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• Which revision of html5lib is stable?

  - by Mat

  html5lib notes that it's latest release (0.11) is somewhat old. Using the Python portion, I have recursion problems as noted in Issue 70 and Issue 59 but can't find a recent Mercurial revision that is stable. The latest tip is no good, I got the following error from python setup.py install: byte-compiling build/bdist.linux-x86_64/egg/html5lib/treewalkers/_base.py to _base.pyc File "build/bdist.linux-x86_64/egg/html5lib/treewalkers/_base.py", line 40 "data": []} ^ SyntaxError: invalid syntax And I get the following errors at runtime: soup = parser.parse(page.read()) File "build/bdist.linux-x86_64/egg/html5lib/html5parser.py", line 165, in parse File "build/bdist.linux-x86_64/egg/html5lib/html5parser.py", line 144, in _parse File "build/bdist.linux-x86_64/egg/html5lib/html5parser.py", line 454, in processDoctype TypeError: insertDoctype() takes exactly 4 arguments (2 given) I'm using it on Python 2.5.2 with lxml and BeautifulSoup.

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• Issue reading packets from a pcap file. dpkt module. What gives?

  - by Chris

  I am running the following test script to try to read packets from a sample .pcap file I have downloaded. It won't seem to run. I have all of the modules, but no examples seem to be running. import socket import dpkt import sys pcapReader = dpkt.pcap.Reader(file("test1.pcap", "rb")) for ts, data in pcapReader: ether = dpkt.ethernet.Ethernet(data) if ether.type != dpkt.ethernet.ETH_TYPE_IP: raise ip = ether.data src = socket.inet_ntoa(ip.src) dst = socket.inet_ntoa(ip.dst) print "%s -> %s" % (src, dst) For some reason, this is not being interpreted properly. When running it, I get KeyError: 138 module body in test.py at line 4 function __init__ in pcap.py at line 105 Program exited. Why is this? What's wrong?

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• Interspire to Magento migration

  - by patrikas

  Hello, I recently started with Magento and decided to migrate Interspire shopping cart I already made time ago to it. At first look Magento seems a very huge beast - lots of options, maybe lack of simplicity resulting in some performance loss. I've got user guide from which I am not getting much of benefit since there're just descriptions of very ordinary tasks that I could easily discover myself by poking around frontend/backend. So my first tasks are category and product export. Interspire seems to be exporting ONLY products in three available formats: Default MYOB Peachtree accounting I did some searching on Magento's product importing and found a blog post which says that I should create a few sample products with all the necessary attributes myself and then start the import. But what should I do with categories ? Is it possible to import them or instruct Magento to automatically create categories when importing product file if unknown category is encountered ? Thanks

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• SQL Alchemy related Objects Error

  - by alex

  from sqlalchemy.orm import relation, backref from sqlalchemy import Table, Column, Integer, String, MetaData, ForeignKey, Date, Sequence from sqlalchemy.ext.declarative import declarative_base Base = declarative_base() class GUI_SCENARIO(Base): __tablename__ = 'GUI_SCENARIO' Scenario_ID = Column(Integer, primary_key=True) Definition_Date = Column(Date) guiScenarioDefinition = relation('GUI_SCENARIO_DEFINITION', order_by='GUI_SCENARIO_DEFINITION.Scenario_Definition_ID', backref='guiScenario') def __init__(self, Scenario_ID=None, Definition_Date=None): self.Scenario_ID = Scenario_ID self.Definition_Date = Definition_Date class GUI_SCENARIO_DEFINITION(Base): __tablename__='GUI_SCENARIO_DEFINITION' Scenario_Definition_ID = Column(Integer, Sequence('Scenario_Definition_ID_SEQ'), primary_key=True) Scenario_FK = Column(Integer, ForeignKey('GUI_SCENARIO.Scenario_ID')) Definition_Date=Column(Date) guiScenario = relation(GUI_SCENARIO, backref=backref('guiScenarioDefinition', order_by=Scenario_Definition_ID)) def __init__(self, Scenario_FK, Definition_Date): self.Scenario_FK = Scenario_FK self.Definition_Date = Definition_Date guiScenario = relation(GUI_SCENARIO, backref=backref('guiScenarioDefinition', order_by=Scenario_Definition_ID)) tableNameScenario = "GUI_SCENARIO" scenarioClass = getattr(MappingTablesScenario, tableNameScenario) tableScenario = Table(tableNameScenario, meta, autoload=True) mapper(scenarioClass, tableScenario) scenarioName = scenarioDefinition.name scenarioDefinitionDate = datetime.today() newScenario = MappingTablesScenario.GUI_SCENARIO(scenarioName, scenarioDefinitionDate) print newScenario.guiScenarioDefinition If I try to get the objects related to a scenarioObject, I always get this error: AttributeError: 'GUI_SCENARIO' object has no attribute 'guiScenarioDefinition' Does anyone know, why I get this error?

