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  • Simulate stochastic bipartite network based on trait values of species - in R

    - by Scott Chamberlain
    I would like to create bipartite networks in R. For example, if you have a data.frame of two types of species (that can only interact across species, not within species), and each species has a trait value (e.g., size of mouth in the predator allows who gets to eat which prey species), how do we simulate a network based on the traits of the species (that is, two species can only interact if their traits overlap in values for instance)? UPDATE: Here is a minimal example of what I am trying to do. 1) create phylogenetic tree; 2) simulate traits on the phylogeny; 3) create networks based on species trait values. # packages install.packages(c("ape","phytools")) library(ape); library(phytools) # Make phylogenetic trees tree_predator <- rcoal(10) tree_prey <- rcoal(10) # Simulate traits on each tree trait_predator <- fastBM(tree_predator) trait_prey <- fastBM(tree_prey) # Create network of predator and prey ## This is the part I can't do yet. I want to create bipartite networks, where ## predator and prey interact based on certain crriteria. For example, predator ## species A and prey species B only interact if their body size ratio is ## greater than X.

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  • Python programming - Windows focus and program process

    - by Zack
    I'm working on a python program that will automatically combine sets of files based on their names. Being a newbie, I wasn't quite sure how to go about it, so I decided to just brute force it with the win32api. So I'm attempting to do everything with virtual keys. So I run the script, it selects the top file (after arranging the by name), then sends a right click command,selects 'combine as adobe PDF', and then have it push enter. This launched the Acrobat combine window, where I send another 'enter' command. The here's where I hit the problem. The folder where I'm converting these things loses focus and I'm unsure how to get it back. Sending alt+tab commands seems somewhat unreliable. It sometimes switches to the wrong thing. A much bigger issue for me.. Different combination of files take different times to combine. though I haven't gotten this far in my code, my plan was to set some arbitrarily long time.sleep() command before it finally sent the last "enter" command to finish and confirm the file name completing the combination process. Is there a way to monitor another programs progress? Is there a way to have python not execute anymore code until something else has finished?

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  • a question in NS c programming

    - by bahar
    Hi I added a new patch to my NS and I've seen thise two errors. Does anyone Know what I can do? error: specialization of 'bool std::less<_Tp::operator()(const _Tp&, const _Tp&) const [with _Tp = _AlgorithmTime]' in different namespace from definition of 'bool std::less<_Tp::operator()(const _Tp&, const _Tp&) const [with _Tp = _AlgorithmTime]' and the errors are from this code typedef struct _AlgorithmTime { // Round. int round; // Fase. int fase; // Valore massimo di fase. int last_fase; public: _AlgorithmTime() { round = 0; fase = 0; last_fase = 0; } // Costruttore. _AlgorithmTime(int r, int f, int l) { round = r; fase = f; last_fase = l; } // Costruttore. _AlgorithmTime(const _AlgorithmTime & t) { round = t.round; fase = t.fase; last_fase = t.last_fase; } // Operatore di uguaglianza. bool operator== (struct _AlgorithmTime & t) { return ((t.fase == fase) && (t.round == round)); } // Operatore minore. bool operator < (struct _AlgorithmTime & t) { if (round < t.round) return true; if (round > t.round) return false; if (fase < t.fase) return true; return false; } // Operatore maggiore. bool operator > (struct _AlgorithmTime & t) { if (round > t.round) return true; if (round < t.round) return false; if (fase > t.fase) return true; return false; } void operator++ () { if (fase == last_fase) { round++; fase = 0; return; } fase++; } void operator-- () { if (fase == 0) { round--; fase = last_fase; return; } fase--; } }AlgorithmTime; template< bool std::less::operator()(const AlgorithmTime & t1, const AlgorithmTime & t2)const { if (t1.round < t2.round) return true; if (t1.round t2.round) return false; if (t1.fase < t2.fase) return true; return false; } Thanks

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  • solaris + match the network device name according to IP address

