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  • How do I make custom functions chain-able with jQuery's?

    - by sergio
    I need a "callfront" or "precall" (the opposite of "callback" ¿?) to add in MANY places before an animation occurs in an existing plugin, To be used like e.g. $(some_unpredictable_obj).preFunct().animate(… The problem is, as I said they are MANY places, and all of them are different animations, on different objects. I can TELL where all of them occur, but I don't want to add over and over the same code. I actually have to add both a function before and after those animations, but I think I can use the callback for all of them. In a perfect world, I'd like to replace every animate(property, duration) by preFunct().animate(property,duration).postFunct() preFunct and postFunct don't need parameters, since they are always the same action, on the same object. This could be an amazing addition to "jQuery" (an easy way to jQuerize custom functions to be added to the normal chain (without messing with queues) I found this example but it will act on the applied element, and I don't want that because, as I said above, all the original animations to be added to are on different elements. I also found jQuery.timing, but it looks cooler the chain-able function :) Thanks.

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  • TEXTAREAs scroll by themselves (on IE8) every time you type one character

    - by Justin Grant
    IE8 has a known bug (per connect.microsoft.com) where typing or pasting text into a TEXTAREA element will cause the textarea to scroll by itself. This is hugely annoying and shows up in many community sites, including Wikipedia. The repro is this: open the HTML below with IE8 (or use any long page on wikipedia which will exhibit the same problem until they fix it) size the browser full-screen paste a few pages of text into the TEXTAREA move the scrollbar to the middle position now type one character into the textarea Expected: nothing happens Actual: scrossing happens on its own, and the insertion point ends up near the bottom of the textarea! Below is repro HTML (can also see this live on the web here: http://en.wikipedia.org/w/index.php?title=Text_box&action=edit) <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" > <body> <div style="width: 80%"> <textarea rows="20" cols="80" style="width:100%;" ></textarea> </div> </body> </html>

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  • Adding a button bar at the bottom of ListView upon checkbox select (as in gmail app)??

    - by elto
    I have a ListView with custom adapter. In each row there is a checkbox and couple of textviews. I want user to give option to delete the check marked items, so as soon as soon clicks on one of the checkbox, I want a button bar to slide in from the bottom and stay at the bottom regardless of listview scroll. This is something like the email app behavior of Motorola Cliq and to some extent gmail app itself. I have tried adding a relativelayout (containing buttons) below the listview, which has visibility set to gone initially, but as soon as user checks a button, the visibility changes to "visible". I have added a slide-in animation to it too. It is working but problem is that it is overlapping the last element of the listview which user can not checkmark if the button bar has already become visible. So I tried to set the bottom margin of the listview equal to the height of the button bar when I'm changing the button bar visibility, which solves the problem of overlap, but now the checkbox behavior has gone weird. Clicking on one checkmark tries to checkmark another checkmark in the list for some weird reason. I noticed that this happens because as soon as I change the listview margin, list redraws itself, and during this new call to getView() method of adapter, things mess up. I wanted to ask if anyone has done something like this. What is the best method to add such button bar below list while keeping the slide-in animation intact. Also, What is the footer-view of listview and can that solve my problem?

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  • Which pdf elements could cause crashes?

    - by Felixyz
    This is a very general question but it's based on a specific problem. I've created a pdf reader app for the iPad and it works fine except for certain pdf pages which always crash the app. We now found out that the very same pages cause Safari to crash as well, so as I had started to suspect the problem is somewhere in Apple's pdf rendering code. From what I have been able to see, the crashing pages cause the rendering libraries to start allocating memory like mad until the app is killed. I have nothing else to help me pinpoint what triggers this process. It doesn't necessarily happen with the largest documents, or the ones with the most shapes. In fact, we haven't found any parameter that helps us predict which pages will crash and which not. Now we just discovered that running the pages through a consumer program that lets you merge docs gets rid of the problem, but I haven't been able to detect which attribute or element it is that is the key. Changing documents by hand is also not an option for us in the long run. We need to run an automated process on our server. I'm hoping someone with deeper knowledge about the pdf file format would be able to point me in a reasonable direction to look for document features that could cause this kind of behavior. All I've found so far is something about JBIG2 images, and I don't think we have any of those.

