [enabled by default] lexer.c: In function ‘getstr’: lexer.c:548:26: warning: incompatible implicit declaration of built-in function ‘malloc’ [enabled by default] lexer.c:552:4: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] lexer.c:557:21: warning: incompatible implicit declaration of built-in function ‘calloc’ [enabled by default] lexer.c:557:28: warning: incompatible implicit declaration of built-in function ‘strlen’ [enabled by default] lexer.c:561:7: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] lexer.c: In function ‘parser’: lexer.c:794:21: warning: incompatible implicit declaration of built-in function ‘calloc’ [enabled by default] lexer.c:798:8: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] lexer.c:1074:21: warning: incompatible implicit declaration of built-in function ‘calloc’ [enabled by default] lexer.c:1078:8: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] lexer.c:1116:21: warning: incompatible implicit declaration of built-in function ‘calloc’ [enabled by default] lexer.c:1120:8: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] lexer.c:1154:25: warning: incompatible implicit declaration of built-in function ‘calloc’ [enabled by default] lexer.c:1158:5: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] lexer.c:1190:5: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] lexer.c:1247:25: warning: incompatible implicit declaration of built-in function ‘calloc’ [enabled by default] lexer.c:1251:5: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] lexer.c:1283:5: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] lexer.c: In function ‘yylook’: lexer.c:1867:9: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] lexer.c:1867:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] lexer.c:1877:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] lexer.c:1877:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] make: *** [lexer.o] Error 1

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  • 'Make' command compiling errors

    - by G_T
    Im trying to locally install a program which is written in C++. I have downloaded the program and am attempting to use the "make" command to compile the program as the programs instructions dictate. However when I do I get this error: /usr/include/stdc-predef.h:30:26: fatal error: bits/predefs.h: No such file or directory compilation terminated. Looking around on the internet some people seem to address this problem by sudo apt-get install libc6-dev-i386 I checked to see if this package was installed and it was not. When I try to install it I get E: Unable to locate package libc6-dev-i386 I have already run sudo apt get update Im sure this is a rookie question but any help is appreciated, I'm running 13.10 32-bit. UPDATE: I've tried other suggestions I've found on similar error. All I have managed is a different but similar error. Here is what I get. Geoffrey@Geoffrey-Latitude-E6400:/usr/local/src/trinityrnaseq_r2013_08_14$ make Using gnu compiler for Inchworm and Chrysalis cd Inchworm && (test -e configure || autoreconf) \ && ./configure --prefix=`pwd` && make install checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for g++... g++ checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... gcc3 checking for library containing cos... none required configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: config.h is unchanged config.status: executing depfiles commands make[1]: Entering directory `/usr/local/src/trinityrnaseq_r2013_08_14/Inchworm' Making install in src make[2]: Entering directory `/usr/local/src/trinityrnaseq_r2013_08_14/Inchworm/src' if g++ -DHAVE_CONFIG_H -I. -I. -I.. -pedantic -fopenmp -Wall -Wextra -Wno-long-long -Wno-deprecated -m64 -g -O2 -MT Fasta_entry.o -MD -MP -MF ".deps/Fasta_entry.Tpo" -c -o Fasta_entry.o Fasta_entry.cpp; \ then mv -f ".deps/Fasta_entry.Tpo" ".deps/Fasta_entry.Po"; else rm -f ".deps/Fasta_entry.Tpo"; exit 1; fi In file included from Fasta_entry.hpp:4:0, from Fasta_entry.cpp:1: /usr/include/c++/4.8/string:38:28: fatal error: bits/c++config.h: No such file or directory #include <bits/c++config.h> ^ compilation terminated. make[2]: *** [Fasta_entry.o] Error 1 make[2]: Leaving directory `/usr/local/src/trinityrnaseq_r2013_08_14/Inchworm/src' make[1]: *** [install-recursive] Error 1 make[1]: Leaving directory `/usr/local/src/trinityrnaseq_r2013_08_14/Inchworm' make: *** [inchworm] Error 2

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  • Errors when installing Open Office