    - by yael
    how to find the device name as ( e1000g2 , e1000g3 , etc ) according to his IP address on Solaris machine for example ifconfig -a | grep 10.106.134.133 inet 10.106.134.133 netmask ffffff00 broadcast 10.106.134.255 ifconfig with grep command view only the line with the IP address , and the device name appears before the IP address so my target is to match the device name according to the IP address on Solaris machine , and then insert the device name in to parameter ( ksh ) please advice? full example: from ifconfig -a ( I get the IP and device name , what I need is to find the device name according to IP address , and insert the device name in to parameter ) e1000g2: flags=201000843<UP,BROADCAST,RUNNING,MULTICAST,IPv4,CoS> mtu 1500 inet 10.106.134.133 netmask ffffff00 broadcast 10.106.134.255

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  • Interview Programming Questions - In house Exam

    - by David McGraw
    I have a company that would like to bring me in to serve me an hour long exam. No resources other than a pencil and paper. I really couldn't get any sort of feedback on the type of exam (implementation or generic) beside that it would test a few specific areas. Have you done anything like this? What sort of questions did they ask? What's a good way to prepare? I'll probably go in a couple weeks before school starts back up. A time sensitive exam structure is a weak point for me, so what should I absolutely focus down on? If they like the exam, that's when I'll get a face-to-face meeting. An advance thanks goes to everybody who provide their time.

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  • How to filter and intercept Linux packets by using net_dev_add() API?

    - by Khajavi
    I'm writing ethernet network driver for linux. I want to receive packets, edit and resend them. I know how to edit the packet in packet_interceptor function, but how can I drop incoming packets in this function?? #include <linux/netdevice.h> #include <linux/skbuff.h> #include <linux/ip.h> #include <net/sock.h> struct packet_type my_proto; int packet_interceptor(struct sk_buff *skb, struct net_device *dev, struct packet_type *pt, struct net_device *orig_dev) { // I dont want certain packets go to upper in net_devices for further processing. // How can I drop sk_buff here?! return 0; } static int hello_init( void ) { printk(KERN_INFO "Hello, world!\n"); my_proto.type = htons(ETH_P_ALL); my_proto.dev = NULL; my_proto.func = packet_interceptor; dev_add_pack(&my_proto); return 0; } static void hello_exit(void) { dev_remove_pack(&my_proto); printk(KERN_INFO "Bye, world\n"); } module_init(hello_init); module_exit(hello_exit);

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  • Conditional interface programming for iPad?

    - by Fyrian
    Hi everyone! I'm working on an app for the iPad and am a little over my head with one issue. Is it possible to build an app for iPad that uses a function to control which interface layout is displayed? Something like "if these parameters are met, use XIB file "a" else use XIB file "b". I know that's not in any kind of legitimate format, but you get the idea. If this is possible, does anyone know of any tutorials on how to do it or sample code I could look at? Thanks!

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  • Why use constants in programming?

    - by Adam N
    I've just been going back over a bit of C studying using Ivor Horton's Beginning C book. I got to the bit about declaring constants which seems to get mixed up with variables in the same sentence. Just to clarify, what is the difference in specifying constants and variables in C, and really, when do you need to use a constant instead of a variable? I know folks say to use a constant when the information doesn't change during program execution but I can't really think of a time when a variable couldn't be used instead. Thanks

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  • A Question about dereferencing pointer to incomplete type In C programming

    - by user552279
    Hi, can you explain this error for me? Blockquote /////////////////////////////// In my A.h file: struct TreeNode; struct TreeHead; typedef struct TreeNode * Node; typedef struct TreeHead * Head; /////////////////////////////// In my A.c file: struct TreeNode { char* theData; Node Left; Node Right; } ; struct TreeHead{ int counter; char type; Node Root; }; Head Initialisation() { Head treeHead; treeHead = malloc(sizeof (struct TreeHead)); treeHead-Root = malloc(sizeof (struct TreeNode)); return treeHead; } /////////////////////////////// In my Main.c file: Head head; Node tree; int choose =5; head = Initialisation(); (head-Root) = tree; //When compiling, this line has an error: error: dereferencing pointer to incomplete type Blockquote haed-Root will return a Node pointer, tree is also a Node pointer. So why error is dereferencing pointer to "incomplete" type?

