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  • What do you think is the best language for Bioinformatics?

    - by Ben Fossen
    I have done a couple research jobs in Bio-informatics and I have used Matlab for them. Matlab had a lot of powerful tools and was easy to use. I did thinks with genome sequencing and predicting metabolic pathways. I am wondering what other people think is best? or there might not be one specific language but a few that lend themselves best to Bio-informatics work that is math heavy and deals with a large amount of data.

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  • PEAR/PHPUnit installation on shared hosting

    - by Sergei Morozov
    I’ve installed a local (per-account) PEAR instance on shared web-hosting. After that I’ve installed PHPUnit. It doesn’t work in command-line mode because PHPUnit classes are not under default include_path that is ".:/usr/local/lib/php". The same, I think, would happen with local phing and other command-line tools installed via PEAR. Is there a way to specify per-account include_path value that will contain my local PEAR path "~/pear/php"?

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  • software for sorting algorithms animation

    - by Dinesh
    I am planning on working on an interactive application that graphically animates the various sorting algorithms in action. Most of the examples of this kind on the web seems to be using java applets. I was wondering what other software/tools would be well suited to develop an application like this. It may or may not be web-based. Any help would be greatly appreciated. Thanks Dinesh

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  • What's a clean way to break up a DataTable into chunks of a fixed size with Linq?

    - by Michael Haren
    Update: Here's a similar question Suppose I have a DataTable with a few thousand DataRows in it. I'd like to break up the table into chunks of smaller rows for processing. I thought C#3's improved ability to work with data might help. This is the skeleton I have so far: DataTable Table = GetTonsOfData(); // Chunks should be any IEnumerable<Chunk> type var Chunks = ChunkifyTableIntoSmallerChunksSomehow; // ** help here! ** foreach(var Chunk in Chunks) { // Chunk should be any IEnumerable<DataRow> type ProcessChunk(Chunk); } Any suggestions on what should replace ChunkifyTableIntoSmallerChunksSomehow? I'm really interested in how someone would do this with access C#3 tools. If attempting to apply these tools is inappropriate, please explain! Update 3 (revised chunking as I really want tables, not ienumerables; going with an extension method--thanks Jacob): Final implementation: Extension method to handle the chunking: public static class HarenExtensions { public static IEnumerable<DataTable> Chunkify(this DataTable table, int chunkSize) { for (int i = 0; i < table.Rows.Count; i += chunkSize) { DataTable Chunk = table.Clone(); foreach (DataRow Row in table.Select().Skip(i).Take(chunkSize)) { Chunk.ImportRow(Row); } yield return Chunk; } } } Example consumer of that extension method, with sample output from an ad hoc test: class Program { static void Main(string[] args) { DataTable Table = GetTonsOfData(); foreach (DataTable Chunk in Table.Chunkify(100)) { Console.WriteLine("{0} - {1}", Chunk.Rows[0][0], Chunk.Rows[Chunk.Rows.Count - 1][0]); } Console.ReadLine(); } static DataTable GetTonsOfData() { DataTable Table = new DataTable(); Table.Columns.Add(new DataColumn()); for (int i = 0; i < 1000; i++) { DataRow Row = Table.NewRow(); Row[0] = i; Table.Rows.Add(Row); } return Table; } }

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  • UNIX find for finding file names NOT ending in specific extensions?

    - by Cristi Diaconescu
    Is there a simple way to recursively find all files in a directory hierarchy, that do not end in a list of extensions? E.g. all files that are not *.dll or *.exe UNIX/GNU find, powerful as it is, doesn't seem to have an exclude mode (or I'm missing it), and I've always found it hard to use regular expressions to find things that don't match a particular expression. I'm in a Windows environment (using the GnuWin32 port of most GNU tools), so I'm equally open for Windows-only solutions.

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  • Usage of Maven (and open source in general) in high governance and risk-averse large organizations (

    - by bart
    Does anyone have any good stories of these kinds of organizations being open to using open source (such as tools like Maven etc). Many staff I've encountered have little or no exposure to open source/systems and open source is treated with great suspicion. Some reasons given for this are lack of support and robustness, which is ironic given the number of end-of-life unsupported vendor products that are in production. Bonus points for any success stories where you've seen open source go into orgs like this and have a real benefit!

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  • how do you monitor your lamp server?

    - by ajsie
    i wonder how one can monitor a lamp server (ubuntu) on production. are there any standard tools for this to watch the server performance/load in realtime via the browser? how mysql, linux, apache etc are doing... what is best practice regarding this? any tutorials would be great. thanks!

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  • How to develop good debugging skills? [closed]

    - by Sasha
    Possible Duplicate: Debugging techniques How can I improve my debugging skills? I am thinking in the context of C++ under UNIX, C#, and in general. Please suggest how I can improve in these areas in terms of: Approaches to take, where to start, and how to proceed. Tools to use, and how use them effectively. Recommended material (books, articles) to read and lectures to watch.

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  • How to identify what locked PL/SQL package (Oracle 10.0.4.2)?

    - by Roman Kagan
    I was trying to recompile PL/SQL package and no avail. because something obtained the lock and that wasn't released for long time. As soon as I kill all sessions I was able to recompile but encounter the same behavior (i.e. locked package) and I wonder what tools are avail to identify what could of obtain it and never release it? This happen on (Oracle 10.0.4.2). Greatly appreciate for your help.