    - by user109036
    I followed the first set of instructions on this page to install Open Office: How to install Open Office? However, the last step which says to change the CHMOD of a folder, I got an error saying that the directory does not exist. Open Office now appears in my Ubuntu start menu, but clicking on it does nothing. I tried a reboot. Below is what I could copy from my terminal. I am running the latest Ubuntu. I have not uninstalled Libreoffice as suggested somewhere. The reason is that in the Ubuntu software centre, Libre office appears to be made up of several components and I don't know which ones to remove (or all maybe?). They are Libreoffice Draw, Math, Writer, Calc. After this operation, 480 MB of additional disk space will be used. Do you want to continue [Y/n]? y Get:1 http://gb.archive.ubuntu.com/ubuntu/ quantal-updates/universe openjdk-6-jre-lib all 6b24-1.11.5-0ubuntu1~12.10.1 [6,135 kB] Get:2 http://ppa.launchpad.net/upubuntu-com/office/ubuntu/ quantal/main openoffice amd64 3.4~oneiric [321 MB] Get:3 http://gb.archive.ubuntu.com/ubuntu/ quantal/main ca-certificates-java all 20120721 [13.2 kB] Get:4 http://gb.archive.ubuntu.com/ubuntu/ quantal/main tzdata-java all 2012e-0ubuntu2 [140 kB] Get:5 http://gb.archive.ubuntu.com/ubuntu/ quantal/main java-common all 0.43ubuntu3 [61.7 kB] Get:6 http://gb.archive.ubuntu.com/ubuntu/ quantal-updates/universe openjdk-6-jre-headless amd64 6b24-1.11.5-0ubuntu1~12.10.1 [25.4 MB] Get:7 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libgif4 amd64 4.1.6-9.1ubuntu1 [31.3 kB] Get:8 http://gb.archive.ubuntu.com/ubuntu/ quantal-updates/universe openjdk-6-jre amd64 6b24-1.11.5-0ubuntu1~12.10.1 [234 kB] Get:9 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libatk-wrapper-java all 0.30.4-0ubuntu4 [29.8 kB] Get:10 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libatk-wrapper-java-jni amd64 0.30.4-0ubuntu4 [31.1 kB] Get:11 http://gb.archive.ubuntu.com/ubuntu/ quantal/main xorg-sgml-doctools all 1:1.10-1 [12.0 kB] Get:12 http://gb.archive.ubuntu.com/ubuntu/ quantal/main x11proto-core-dev all 7.0.23-1 [744 kB] Get:13 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libice-dev amd64 2:1.0.8-2 [57.6 kB] Get:14 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libpthread-stubs0 amd64 0.3-3 [3,258 B] Get:15 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libpthread-stubs0-dev amd64 0.3-3 [2,866 B] Get:16 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libsm-dev amd64 2:1.2.1-2 [19.9 kB] Get:17 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libxau-dev amd64 1:1.0.7-1 [10.2 kB] Get:18 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libxdmcp-dev amd64 1:1.1.1-1 [26.9 kB] Get:19 http://gb.archive.ubuntu.com/ubuntu/ quantal/main x11proto-input-dev all 2.2-1 [133 kB] Get:20 http://gb.archive.ubuntu.com/ubuntu/ quantal/main x11proto-kb-dev all 1.0.6-2 [269 kB] Get:21 http://gb.archive.ubuntu.com/ubuntu/ quantal/main xtrans-dev all 1.2.7-1 [84.3 kB] Get:22 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libxcb1-dev amd64 1.8.1-1ubuntu1 [82.6 kB] Get:23 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libx11-dev amd64 2:1.5.0-1 [912 kB] Get:24 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libx11-doc all 2:1.5.0-1 [2,460 kB] Get:25 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libxt-dev amd64 1:1.1.3-1 [492 kB] Get:26 http://gb.archive.ubuntu.com/ubuntu/ quantal/main ttf-dejavu-extra all 2.33-2ubuntu1 [3,420 kB] Get:27 http://gb.archive.ubuntu.com/ubuntu/ quantal-updates/universe icedtea-6-jre-cacao amd64 6b24-1.11.5-0ubuntu1~12.10.1 [417 kB] Get:28 http://gb.archive.ubuntu.com/ubuntu/ quantal-updates/universe icedtea-6-jre-jamvm amd64 6b24-1.11.5-0ubuntu1~12.10.1 [581 kB] Get:29 http://gb.archive.ubuntu.com/ubuntu/ quantal-updates/main icedtea-netx-common all 1.3-1ubuntu1.1 [617 kB] Get:30 http://gb.archive.ubuntu.com/ubuntu/ quantal-updates/main icedtea-netx amd64 1.3-1ubuntu1.1 [16.2 kB] Get:31 http://gb.archive.ubuntu.com/ubuntu/ quantal-updates/universe openjdk-6-jdk amd64 6b24-1.11.5-0ubuntu1~12.10.1 [11.1 MB] Fetched 374 MB in 9min 18s (671 kB/s) Extract templates from packages: 100% Selecting previously unselected package openjdk-6-jre-lib. (Reading database ... 