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  • Network tries to reindentify itself now and then

    - by Don Young
    When the computer starts up it connects itself to the router (ZTE 4G router) automatically, but after I have surfed the web for a while, it tries to identify itself, meaning you get that little blue circle next to the little screen at the corner. When browsing it does not cause any problems, but if I'm streaming a video the video will then stop, I'll have to refresh the page to make the video start again. And if I'm playing a game, LoL for example, the game will freeze for about 2 seconds then continue again (due to lost connection to the internet). I have no virus on my computer, although I had before. I have reset my router, restarted my computer, updated my ethernet driver, checked so that the IPv4 is set on automatic and tried different router channels. I have had this router for a few months and the problem just started recently. Here is the ipconfig screen:

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  • Network config / gear question

    - by mcgee1234
    I have been tasked with setting up a fairly straightforward rack in a data center (we do not even need a whole rack, but this is the smallest allotment available). In a nutshell, 4 to 6 servers need to be able to reach 2 (maybe 3) vendors. The servers needs to be reachable over the internet. A little more detail - the networks the servers need to reach are inside of the data center, and are "trusted". Connections to these networks will be achieved through intra data center cross connects. It is kind of like a manufacturing line where we receive data from one vendor (burst-able up to 200 Mbits), churn through it on the servers, and then send out data to another vendor (bursts up to 20 Mbits). This series of events is very latency sensitive, so much so that it is common practice not to use NAT or a firewall on these segments (or so I hear). To reach the servers over the internet, I plan to use a site to site VPN. (This part is only relevant as far as hardware selection goes). I have 2 configurations in mind: Cisco 2911 (2921) (with the additional wan ports module) and a layer 2 switch - in this scenario, I would use the router also for VPN. Cisco 3560 layer 3 switch to interconnect the networks inside of the data center and an ASA 5510 (which is total overkill, but the 5505 is not rack mountable) as a firewall for the Wan side (internet) and VPN. I envision the setup to be as follows: Internet - ASA - 3560 Vendors - 3560 - Servers The general idea is that the ASA acts as a firewall and VPN device and the 3560 does all the heavy lifting. The first is a fairly traditional setup but my concern is performance. The second is somewhat unorthodox in that the vendors are directly connected to the layer 3 switch without passing through a firewall. Based on my understanding however, a layer 3 switch will perform substantially better as it will do hardware (ASIC) vs. software switching. (Note that number 2 is a little over the budget, but not unworkable (double negative, ugh)) Since this is my first time dealing with a data center, I am not sure what the IP space is going to look like. I suspect I will retain a block(s) of public IPs, vlan them to individual interfaces for the vendor connections and the servers (which will not reachable from the wan side of course) and setup routing on the switch. So here are my questionss: Is there a substantial performance difference between 1 and 2, i.e. hardware based switching on a layer 3 vs a software base on the 2911? I have trolled the internet and found a lot of Cisco literature, but nothing that I could really use to get a good handle. The vendors we connect to are secure and trusted (famous last words) and as I understand it, it is common practice not to NAT or firewall these connections (because of the aforementioned latency sensitivity). But what what kind of latency are we really talking about if I push the data through a router (or even ASA for that matter)? For our purposes, 5 ms will not kill us, 20 or 30 can be very costly. Others measure in microseconds, but they are out of our league. Is there any issues with using public IPs on a layer 3 switch? I am certainly not married to either of these configs, and I am totally open to any ideas. My knowledge (and I use the term loosely) is largely from books so I welcome any advice / insight. Thanks in advance.

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  • Creating a network adapter - how hard is it?

    - by Vilx-
    I'm interested in building a little (commercial) device on top of Arduino. I want it to be able to interface with network. Network as in standard Ethernet, Cat5, RJ-45, etc. I know that there is an Ethernet Shield, but it costs even more than the Arduino itself, and it's pretty big. Naturally, I want my device to be as small and as cheap as possible. So I'm thinking about recreating an Ethernet module myself. The problem is - I haven't got any experience with Ethernet, nor do I have a good idea where to start looking. Thus I can't even say if my ideas are feasible. Ultimately I would like the device to have three ports - one for incoming signal, two for outgoing, so the device is essentially a little switch where it is plugged in itself as well. The switching capabilities need not be very fast - the volume of data will be low. 10Mbit is more than enough, can be even slower. If that is not possible, a single port for controlling the device itself will also do. Another possibility I'm considering is power line communications - sending information through power lines. That's another area I've no experience with. What hardware should I be looking at, and where can I find information about the necessary software? So - can anyone tell me if these ideas are feasible, and if yes - where should I start looking?