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  • $HTTP_RAW_POST_DATA and Wordpress media_handle_upload

    - by BaronVonKaneHoffen
    Hi there! So I'm making something for which users need to upload images from a canvas element (on the front end) using Wordpress's in-built Media Upload API. I've successfully uploaded images with the API from a file input in a form: <input type="file" name="async-upload" id="async-upload" size="40" /> ... <?php $new_attach_id = media_handle_upload( 'async-upload', $new_id ); ?> and I've saved images from the canvas using my own script: <script type="text/javascript"> ... var img = canvas.toDataURL("image/png"); ... ajax.send(img ); </script> ... <?php $imageData=$GLOBALS['HTTP_RAW_POST_DATA']; $filteredData=substr($imageData, strpos($imageData, ",")+1); $unencodedData=base64_decode($filteredData); $fp = fopen( 'saved_images/canv_save_test.png', 'wb' ); fwrite( $fp, $unencodedData); ... ?> Problem is, Wordpress's media_handle_upload() only accepts an index to the $_FILES array for the upload. So the question is: How can I pass the image data from HTTP_RAW_POST_DATA to it? Could I make the $_FILES['tmp-name'] point to it somehow? Could I use another script as an intermediate step somehow? Could I unleash the monkeys on the typewriter until they come up with the answer? Any help very very much appreciated! Thanks, Kane

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  • Hashtable is that fast

    - by Costa
    Hi s[0]*31^(n-1) + s[1]*31^(n-2) + ... + s[n-1]. Is the hash function of the java string, I assume the rest of languages is similar or close to this implementation. If we have hash-Table and a list of 50 elements. each element is 7 chars ABCDEF1, ABCDEF2, ABCDEF3..... ABCDEFn If each bucket of hashtable contains 5 strings (I think this function will make it one string per bucket, but let us assume it is 5). If we call col.Contains("ABCDEFn"); // will do 6 comparisons and discover the difference on the 7th. The hash-table will take around 70 operations (multiplication and additions) to get the hashcode and to compare with 5 strings in bucket. and BANG it found. For list it will take around 300 comparisons to find it. for the case that there is only 10 elements, the list will take around 70 operations but the Hashtable will take around 50 operations. and note that hashtable operations are more time consuming (it is multiplications). I conclude that HybirdDictionary in .Net probably is the best choice for that most cases that require Hashtable with unknown size, because it will let me use a list till the list becomes more than 10 elements. still need something like HashSet rather than a Dictionary of keys and values, I wonder why there is no HybirdSet!! So what do u think? Thanks

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  • How to start/stop/restart jQuery animation

    - by Emin
    I have the following function that when I call displays a message to the user for a certain amount of time (5 secs in my case). During this "period" if I call the function again to display another message, practically it should hide, then re-appear with the new message for another 5 seconds. What happens with my code below, I call the function to display the message. Then, lets say on the 4th second, I call it again to display another message, the new message is displayed for 1 second. I need to somehow -reset- the time but can't figure out how. Tried stopping the animation, checking if the element was visible and hiding it if it was, and many other things. I believe the solution is a simple chaining issue but can't get it right. So any help would be appreciated! function display_message(msgType, message) { var elem = $('#ur_messagebox'); switch (msgType) { case 'confirm': elem.addClass('msg_confirm'); break; case 'error': elem.addClass('msg_error'); break; } elem.html(message); elem.show().delay(5000).fadeOut(1000); } thanks in advance...

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  • Grouping XSLT nodes via transformation

    - by scott
    I'm trying to create a page like this via XSLT transformation. Pages page1 page2 Links link1 link2 Here is the xml <siteMenu> <Pages> <title>page1</title> </Pages> <Pages> <title>page2</title> </Pages> <Links> <title>link1</title> </Links> <Links> <title>link2</title> </Links> </siteMenu> I tried using <xsl:for-each select="*"> and <xsl:for-each-group select="*" group-by="@v"> but that gives me every element, but how can i separate them out based on the parent node?

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  • jQuery > Update inline script on form submission

    - by Andrew Kirk
    I am using the ChemDoodle Web Components to display molecules on a web page. Basically, I can just insert the following script in my page and it will create an HTML5 canvas element to display the molecule. <script> var transform1 = new TransformCanvas('transform1', 200, 200, true); transform1.specs.bonds_useJMOLColors = true; transform1.specs.bonds_width_2D = 3; transform1.specs.atoms_useJMOLColors = true; transform1.specs.atoms_circles_2D = true; transform1.specs.backgroundColor = 'black'; transform1.specs.bonds_clearOverlaps_2D = true; transform1.loadMolecule(readPDB(molecule)); </script> In this example, "molecule" is a variable that I have defined in an external script by using the jQuery.ajax() function to load a PDB file. This is all fine and good. Now, I would like to include a form on the page that will allow a user to paste in a PDB molecule definition. Upon submitting the form, I want to update the "molecule" variable with the form data so that the ChemDoodle Web Components script will work its magic and display molecule defined by the PDB definition pasted into the form. I am using the following jQuery code to process the the form submission. $(".button").click(function() { // validate and process form here //hide previous errors $('.error').hide(); //validate pdb textarea field var pdb = $("textarea#pdb").val(); if (pdb == "") { $("label#pdb_error").show(); $("textarea#pdb").focus(); return false; } molecule = pdb; }); This code is setting the "molecule" variable upon the form submission but it is not being passed back to the inline script as I had hoped. I have tried a number of variations on this but can't seem to get it right. Any clues as to where I might be going wrong would be much appreciated.