143191 files and directories currently installed.) Unpacking openjdk-6-jre-lib (from .../openjdk-6-jre-lib_6b24-1.11.5-0ubuntu1~12.10.1_all.deb) ... Selecting previously unselected package ca-certificates-java. Unpacking ca-certificates-java (from .../ca-certificates-java_20120721_all.deb) ... Selecting previously unselected package tzdata-java. Unpacking tzdata-java (from .../tzdata-java_2012e-0ubuntu2_all.deb) ... Selecting previously unselected package java-common. Unpacking java-common (from .../java-common_0.43ubuntu3_all.deb) ... Selecting previously unselected package openjdk-6-jre-headless:amd64. Unpacking openjdk-6-jre-headless:amd64 (from .../openjdk-6-jre-headless_6b24-1.11.5-0ubuntu1~12.10.1_amd64.deb) ... Selecting previously unselected package libgif4:amd64. Unpacking libgif4:amd64 (from .../libgif4_4.1.6-9.1ubuntu1_amd64.deb) ... Selecting previously unselected package openjdk-6-jre:amd64. 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Unpacking icedtea-6-jre-jamvm:amd64 (from .../icedtea-6-jre-jamvm_6b24-1.11.5-0ubuntu1~12.10.1_amd64.deb) ... Selecting previously unselected package icedtea-netx-common. Unpacking icedtea-netx-common (from .../icedtea-netx-common_1.3-1ubuntu1.1_all.deb) ... Selecting previously unselected package icedtea-netx:amd64. Unpacking icedtea-netx:amd64 (from .../icedtea-netx_1.3-1ubuntu1.1_amd64.deb) ... Selecting previously unselected package openjdk-6-jdk:amd64. Unpacking openjdk-6-jdk:amd64 (from .../openjdk-6-jdk_6b24-1.11.5-0ubuntu1~12.10.1_amd64.deb) ... Selecting previously unselected package openoffice. Unpacking openoffice (from .../openoffice_3.4~oneiric_amd64.deb) ... Processing triggers for doc-base ... Processing 2 added doc-base files... Processing triggers for man-db ... Processing triggers for desktop-file-utils ... Processing triggers for bamfdaemon ... Rebuilding /usr/share/applications/bamf.index... Processing triggers for gnome-menus ... Processing triggers for hicolor-icon-theme ... Processing triggers for fontconfig ... Processing triggers for gnome-icon-theme ... Processing triggers for shared-mime-info ... Setting up tzdata-java (2012e-0ubuntu2) ... Setting up java-common (0.43ubuntu3) ... Setting up libgif4:amd64 (4.1.6-9.1ubuntu1) ... Setting up xorg-sgml-doctools (1:1.10-1) ... Setting up x11proto-core-dev (7.0.23-1) ... Setting up libice-dev:amd64 (2:1.0.8-2) ... Setting up libpthread-stubs0:amd64 (0.3-3) ... Setting up libpthread-stubs0-dev:amd64 (0.3-3) ... Setting up libsm-dev:amd64 (2:1.2.1-2) ... Setting up libxau-dev:amd64 (1:1.0.7-1) ... Setting up libxdmcp-dev:amd64 (1:1.1.1-1) ... Setting up x11proto-input-dev (2.2-1) ... Setting up x11proto-kb-dev (1.0.6-2) ... Setting up xtrans-dev (1.2.7-1) ... Setting up libxcb1-dev:amd64 (1.8.1-1ubuntu1) ... Setting up libx11-dev:amd64 (2:1.5.0-1) ... Setting up libx11-doc (2:1.5.0-1) ... Setting up libxt-dev:amd64 (1:1.1.3-1) ... Setting up ttf-dejavu-extra (2.33-2ubuntu1) ... Setting up icedtea-netx-common (1.3-1ubuntu1.1) ... Setting up openjdk-6-jre-lib (6b24-1.11.5-0ubuntu1~12.10.1) ... Setting up openjdk-6-jre-headless:amd64 (6b24-1.11.5-0ubuntu1~12.10.1) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up ca-certificates-java (20120721) ... Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:Microsec_e-Szigno_Root_CA.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:ComSign_Secured_CA.pem Adding debian:Buypass_Class_2_CA_1.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Certum_Root_CA.pem Adding debian:AddTrust_External_Root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem Adding debian:AC_Raíz_Certicámara_S.A..pem Adding debian:NetLock_Arany_=Class_Gold=_Fotanúsítvány.pem Adding debian:Taiwan_GRCA.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:Juur-SK.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:NetLock_Qualified_=Class_QA=_Root.pem Adding debian:TC_TrustCenter_Class_2_CA_II.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:ACEDICOM_Root.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:America_Online_Root_Certification_Authority_2.pem Adding debian:TC_TrustCenter_Universal_CA_I.pem Adding debian:SwissSign_Platinum_CA_-_G2.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:SecureSign_RootCA11.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:Buypass_Class_3_CA_1.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:UbuntuOne-Go_Daddy_Class_2_CA.pem Adding debian:Equifax_Secure_eBusiness_CA_1.