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• large amount of data in many text files - how to process?

  - by Stephen

  Hi, I have large amounts of data (a few terabytes) and accumulating... They are contained in many tab-delimited flat text files (each about 30MB). Most of the task involves reading the data and aggregating (summing/averaging + additional transformations) over observations/rows based on a series of predicate statements, and then saving the output as text, HDF5, or SQLite files, etc. I normally use R for such tasks but I fear this may be a bit large. Some candidate solutions are to 1) write the whole thing in C (or Fortran) 2) import the files (tables) into a relational database directly and then pull off chunks in R or Python (some of the transformations are not amenable for pure SQL solutions) 3) write the whole thing in Python Would (3) be a bad idea? I know you can wrap C routines in Python but in this case since there isn't anything computationally prohibitive (e.g., optimization routines that require many iterative calculations), I think I/O may be as much of a bottleneck as the computation itself. Do you have any recommendations on further considerations or suggestions? Thanks

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• Problem getting started with GeoDjango

  - by akv

  As soon as I add "from django.contrib.gis.db import models" instead of "from django.db import models", Django stops recognizing the app and gives this error: Error: App with label location could not be found. Are you sure your INSTALLED_APPS setting is correct? The error goes away as soon as I comment out "from django.contrib.gis.db import models"... I have added "django.contrib.gis" and the "location" app to the INSTALLED_APPS setting correctly. Any clues why this is happening? I am running using Django v1.1.1 final, on my windows laptop.

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• Django ValueError at /admin/

  - by mjaz

  Hello, I am running Django with mod_python on a Red Hat Linux box in production. A little while ago, for a reason unknown to me, the admin stopped working, throwing a 500 error. The error is as follows: ValueError at /admin/ Empty module name Request Method: GET Exception Type: ValueError Exception Value: Empty module name Exception Location: /usr/local/lib/python2.6/site-packages/django/utils/importlib.py in import_module, line 35 Python Executable: /usr/bin/python Python Version: 2.6.2 Has anyone encountered this before? I have absolutely no idea how to fix this problem. Thank you for any help.

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• TypeError: unbound method make_request() must be called with XX instance, but how?

  - by Dave

  Running the code below I get E TypeError: unbound method make_request() must be called with A instance as first argument (got str instance instead) I dont want to set make_request method as static, I want to call it from an instance of an object. The example http://pytest.org/latest/fixture.html#fixture-function # content of ./test_smtpsimple.py import pytest @pytest.fixture def smtp(): import smtplib return smtplib.SMTP("merlinux.eu") def test_ehlo(smtp): response, msg = smtp.ehlo() assert response == 250 assert "merlinux" in msg assert 0 # for demo purposes My code """ """ import pytest class A(object): """ """ def __init__(self, name ): """ """ self._prop1 = [name] @property def prop1(self): return self._prop1 @prop1.setter def prop1(self, arguments): self._prop1 = arguments def make_request(self, sex): return 'result' def __call__(self): return self @pytest.fixture() def myfixture(): """ """ A('BigDave') return A def test_validateA(myfixture): result = myfixture.make_request('male') assert result =='result'

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• How can I deal with No module named edit.editor ?