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  • jQuery: one-liner for removing all children but one

    - by user1352530
    HTML code is: <li> <a href="#" /> <ul> <li> <a href="#"/> </li> </ul> </li> I want to delete any node under $(this) = li that is not a link. If there are more than one link, just the first one is saved, and if there are links inside the ul tag, they are not included because they are descendants and no childrens. Something like this (I am cloning and outputting html): $(this).clone().remove('not(a:first)').html(); //Assuming remove looks for "a" as a first child Does not work, so I try with this: $(this).clone().children().remove('not(a:first)').parent().html(); Does not work so I try with this: $(this).clone().remove('not(>a:first)').html(); I need the original element as a reference after removal for chaining more operations EDIT: Ok! Second one works with a little syntax correction as some appointed (:not( instead of not() but I would like to know if there is any other solution similar to the third line so I don't have to do children().remove().parent(). Thank you!

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  • How do I create a class repository in Java and do I really need it?

    - by Roman
    I have a large number of objects which are identified by names (strings). So, I would like to have a kind of mapping from object name to the class instances. I was told that in this situation I can use a "repository" class which works like that: Server myServer = ServerRepository.getServer("NameOfServer"); So, if there is already an object (sever) with the "NameOfServer" it will be returned by the "getServer". If such an object does not exist yet, it will be created and returned by the "getServer". So, my question is how to program such a "repository" class? In this class I have to be able to check if there is an instance of a given class such that it has a given value of a given field. How can I do it? I need to have a kind of loop over all existing object of a given class? Another part of my question is why I cannot use associative arrays (associative container, map, mapping, dictionary, finite map)? (I am not sure how do you call it in Java) In more details, I have an "array" which maps names of objects to objects. So, whenever I create a new object, I add a new element to the array: myArray["NameOfServer"] = new Server("NameOfServer").

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  • what use does the javascript forEach method have (that map can't do)?

    - by JohnMerlino
    Hey all, The only difference I see in map and foreach is that map is returning an array and foreach is not. However, I don't even understand the last line of the foreach method "func.call(scope, this[i], i, this);". For example, isn't "this" and "scope" referring to same object and isn't this[i] and i referring to the current value in the loop? I noticed on another post someone said "Use forEach when you want to do something on the basis of each element of the list. You might be adding things to the page, for example. Essentially, it's great for when you want "side effects". I don't know what is meant by side effects. Array.prototype.map = function(fnc) { var a = new Array(this.length); for (var i = 0; i < this.length; i++) { a[i] = fnc(this[i]); } return a; } Array.prototype.forEach = function(func, scope) { scope = scope || this; for (var i = 0, l = this.length; i < l; i++) func.call(scope, this[i], i, this); } Finally, are there any real uses for these methods in javascript (since we aren't updating a database) other than to manipulate numbers like this: alert([1,2,3,4].map(function(x){ return x + 1})); //this is the only example I ever see of map in javascript. Thanks for any reply.

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  • How to add dimensions to dynamic img elements (Updated)

    - by Mohammad
    I use a Json call to get a list of image addresses, then I add them individually to a div like this. Unfortunately the image dimension is not part of the Json information. <div id="container"> <img src="A.jpg" alt="" /> <img src="B.jpg" alt="" /> ... </div> Do any of you JQuery geniuses know of a code that would flawlessly and dynamically add the true Width and Height to each img element in the container as soon as each individual one is rendered? I was thinking maybe the code could do a image width check width > 0 to evaluate when the image has actually been rendered, then fire. But I wouldn't know how to go about that and make it work stably. How is the best way of going about this? Thank you so much! Update, As the answers point out, adding Width or Height to the elements is pretty routine. The problem here is actually writing a code that would know when to do that. And evaluate that condition for each image not the page as a whole.