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:TC_TrustCenter_Universal_CA_III.pem Adding debian:ca.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem Adding debian:NetLock_Express_=Class_C=_Root.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:Firmaprofesional_Root_CA.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:cacert.org.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:RSA_Security_2048_v3.pem Adding debian:Staat_der_Nederlanden_Root_CA.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:TDC_OCES_Root_CA.pem Adding debian:A-Trust-nQual-03.pem Adding debian:Equifax_Secure_CA.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:ApplicationCA_-_Japanese_Government.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:ComSign_CA.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:UTN_DATACorp_SGC_Root_CA.pem Adding debian:CA_Disig.pem Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:GTE_CyberTrust_Global_Root.pem Adding debian:ValiCert_Class_1_VA.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:spi-ca-2003.pem Adding debian:America_Online_Root_Certification_Authority_1.pem Adding debian:AffirmTrust_Premium.pem Adding debian:Sonera_Class_1_Root_CA.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:StartCom_Certification_Authority.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Thawte_Premium_Server_CA.pem Adding debian:EBG_Elektronik_Sertifika_Hizmet_Saglayicisi.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem Adding debian:NetLock_Business_=Class_B=_Root.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:IGC_A.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:DST_Root_CA_X3.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem Adding debian:Root_CA_Generalitat_Valenciana.pem Adding debian:UTN_USERFirst_Email_Root_CA.pem Adding debian:ssl-cert-snakeoil.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem Adding debian:TDC_Internet_Root_CA.pem Adding debian:UbuntuOne-ValiCert_Class_2_VA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:spi-cacert-2008.pem Adding debian:Izenpe.com.pem Adding debian:EC-ACC.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:CNNIC_ROOT.pem Adding debian:NetLock_Notary_=Class_A=_Root.pem Adding debian:Equifax_Secure_eBusiness_CA_2.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Secure_Global_CA.pem Adding debian:UbuntuOne-Go_Daddy_CA.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:Wells_Fargo_Root_CA.pem Adding debian:Thawte_Server_CA.pem Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem Adding debian:TC_TrustCenter_Class_3_CA_II.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:Equifax_Secure_Global_eBusiness_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:TÜBITAK_UEKAE_Kök_Sertifika_Hizmet_Saglayicisi_-_Sürüm_3.pem Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:RSA_Root_Certificate_1.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:Entrust.net_Secure_Server_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Certigna.pem Adding debian:AffirmTrust_Networking.pem Adding debian:ValiCert_Class_2_VA.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:SecureTrust_CA.pem done. Setting up openjdk-6-jre:amd64 (6b24-1.11.5-0ubuntu1~12.10.1) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode Setting up libatk-wrapper-java (0.30.4-0ubuntu4) ... Setting up icedtea-6-jre-cacao:amd64 (6b24-1.11.5-0ubuntu1~12.10.1) ... Setting up icedtea-6-jre-jamvm:amd64 (6b24-1.11.5-0ubuntu1~12.10.1) ... Setting up icedtea-netx:amd64 (1.3-1ubuntu1.1) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/javaws to provide /usr/bin/javaws (javaws) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/itweb-settings to provide /usr/bin/itweb-settings (itweb-settings) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/javaws to provide /usr/bin/javaws (javaws) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/itweb-settings to provide /usr/bin/itweb-settings (itweb-settings) in auto mode Setting up openjdk-6-jdk:amd64 (6b24-1.11.5-0ubuntu1~12.10.1) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javah to provide /usr/bin/javah (javah) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode Setting up openoffice (3.4~oneiric) ... Setting up libatk-wrapper-java-jni:amd64 (0.30.4-0ubuntu4) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place philip@X301-2:~$ sudo apt-get install libxrandr2:i386 libxinerama1:i386 Reading package lists... Done Building dependency tree Reading state information... Done The following package was automatically installed and is no longer required: linux-headers-3.5.0-17 Use 'apt-get autoremove' to remove it. The following extra packages will be installed: gcc-4.7-base:i386 libc6:i386 libgcc1:i386 libx11-6:i386 libxau6:i386 libxcb1:i386 libxdmcp6:i386 libxext6:i386 libxrender1:i386 Suggested packages: glibc-doc:i386 locales:i386 The following NEW packages will be installed gcc-4.7-base:i386 libc6:i386 libgcc1:i386 libx11-6:i386 libxau6:i386 libxcb1:i386 libxdmcp6:i386 libxext6:i386 libxinerama1:i386 libxrandr2:i386 libxrender1:i386 0 upgraded, 11 newly installed, 0 to remove and 93 not upgraded. Need to get 4,936 kB of archives. After this operation, 11.9 MB of additional disk space will be used. Do you want to continue [Y/n]? y Get:1 http://gb.archive.ubuntu.com/ubuntu/ quantal/main gcc-4.7-base i386 4.7.2-2ubuntu1 [15.5 kB] Get:2 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libc6 i386 2.15-0ubuntu20 [3,940 kB] Get:3 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libgcc1 i386 1:4.7.2-2ubuntu1 [53.5 kB] Get:4 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libxau6 i386 1:1.0.7-1 [8,582 B] Get:5 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libxdmcp6 i386 1:1.1.1-1 [13.1 kB] Get:6 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libxcb1 i386 1.8.1-1ubuntu1 [48.7 kB] Get:7 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libx11-6 i386 2:1.5.0-1 [776 kB] Get:8 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libxext6 i386 2:1.3.1-2 [33.9 kB] Get:9 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libxinerama1 i386 2:1.1.2-1 [8,118 B] Get:10 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libxrender1 i386 1:0.9.7-1 [20.1 kB] Get:11 http://gb.archive.ubuntu.com/ubuntu/ quantal/main libxrandr2 i386 2:1.4.0-1 [18.8 kB] Fetched 4,936 kB in 30s (161 kB/s) Preconfiguring packages ... Selecting previously unselected package gcc-4.7-base:i386. (Reading database ... 146005 files and directories currently installed.) Unpacking gcc-4.7-base:i386 (from .../gcc-4.7-base_4.7.2-2ubuntu1_i386.deb) ... Selecting previously unselected package libc6:i386. Unpacking libc6:i386 (from .../libc6_2.15-0ubuntu20_i386.deb) ... Selecting previously unselected package libgcc1:i386. Unpacking libgcc1:i386 (from .../libgcc1_1%3a4.7.2-2ubuntu1_i386.deb) ... Selecting previously unselected package libxau6:i386. Unpacking libxau6:i386 (from .../libxau6_1%3a1.0.7-1_i386.deb) ... Selecting previously unselected package libxdmcp6:i386. Unpacking libxdmcp6:i386 (from .../libxdmcp6_1%3a1.1.1-1_i386.deb) ... Selecting previously unselected package libxcb1:i386. Unpacking libxcb1:i386 (from .../libxcb1_1.8.1-1ubuntu1_i386.deb) ... Selecting previously unselected package libx11-6:i386. Unpacking libx11-6:i386 (from .../libx11-6_2%3a1.5.0-1_i386.deb) ... Selecting previously unselected package libxext6:i386. Unpacking libxext6:i386 (from .../libxext6_2%3a1.3.1-2_i386.deb) ... Selecting previously unselected package libxinerama1:i386. Unpacking libxinerama1:i386 (from .../libxinerama1_2%3a1.1.2-1_i386.deb) ... Selecting previously unselected package libxrender1:i386. Unpacking libxrender1:i386 (from .../libxrender1_1%3a0.9.7-1_i386.deb) ... Selecting previously unselected package libxrandr2:i386. Unpacking libxrandr2:i386 (from .../libxrandr2_2%3a1.4.0-1_i386.deb) ... Setting up gcc-4.7-base:i386 (4.7.2-2ubuntu1) ... Setting up libc6:i386 (2.15-0ubuntu20) ... Setting up libgcc1:i386 (1:4.7.2-2ubuntu1) ... Setting up libxau6:i386 (1:1.0.7-1) ... Setting up libxdmcp6:i386 (1:1.1.1-1) ... Setting up libxcb1:i386 (1.8.1-1ubuntu1) ... Setting up libx11-6:i386 (2:1.5.0-1) ... Setting up libxext6:i386 (2:1.3.1-2) ... Setting up libxinerama1:i386 (2:1.1.2-1) ... Setting up libxrender1:i386 (1:0.9.7-1) ... Setting up libxrandr2:i386 (2:1.4.0-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place $ sudo chmod a+rx /opt/openoffice.org3/share/uno_packages/cache/uno_packages chmod: cannot access `/opt/openoffice.org3/share/uno_packages/cache/uno_packages': No such file or directory