  - by Tomas Pajonk

  I am trying to follow the WingIDE tutorial on creating scripts in the IDE. This following example scripts always throws an error: import wingapi def test_script(test_str): app = wingapi.gApplication v = "Product info is: " + str(app.GetProductInfo()) v += "\nAnd you typed: %s" % test_str wingapi.gApplication.ShowMessageDialog("Test Message", v) Traceback (most recent call last): File "C:\Wing-pi\Scripts\test.py", line 1, in import wingapi File "C:\Program Files\Development\Wing IDE 3.1\bin\wingapi.py", line 18, in import edit.editor ImportError: No module named edit.editor Process terminated with an exit code of 1 I am launching the script in the Wing IDE as suggested by someone, but I keep getting the same result.

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• Printing elements out of list

  - by chavanak

  Hi, I have a certain check to be done and if the check satisfies, I want the result to be printed. Below is the code: import string import codecs import sys y=sys.argv[1] list_1=[] f=1.0 x=0.05 write_in = open ("new_file.txt", "w") write_in_1 = open ("new_file_1.txt", "w") ligand_file=open( y, "r" ) #Open the receptor.txt file ligand_lines=ligand_file.readlines() # Read all the lines into the array ligand_lines=map( string.strip, ligand_lines ) #Remove the newline character from all the pdb file names ligand_file.close() ligand_file=open( "unique_count_c_from_ac.txt", "r" ) #Open the receptor.txt file ligand_lines_1=ligand_file.readlines() # Read all the lines into the array ligand_lines_1=map( string.strip, ligand_lines_1 ) #Remove the newline character from all the pdb file names ligand_file.close() s=[] for i in ligand_lines: for j in ligand_lines_1: j = j.split() if i == j[1]: print j The above code works great but when I print j, it prints like ['351', '342'] but I am expecting to get 351 342 (with one space in between). Since it is more of a python question, I have not included the input files (basically they are just numbers). Can anyone help me? Cheers, Chavanak

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• OpenType programming

  - by Sorush Rabiee

  Hi all Recently i asked two questions (1 and 2) about using OpenType features in programs written by python and .net languages, but didn't get an answer. i realized there is no way to change text rendering engines of operating systems, or force them to use OpenType. so now want to implement my own. such a program that: provides a text engine that receives glyph shapes from otf and ttf files and renders them in sequence of glyphs in text. generates all of OTL features can be used in other parts of applications like controls and components of .NET or python GUI libraries. if python and .net languages are not suitable in this situation, aware me about other programming languages or tools. comments and answers about text rendering system of common Operating Systems, or designing text engines compatible with unicode 5.02 protocol are welcomed.

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• Graphing a line and scatter points using Matplotlib?

  - by Patrick O'Doherty

  Hi guys I'm using matplotlib at the moment to try and visualise some data I am working on. I'm trying to plot around 6500 points and the line y = x on the same graph but am having some trouble in doing so. I can only seem to get the points to render and not the line itself. I know matplotlib doesn't plot equations as such rather just a set of points so I'm trying to use and identical set of points for x and y co-ordinates to produce the line. The following is my code from matplotlib import pyplot import numpy from pymongo import * class Store(object): """docstring for Store""" def __init__(self): super(Store, self).__init__() c = Connection() ucd = c.ucd self.tweets = ucd.tweets def fetch(self): x = [] y = [] for t in self.tweets.find(): x.append(t['positive']) y.append(t['negative']) return [x,y] if __name__ == '__main__': c = Store() array = c.fetch() t = numpy.arange(0., 0.03, 1) pyplot.plot(array[0], array[1], 'ro', t, t, 'b--') pyplot.show() Any suggestions would be appreciated, Patrick

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• How do i use repoze.who?

  - by misterwebz

  I'm having some trouble understanding how repoze.who works. I've followed a tutorial i found by searching on google and here's what i already have: This is what i added in my middleware.py file from repoze.who.config import make_middleware_with_config as make_who_with_config app = make_who_with_config(app, global_conf, app_conf['who.config_file'], app_conf['who.log_file'], app_conf['who.log_level']) Here's the who.ini : http://pastebin.com/w5Tba2Fp Here's repoze_auth.py in /lib/auth/: from paste.httpexceptions import HTTPFound from iwant.model import User class UserModelPlugin(object): def authenticate(self, environ, identity): try: username = identity['login'] password = identity['password'] except KeyError: return None success = User.authenticate(username, password) return success def add_metadata(self, environ, identity): username = identity.get('repoze.who.userid') user = User.get(username) if user is not None: identity['user'] = user I've also checked the plugins in the repoze.who folder, but i failed to understand how it's supposed to be used. I'd appreciate it if someone would push me in the right direction.