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  • How can I make a product showcase in Silverlight?

    - by John McClane
    I can place a couple of buttons in Silverlight, but I'm not that experienced with the Silverlight tools and capabilities. What do you think I should use to create something like this? The control would have to pull and ID from the database and according to that place an image asociated with the record. I need it to be animated with some crispy movement. How can I achieve this?

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  • How and why do I set up a C# build machine?

    - by mmr
    Hi all, I'm working with a small (4 person) development team on a C# project. I've proposed setting up a build machine which will do nightly builds and tests of the project, because I understand that this is a Good Thing. Trouble is, we don't have a whole lot of budget here, so I have to justify the expense to the powers that be. So I want to know: What kind of tools/licenses will I need? Right now, we use Visual Studio and Smart Assembly to build, and Perforce for source control. Will I need something else, or is there an equivalent of a cron job for running automated scripts? What, exactly, will this get me, other than an indication of a broken build? Should I set up test projects in this solution (sln file) that will be run by these scripts, so I can have particular functions tested? We have, at the moment, two such tests, because we haven't had the time (or frankly, the experience) to make good unit tests. What kind of hardware will I need for this? Once a build has been finished and tested, is it a common practice to put that build up on an ftp site or have some other way for internal access? The idea is that this machine makes the build, and we all go to it, but can make debug builds if we have to. How often should we make this kind of build? How is space managed? If we make nightly builds, should we keep around all the old builds, or start to ditch them after about a week or so? Is there anything else I'm not seeing here? I realize that this is a very large topic, and I'm just starting out. I couldn't find a duplicate of this question here, and if there's a book out there I should just get, please let me know. EDIT: I finally got it to work! Hudson is completely fantastic, and FxCop is showing that some features we thought were implemented were actually incomplete. We also had to change the installer type from Old-And-Busted vdproj to New Hotness WiX. Basically, for those who are paying attention, if you can run your build from the command line, then you can put it into hudson. Making the build run from the command line via MSBuild is a useful exercise in itself, because it forces your tools to be current.

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  • How to automate building and deploying a BPEL application

    - by Juan Manuel Formoso
    I need to automate the building and deployment of (several) BPEL applications to a weblogic server. I now do it using jDeveloper 11g, but I guess there should be some command line tools to do it. (I come from a Microsoft /.NET / Visual Studio background, and I can automate the deployment of my .NET applications using the command line and msbuild) Does anyone know how to do that via the command line?

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  • Flash like animation editing and container format for OpenGL environment?

    - by tbarbe
    Are there ANY tools that lets an animator / designer create scripted animations that can export to an OpenGL compatible format -- that are similar to the timeline editing in Flash or After Effects? Does OpenGL ES have some kind of animation playback or container format? ( is there something similar to .swf for OpenGL? ) Im looking for something that lets a designer / animator do his work with a timeline and in a traditional animation environment... meanwhile still having integration with OpenGL.

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  • PostgreSQL or MS SQL Server?

    - by mmiika
    I'm considering using PostgreSQL with a .Net web app. Basically 3 reasons: Mature Geo Queries Small footprint + Linux Price I'm wondering a bit about tools though, SQL Server Profiler and query plans and performance monitors have been helpful. How is this world with Postgres? Some other things I should consider? Edit: Will most likely use NHibernate as ORM

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  • How to implement Scrum?

    - by Kaan
    We're trying to switch to Scrum as our development process but we're not sure how to implement it in the best way possible. We also don't want to pay for expensive software tools until we get scrum working and get positive results. How can we implement scrum using a whiteboard without asking people to write down their time on the board and then also input into our own time tracking software? What kind of methodologies do you use?

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  • The right way to develop against of PayPal platform

    - by zshamrock
    What is the right/recommended way to develop against of PayPal platform: Use the New PayPal SDK (https://www.x.com/developers/paypal/documentation-tools/paypal-sdk-index) Use the legacy PayPal SDK (which is quite old right now) Just send raw HTTPS requests following NVP protocol (in the end they are just REST-like API), and do not depend on any official API (just depend on the official NVP protocol description) Which one is considered the right way to go?

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  • Where is IIS Out-Of-Process in Windows Server 2008?

    - by user303526
    Hi, I've installed all the components of IIS 7 on a Windows Server 2008 box but I don't see IIS Out-Of-Process Pooled Applications in Component Services. How do I get it ? I have a .dll file that I want to drag it here. I have IIS 6 locally and it has IIS Out-Of-Process Pooled Applications under Control Panel - Administrative Tools - Component Services - Computers - My Computer - COM+ Applications. But the same is missing in Windows Server 2008. Thanks, Nandagopal

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  • Targeting Android with Scala 2.8 Trunk builds

    - by Kevin Wright
    The definitive reference for using Scala on android seems to be here: http://www.scala-lang.org/node/160 Unfortunately, all the references on using scala with android are based around Scala 2.7 and refer to a custom build android-library.jar, with a couple of cryptic references suggesting that this custom build isn't needed for later versions of android (I'm using 2.1 / API v7) So... What are the steps needed to use Scala 2.8 in an android project? Preferably using eclipse and the Android tools that Google supplies for that IDE.

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