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  • Event Viewer: atapi errors

    - by Wesley
    Specs for Samsung N120 Netbook Atom N270 @ 1.60 GHz / 160 GB IDE HDD / 2 GB PC2-5300 DDR2 RAM / Windows XP Home SP3 So I'm still getting some atapi errors in my Event Viewer. Here are two atapi errors I am getting over and over again: (1) The device, \Device\Ide\IdePort0, did not respond within the timeout period. (2) The driver detected a controller error on \Device\Ide\IdePort0. In addition, I am repeatedly getting this warning as well: (1) An error was detected on device \Device\Harddisk0\D during a paging operation. I just got this back from repair, where before, I couldn't boot at all because I was led to a black screen saying "Operating System Not Found". Still, I got it back and it can boot again, without any hard drive replacement or data loss. So, how can I get rid of these errors and warnings? What could have happened during repairs to allow my netbook to boot again? Thanks in advance.

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  • Good practices - database programming, unit testing

    - by Piotr Rodak
    Jason Brimhal wrote today on his blog that new book, Defensive Database Programming , written by Alex Kuznetsov ( blog ) is coming to bookstores. Alex writes about various techniques that make your code safer to run. SQL injection is not the only one vulnerability the code may be exposed to. Some other include inconsistent search patterns, unsupported character sets, locale settings, issues that may occur during high concurrency conditions, logic that breaks when certain conditions are not met. The...(read more)

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  • Errors while updating Ubuntu 13.10

    - by santiago
    When I execute the updater it always throws the same error saying: Failed to download repository information. Check your internet connection. And when I run the sudo apt-get update I get these lines at the end: W: Failed to fetch cdrom://Ubuntu 13.10 Saucy Salamander - Release i386 (20131016.1)/dists/saucy/main/binary-i386/Packages Please use apt-cdrom to make this CD-ROM recognized by APT. apt-get update cannot be used to add new CD-ROMs W: Failed to fetch cdrom://Ubuntu 13.10 Saucy Salamander - Release i386 (20131016.1)/dists/saucy/restricted/binary-i386/Packages Please use apt-cdrom to make this CD-ROM recognized by APT. apt-get update cannot be used to add new CD-ROMs W: Failed to fetch http://ppa.launchpad.net/tiheum/equinox/ubuntu/dists/saucy/main/source/Sources 404 Not Found W: Failed to fetch http://ppa.launchpad.net/tiheum/equinox/ubuntu/dists/saucy/main/binary-i386/Packages 404 Not Found E: Some index files failed to download. They have been ignored, or old ones used instead

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  • Custom Error, 404, 401 pages in SharePoint&hellip;

    - by Shawn Cicoria
    In WSS 3.0/MOSS 2007 we had to resort to things like HttpModules [1] for errors, access denied, or for 404 errors updating the WebApp properties [2] Well, in 2010, thanks to Andrew Connell for pointing this out, Todd Carter blogs about what we now have in SPS 2010 here: http://todd-carter.com/post/2010/04/07/An-Expected-Error-Has-Occurred.aspx    [1] http://blogs.msdn.com/ketaanhs/archive/2009/03/16/moss-sharepoint-2007-custom-error-page-and-access-denied-page.aspx [2] http://blogs.msdn.com/jingmeili/archive/2007/04/08/how-to-create-your-own-custom-404-error-page-and-handle-redirect-in-sharepoint-2007-moss.aspx

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  • ASP.NET/IIS Fix: The 'Microsoft.Jet.OLEDB.4.0' provider is not registered on the local machine.

    - by Ken Cox [MVP]
    In my latest ASP.NET project, I refresh the sample data using an Excel spreadsheet from the client. After upgrading to Windows Server 2008 R2, I suddenly discovered this error: The 'Microsoft.Jet.OLEDB.4.0' provider is not registered on the local machine. The error message is totally bogus! The problem is that I’m running IIS on a 64-bit machine and the ol’ OLEDB thingy just isn’t up with the times. To fix it, go into the IIS Manager and find out which Application Pool the site is using. In my case...(read more)

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  • "Unable to locate package" errors for all software

    - by Mohammad Hosain Safari
    My apt-get doesn't install any programs. I try to install programs with apt-get install but always it shows same error: unable to locate package. For example I try to install the xbmc media center; here's what happens: $ sudo apt-get install xbmc Reading package lists... Done Building dependency tree Reading state information... Done E: Unable to locate package xbmc I have updated my package list with sudo apt-get update.