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  • Jquery .wrap and first-child

    - by Johann
    Hi, I'm in a situation in which I need to use .wrap and :first-child. This is what I am doing: <script>$("a").wrap("<div class='category-wrapper'></div>");</script> <script>$("div.category-wrapper:first-child").addClass("first");</script> This should render a div.category-wrapper outside a link and then add a "first" class to every first div.category-wrapper. The output is: <div class="category-wrapper"><a href="#">Test</a></div> Which is good! However, I am not able to get the "first-child" to work (it doesn't adds the "first" class). If I use it somewhere else it works so I am sure it's something related to the dynamic rendering of the previous element. Any help is appreciated! Thanks! Sample output would be: <div class="category-wrapper"><a href="#">Test #1</a></div> <div class="category-wrapper"><a href="#">Test #2</a></div> <div class="category-wrapper"><a href="#">Test #3</a></div> <div class="category-wrapper"><a href="#">Test #4</a></div> Desired output: <div class="category-wrapper first"><a href="#">Test #1</a></div> <div class="category-wrapper"><a href="#">Test #2</a></div> <div class="category-wrapper"><a href="#">Test #3</a></div> <div class="category-wrapper"><a href="#">Test #4</a></div> However, I am not able to make it work.

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  • Is there a default way to get hold of an internal property in jQueryUi widget?

    - by prodigitalson
    Im using an existing widget from the jquery-ui labs call selectmenu. It has callback options for the events close and open. The problem is i need in these event to animate a node that is part of the widget but not what its connected to. In order to do this i need access to this node. for example if i were to actually modify the widget code itself: // ... other methods/properties "open" : function(event){ // ... the original logic // this is my animation $(this.list).slideUp('slow'); // this is the orginal call to _trigger this._trigger('open', event, $this._uiHash()); }, // ... other methods/properties However when in the scope of the event handler i attach this is the orginal element i called the widget on. I need the widget instance or specifically the widget instance's list property. $('select#custom').selectmenu({ 'open': function(){ // in this scope `this` is an HTMLSelectElement not the ui widget } }); Whats the best way to go about getting the list property from the widget?

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  • jquery function

    - by kevin
    Hello id like to get the current element firing this event inside the event, Ideally I need the id, selected value and class, Thanks in advance $(document).ready(function () { $("#positions select").live("change", function () { var id = $("#category_id").val(); //var id = this.val(); alert(id); $.getJSON("/Category/GetSubCategories/" + id, function (data) { if (data.length > 0) { alert(data.length); var position = document.getElementById('positions'); var tr = position.insertRow(7); var td1 = tr.insertCell(-1); var td = tr.insertCell(-1); var sel = document.createElement("select"); sel.name = 'sel'; sel.id = 'sel'; sel.setAttribute('class', 'category'); // $("positions select").live("change", function () { //}); td.appendChild(sel); $.each(data, function (GetSubCatergories, category) { $('#sel').append($("<option></option>"). attr("value", category.category_id). text(category.name)); }); } }); }); });

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  • NHibernate query against the key field of a dictionary (map)

    - by Carl Raymond
    I have an object model where a Calendar object has an IDictionary<MembershipUser, Perms> called UserPermissions, where MembershipUser is an object, and Perms is a simple enumeration. This is in the mapping file for Calendar as <map name="UserPermissions" table="CalendarUserPermissions" lazy="true" cascade="all"> <key column="CalendarID"/> <index-many-to-many class="MembershipUser" column="UserGUID" /> <element column="Permissions" type="CalendarPermission" not-null="true" /> </map> Now I want to execute a query to find all calendars for which a given user has some permission defined. The permission is irrelevant; I just want a list of the calendars where a given user is present as a key in the UserPermissions dictionary. I have the username property, not a MembershipUser object. How do I build that using QBC (or HQL)? Here's what I've tried: ISession session = SessionManager.CurrentSession; ICriteria calCrit = session.CreateCriteria<Calendar>(); ICriteria userCrit = calCrit.CreateCriteria("UserPermissions.indices"); userCrit.Add(Expression.Eq("Username", username)); return calCrit.List<Calendar>(); This constructed invalid SQL -- the WHERE clause contained WHERE membership1_.Username = @p0 as expected, but the FROM clause didn't include the MemberhipUsers table. Also, I really had to struggle to learn about the .indices notation. I found it by digging through the NHibernate source code, and saw that there's also .elements and some other dotted notations. Where's a reference to the allowed syntax of an association path? I feel like what's above is very close, and just missing something simple.