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• begin...end VS braces {...} VS indentation grouping

  - by Halst

  Hi, everyone. I don't want to fuel any holy-wars here, but I need to ask your opinion. Right now I'm in process of designing a Hardware Description Language as a project in my university. I decided to take VHDL language and just add some syntax-sugar 'coz VHDL is rather obese in syntax. I decided to use indentation to group blocks of code (like in Python), and I'm strongly criticized for that. Originally Begin...End; grouping is used in VHDL language. I have no clue what are cons and pros of these 3 types of grouping, the only thing I know is that I like Python style and I don't understand if it's usage could be erroneous or something? What do you think? What do you like? (hope that I can get some feedback from people who extensively used different languages with different code-grouping syntax, like Pasca, Ada, Delphi, C, C++, C#, Java, Python)

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• review on django book vs django tutorial

  - by momo

  going through both the django book and tutorial, am a bit confused to the differences in approach (aren't they both written by the same people?) can anyone who has experience in both give a short review on them? i have decent python skills (largely untested though), but no experience at all in web apps and am trying to decide which one to stick to. i briefly looked in to practical django projects but that was a bit too complicated for me, my background is primarily bash scripting, the python i know i learned from an instant hacking tutorial and diving into python.

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• How do you sort files numerically?

  - by Zachary Young

  Hello all, First off, I'm posting this because when I was looking for a solution to the problem below, I could not find one on stackoverflow. So, I'm hoping to add a little bit to the knowledge base here. I need to process some files in a directory and need the files to be sorted numerically. I found some examples on sorting--specifically with using the lamba pattern--at wiki.python.org, and I put this together: #!env/python import re tiffFiles = """ayurveda_1.tif ayurveda_11.tif ayurveda_13.tif ayurveda_2.tif ayurveda_20.tif ayurveda_22.tif""".split('\n') numPattern = re.compile('_(\d{1,2})\.', re.IGNORECASE) tiffFiles.sort(cmp, key=lambda tFile: int(numPattern.search(tFile).group(1))) print tiffFiles I'm still rather new to Python and would like to ask the community if there are any improvements that can be made to this: shortening the code up (removing lambda), performance, style/readability? Thank you, Zachary

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• Subprocess fails to catch the standard output

  - by user343934

  I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "<string>", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in <module> align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO\__init__.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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• Brew install pyqt mavericks

  - by user3722876

  I have some trouble installing PyQt on my Mac. HOMEBREW_VERSION: 0.9.5 ORIGIN: https://github.com/Homebrew/homebrew.git HEAD: d8af29d63a5b94ffee863788210c3a895315035f HOMEBREW_PREFIX: /usr/local HOMEBREW_CELLAR: /usr/local/Cellar CPU: quad-core 64-bit sandybridge OS X: 10.9.3-x86_64 Xcode: 5.1.1 CLT: 5.1.0.0.1.1396320587 Clang: 5.1 build 503 MacPorts/Fink: /opt/local/bin/port X11: 2.7.6 => /opt/X11 System Ruby: 2.0.0-451 Perl: /usr/bin/perl Python: /opt/local/bin/python => /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 Ruby: /usr/bin/ruby sip installation ok qt installation ok brew install pyqt => make 1 error generated. make[1]: *** [qtlib.o] Error 1 1 error generated. make[1]: *** [siplib.o] Error 1 make: *** [all] Error 2 No idea what's happening...

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• read subprocess stdout line by line

  - by Caspin

  My python script uses subprocess to call a linux utility that is very noisy. I want to store all of the output to a log file, but only show some of it to the user. I thought the following would work, but the output does show up in my application until the utility has produced a significant amount of output. #fake_utility.py, just generates lots of output over time import time i = 0 while True: print hex(i)*512 i += 1 time.sleep(0.5) #filters output import subprocess proc = subprocess.Popen(['python','fake_utility.py'],stdout.subprocess.PIPE) for line in proc.stdout: #the real code does filtering here print "test:", line.rstrip() The behavior I really want is for the filter script to print each line as it is received from the subprocess. Sorta like what tee does but with python code. What am I missing? Is this even possible?