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  • OpenFilesView Displays All Open and Locked Files to Help Resolve In-Use Errors

    - by Jason Fitzpatrick
    Windows: You go to move a file and Windows throws up an “In Use” error. OpenFilesView shows you what application or system process is locking up the files you’re trying to move. Sometimes the culprit is obvious; if you go to move your media folder and you’ve got your media player open watching South Park then shutting down the media player is the obvious solution. Other times the culprit is less obvious; sometimes Windows processes and less-than-obvious applications are accessing your files in ways that aren’t apparent. The screenshot below showcases the “In Use” error: This is where OpenFilesView comes into play. Fire up the application to see a list of all active files on your system. The master list is a bit overwhelming (on our test system there were over 1200 open files) but you use the find command to drill down to specific file or folder names. Once you’ve found the locked file you can close the file handle, kill the process, or bring the process to the front (so you can examine the program, if possible, before terminating it). It’s much more efficient than rebooting in an attempt to shake the In-Use error. OpenFilesView is freeware and works on Windows XP through Windows 7. HTG Explains: Do You Really Need to Defrag Your PC? Use Amazon’s Barcode Scanner to Easily Buy Anything from Your Phone How To Migrate Windows 7 to a Solid State Drive

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  • Cisco 2811 router ignored input errors

    - by elbekay
    I've got a Cisco 2811 (AdvIPServices 12.4(25e)) that is showing input errors on both its interfaces, all the errors are of the ignored type. The counter for ignore errors is not increasing continuously, which made me think it would be happening in line with traffic bursts, but there really isn't a large amount of traffic running through it at any time. Both the router interfaces are connected to a 4900 (IPBase 12.2(54)) series switch. The only things I can see are: There is a slight mismatch in duplex/speed negotiation settings, one side is set to auto/auto and one full/auto, however they have negotiated fine. There have been a few fallbacks on the interface buffers, and some trims in the public buffers. Any suggestions for things to look at? I will be correcting the duplex neg settings, and might try a buffer tune, but I don't think it will help.

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  • Detecting 404 errors after a new site design

    - by James Crowley
    We recently re-designed Developer Fusion and as part of that we needed to ensure that any external links were not broken in the process. In order to monitor this, we used the awesome LogParser tool. All you need to do is open up a command prompt, navigate to the directory with your web site's log files in, and run a query like this: "c:\program files (x86)\log parser 2.2\logparser" "SELECT top 500 cs-uri-stem,count(*) FROM u_ex*.log WHERE sc-status=404 GROUP BY cs-uri-stem order by count(*) desc" -rtp:-1 topMissingUrls.txt And you've got a text file with the top 500 requested URLs that are returning 404. Simple!

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  • Troubleshooting Windows Blue Screen Errors

    The so-called ‘Blue Screen of Death’ has inspired fear in the hearts of mere mortals, but Systems Administrators are expected be capable of casually beating back this sinister beast. So imagine Ben Lye’s distress when he discovered that many aspiring SysAdmins had no structured approach to tackling the root of the problem. Setting out to remedy the situation, Ben lays out a simple 3-step plan, and dispenses some good advice.

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  • Diagnosing xmodmap errors

    - by intuited
    I'm getting this error when trying to use xmodmap to get rid of caps lock: $ xmodmap -e 'clear Lock' X Error of failed request: BadValue (integer parameter out of range for operation) Major opcode of failed request: 118 (X_SetModifierMapping) Value in failed request: 0x17 Serial number of failed request: 8 Current serial number in output stream: 8 I'm running xfce on Maverick "10.10" Meercat. This problem did not occur before I added the Keyboard Layouts applet to a panel; before doing that, I was able to run my xmodmap script to swap Esc and CapsLock: !Remap Caps_Lock as Escape remove Lock = Caps_Lock keysym Caps_Lock = Escape It may be relevant that I chose alt-capslock as the keyboard switch combo in the Keyboard Layouts preferences. I've had a similar problem before, on a different machine, running openbox. On that machine, this problem started when I upgraded to Lucid, and has persisted in Maverick (release 10.10). I reported a bug in xorg. However, it remains unclear whether it's really a problem with xorg, or if I'm just doing something wrong with my configuration. Have other people experienced this problem? Can someone shed some light on what's going on here? It seems there are quite a few layers involved, and I don't understand any of them particularly well, so any information would be helpful. update I've discovered that the problem is specifically triggered by adding the Canada layout variant "Multilingual" (ca-multix). If I instead add the variant "Multilingual (first part)", the problem does not occur. I think this will probably end up being a usable workaround, but I don't yet know what the difference between these variants is. I've filed a freedesktop issue, and am commenting on a related ubuntu issue.