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  • Event driven programming in perl?

    - by TheGNUGuy
    Hey everyone, I'm trying to make a jabber bot and I am having trouble keeping it running while waiting for messages. How do I get my script to continuously run? I have tried calling a subroutine that has a while loop that I , in theory, have set up to check for any messages and react accordingly but my script isn't behaving that way. Here is my source: http://pastebin.com/03Habbvh

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  • c++ programming- Tryin to get a number within an array that is twice the average

    - by max
    i have been assigned to set up an array with points. I am told to get the maximum value, average, nd within this same array, if any point in the array is twice the average, i should cout an "outlier." So far i have gotten the average and maximum numbers in the array. but i am unable to set the programme to cout the outlier. Instead it gives me a multiple of the average. pls help! here is the programme; int main() { const int max = 10; int ary[max]={4, 32, 9, 7, 14, 12, 13, 17, 19, 18}; int i,maxv; double out,sum=0; double av; maxv= ary[0]; for(i=0; i } cout<<"maximum value: "< for(i=0; i sum = sum + ary[i]; av = sum / max; } cout<<"average: "< out = av * 2; if(ary[i]out) { cout<<"outlier: "< return 0; }

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  • Network Performance issue

    - by qubemarker
    We have three Ubuntu 10.04 servers. One server is a storage server and the other two servers are configured as clients. The storage server has a good amount of capacity and it is integrated with windows Active directory server for Authentication. I am uploading some video files from both clients to the server and when I am uploading data from any one client alone I get about 26 MB/s data transfer rate. When I upload data from both the clients simultaneously I am only getting about 8 MB/s from each client. I have gigabit ethernet cards in all of the servers and a L2 Managed gigabit switch for connectivity. I don’t know why the data transfer rate is decreasing so much in simultaneous read and write. I have tried all of the TCP stack related settings suggested here. Can any assist with getting better read/write performance out of this setup? Any help is appreciated.

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  • Seeking recommendations on resolving sporadic network connectivity latency for Notes client

    - by Russell Maher
    I have Domino servers in geographically disperse data centers in the U.S. Sometimes when I open an NSF on one of those servers the connection times out then when I open the NSF again it connects immediately. This has been going on for years and during that time I have upgraded and changed my own internet connection and moved servers to different data centers. Of course I have direct connection documents using fixed IP addresses. When I do a Notes client Trace nothing is out of the ordinary. My business partner experiences the same thing from an entirely different city and different ISP but to the same servers. Never have any trouble connecting to the HTTP server, just over port 1352. Does anyone have any recommendations on a process to determine what is causing this problem?

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  • Home router for higher network loads

    - by Zizzencs
    I'm trying to find a replacement for my ASUS WL500GP router. Some constraints: my ISP now provides 120 Mbit bandwidth - the router must be able to handle it I have 3 computers and a laptop at home - the router must have at least 4 LAN ports and the WAN port I need to be able to do the following in parallel: use bittorrent with ~1000 connections transfer files from one home computer to another at high speed access one home computer from my workplace I don't really need wireless I don't really want two boxes to serve all these purposes. So I was searching for a router with 1 Gbit ports, jumbo frame support and good reviews, but haven't really found a promising candidate so far. Any suggestions?

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  • How does Object Oriented Programming work?

    - by venom
    Hello, I am not sure about some things in OOP. If I have Class1, which has some private field, for example private Field field1, and make getField1 () { return field1; } then I have some class with constructor public Class2 (Field field) { someMethod(field); } And then I call constructor of Class2 in Class3 like: Class2 cl = new Class2(instanceOfClass1.getField1()); And now the question: Am I working with field1 of instanceOfClass1 in someMethod(field)?

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  • Programming Windows Cluster resource DLLs using Delphi

    - by kaeff
    I wonder whether there's a way to program a resource DLL for Windows Clusters in Delphi. I want to write a program that observes cluster state changes. Judging from the MSDN API reference, all relevant functions are located in the ClusAPI.h and ResAPI.h headers, but unfortunately it seems as if they haven't been ported yet and HeaderConv seems to fail on them. Does anyone has experience in doing such a thing?

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