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• How to implement this mechanism:

  - by Sorush Rabiee

  Hi i want to implement a dynamic relation mechanism with python something like: a:=10 b:=30 c:=a+b print c a+=20 print c output: 40 60 c is always result of a+b. so if a or b change, then c automatically updates value. i write a code in C# and do this by set and get mechanism. now want to translate it to python code for using in another program (FontLab Studio 5). I'm not so familiar with Python. does he have a get,set feature like C#? if not ho to implement one?

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• How to create a backup from SqlAlchemy?

  - by swilliams

  I'm writing a Pylons app, and am trying to create a simple backup system where every table is serialized and tarred up into a single file for an administrator to download, and use to restore the app should something bad happen. I can serialize my table data just fine using the SqlAlchemy serializer, and I can deserialize it fine as well, but I can't figure out how to commit those changes back to the database. In order to serialize my data I am doing this: from myproject.model.meta import Session from sqlalchemy.ext.serializer import loads, dumps q = Session.query(MyTable) serialized_data = dumps(q.all()) In order to test things out, I go ahead and truncation MyTable, and then attempt to restore using serialized_data: from myproject.model import meta restore_q = loads(serialized_data, meta.metadata, Session) This doesn't seem to do anything... I've tried calling a Session.commit after the fact, individually walking through all the objects in restore_q and adding them, but nothing seems to work. What am I missing? Or is there a better way to do what I'm aiming for? I don't want to shell out and directly touch the database, since SqlAlchemy supports different database engines.

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• I am trying to move a rectangle in Pygame using coordinates but won't work

  - by user1821449

  this is my code import pygame from pygame.locals import * import sys pygame.init() pygame.display.set_caption("*no current mission*") size = (1280, 750) screen = pygame.display.set_mode(size) clock = pygame.time.Clock() bg = pygame.image.load("bg1.png") guy = pygame.image.load("hero_stand.png") rect = guy.get_rect() x = 10 y = 10 while True: for event in pygame.event.get(): if event.type == pygame.QUIT: sys.exit() if event.type == KEYDOWN: _if event.key == K_RIGHT: x += 5 rect.move(x,y)_ rect.move(x,y) screen.blit(bg,(0,0)) screen.blit(guy, rect) pygame.display.flip() it is just a simple test to see if i can get a rectangle to move. Everything seems to work except the code I put in italic.

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• GIS: When and why to use ArcObjects over GDAL programming to work with ArcGIS rasters and vectors?

  - by anotherobject

  Im just starting off with GDAL + python to support operations that cannot be done with ArcGIS python geoprocessing scripting. Mainly I am doing spatial modeling/analysis/editing of raster and vector data. I am a bit confused when ArcObject development is required versus when GDAL can be used? Is there functionality of ArcObjects that GDAL does not do? Is the opposite true too? I am assuming that ArcObjects are more useful in developing online tools versus Desktop analysis and modeling where the difference is more to do with preference? In my case i prefer GDAL because of python support, which I believe ArcObjects lack. thanks!

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• Getting py2exe to work

  - by Richard

  Hello all. I am following the the tutorial at http://www.py2exe.org/index.cgi/Tutorial to figure out how to use py2exe. I get down to step 3 where you are suppose to run the command: python setup.py py2exe I do that and then I get this error: 'python' is not recognized as an internal or external command, operable program or batch file. I have python 2.4 installed on my machine. any idea's? I am sure it is something simple.

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• Importing Sqlite data into Google App Engine

  - by Keck

  I have a relatively extensive sqlite database that I'd like to import into my Google App Engine python app. I've created my models using the appengine API which are close, but not quite identical to the existing schema. I've written an import script to load the data from sqlite and create/save new appengine objects, but the appengine environment blocks me from accessing the sqlite library. This script is only to be run on my local app engine instance, and from there I hope to push the data to google. Am I approaching this problem the wrong way, or is there a way to import the sqlite library while running in the local instance's environment?

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