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  • SQL Server Express and VS2010 Web Application .MDF file errors

    - by nannette
    I installed SQL Server 2008 as well as SQL Server Express 2008 on my new Windows 7 development environment, along with Visual Studio 2010. I could get SQL Server 2008 to work fine, but I could not use Express .MDF databases within sample web application projects without receiving the below error: Failed to generate a user instance of SQL Server due to a failure in starting the process for the user instance. The connection will be closed. For instance, I was creating an ASP.NET Web Application. When...(read more)

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  • Terminal Errors/Package Erros

    - by Bryan
    After running some updates a week ago or so, I've noticed that after any installations via the Ubuntu Software Center or any installed in the GUI have given an error message stating that there was a package error. Also any installations done through the terminal have given the E: Sub-process /usr/bin/dpkg returned an error code (1) message at the end of each install. Oddly, the software is still installed and seems to function properly. Is there any way to get rid of this? I've tried to run apt-get autoclean as recommended on another site, but this doesn't seem to work. I'm fairly new to Linux/Ubuntu, just FYI.

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  • Ogre3D, OGRE_NEW gives editor errors

    - by automaticoo
    Hello Game Developers, I am trying to get more experienced with OGRE3D and I am following the basic tutorials on the website. All the code samples compile just fine. The first time I encountered a "error" was in Basic Tutorurial 3. The code line where visual studio says something is not right is : mTerrainGroup = OGRE_NEW Ogre::TerrainGroup(mSceneMgr, Ogre::Terrain::ALIGN_X_Z, 513, 12000.0f); Visual studio compiles this line but it shows a ugly red line beneath it and on mouse hover it says "#define OGRE_NEW new (FILE, LINE, FUNCTION) Error: no instance of overloaded 'operator new' matches the argument list" or if I mouse hover over Ogre::TerrainGlobalOptions() it says "Error: expected a type specifier". I searched on google but couldn't find my answer. I got about a year c++ experience but that was mainly with the WinSock libarys. Thanks in advance.

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  • linux firefox flash debug: i don't get alerts when errors occur

    - by ufk
    Hello. I use firefox 3.6.13 on linux gentoo amd64 and flash 10.2 debug version, i also have firebug flashbug and flashfirebug installed. my problem is that whenever I run a flash application that encounters an error, the browser does not open an alert window. it makes it more difficult to debug applications because i need to make sure that the firebug window is always opened. the only way i can see the error is if i open the flash tab in firebug. is there a way to change this behavior ? i checked .xsession-errors and tried running firefox from console: these are the only errors the i see in the log and these errors do not appear when the flash app encounters an error which means they are not related: Gtk-Message: Failed to load module "canberra-gtk-module": libcanberra-gtk-module.so: cannot open shared object file: No such file or directory Gtk-Message: Failed to load module "gnomebreakpad": libgnomebreakpad.so: cannot open shared object file: No such file or directory thanks

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  • In Google webmaster tools, can a "soft 404" be triggered by the text on the page?

    - by Stephen Ostermiller
    I just ran across an error in Google Webmaster Tools that I have never seen before. I manage the website for my local community band (I play trombone). One of the pages on the site is a list of our upcoming performances. It is powered by a WordPress events plugin that uses a database of upcoming events that are entered through the administration interface. We just finished up our summer and fall concerts and our next performance will be our Christmas concert. I hadn't gotten around to adding that into the website yet, so there are no upcoming events shown on the page. In fact the text on the page says: No upcoming events listed under Performance. Check out past events for this category or view the full calendar. Then in Google Webmaster Tools, this page is showing up as a "soft 404": The page is returning a 200 status and Google is indicating that he 404 is "soft". I wouldn't have expected Googlebot to be as sophisticated to parse that particular sentence. Is Googlebot able to detect that the text on the page indicates that there is currently not content and then treat it as a 404 page because of that? If Google is treating this page as a soft 404 because of the text on the page, does that mean that like regular 404 pages, the page won't show up in search results?

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