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  • Deserialize xml which uses attribute name/value pairs

    - by Bodyloss
    My application receives a constant stream of xml files which are more or less a direct copy of the database record <record type="update"> <field name="id">987654321</field> <field name="user_id">4321</field> <field name="updated">2011-11-24 13:43:23</field> </record> And I need to deserialize this into a class which provides nullable property's for all columns class Record { public long? Id { get; set; } public long? UserId { get; set; } public DateTime? Updated { get; set; } } I just cant seem to work out a method of doing this without having to parse the xml file manually and switch on the field's name attribute to store the values. Is their a way this can be achieved quickly using an XmlSerializer? And if not is their a more efficient way of parsing it manually? Regards and thanks My main problem is that the attribute name needs to have its value set to a property name and its value as the contents of a <field>..</field> element

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  • Javascript CS-PRNG - 64-bit random

    - by Jack
    Hi, I need to generate a cryptographically secure 64-bit unsigned random integer in Javascript. The first problem is that Javascript only allows 64-bit signed integers, so 9223372036854775808 is the biggest supported integer without going into floating point use I think? To fix this I can use a big number library, no problem. My Method: var randNum = SHA256( randBigInt(128, 0) ) % 2^64; Where SHA256() is a secure hash function and randBigInt() is defined below as a non-crypto PRNG, im giving it a 128bit seed so brute force shouldn't be a problem. randBigInt(n,s) //return an n-bit random BigInt (n>=1). If s=1, then the most significant of those n bits is set to 1. Is this a secure method to generate a cryptographically secure 64-bit random int? And importantly does taking the 2^64 mod guarantee 100% I have a 64-bit number? An abstract example, say this number is prime (it isn't i know), I will use it in the Galois Field [2^p], where p must be 64bits so that every possible 1-63bit number is a field element. In this query, my random int must be larger than any 63-bit number. And Im not sure im correct in taking the 2^64 mod of a 256bit hash output. Thanks (hope that makes sense)

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  • Fast serarch of 2 dimensional array

    - by Tim
    I need a method of quickly searching a large 2 dimensional array. I extract the array from Excel, so 1 dimension represents the rows and the second the columns. I wish to obtain a list of the rows where the columns match certain criteria. I need to know the row number (or index of the array). For example, if I extract a range from excel. I may need to find all rows where column A =”dog” and column B = 7 and column J “a”. I only know which columns and which value to find at run time, so I can’t hard code the column index. I could use a simple loop, but is this efficient ? I need to run it several thousand times, searching for different criteria each time. For r As Integer = 0 To UBound(myArray, 0) - 1 match = True For c = 0 To UBound(myArray, 1) - 1 If not doesValueMeetCriteria(myarray(r,c) then match = False Exit For End If Next If match Then addRowToMatchedRows(r) Next The doesValueMeetCriteria function is a simple function that checks the value of the array element against the query requirement. e.g. Column A = dog etc. Is it more effiecent to create a datatable from the array and use the .select method ? Can I use Linq in some way ? Perhaps some form of dictionary or hashtable ? Or is the simple loop the most effiecent ? Your suggestions are most welcome.

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  • Java - How to declare table[i][j] elements as instance variables?

    - by JDelage
    All, I am trying to code a Connect4 game. For this, I have created a P4Game class and a P4Board class which represents the i X j dimensions of the Connect4 board. In P4Game, I have the following: public class P4Game{ //INSTANCE VARIABLES private int nbLines; private int nbColumns; private P4Board [][] position; //CONSTRUCTOR public P4Game(int nbLines, int nbColumns){ this.nbColumns = nbColumns; this.nbLines = nbLines; P4Board [][] position = new P4Board [nbLines][nbColumns]; //Creates the table to receive the instances of the P4Board object.*/ for (int i=0; i<nbLines; i++){ for (int j=0; j<nbColumns; j++){ this.position[i][j] = new P4Board(i,j); //Meant to create each object at (line=i, column=j) } } } This causes a NullPointerException in the nested loops where I mention this.position[i][j]. I reference those objects in other methods of this class so I need them to be instance variables. I suppose the exception is due to the fact that I have not listed the table element position[i][j] as an instance variable at the beginning of the class. my question to people here is (1) is my assumption correct, and if so (2) what would be the syntax to declare instance variables of this form? Thank you all for your help with what I realize is a very basic question. Hopefully it will also benefit other newbies. Cheers, JDelage

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  • Objective C code to handle large amount of data processing in iPhone

    - by user167662
    I had the following code that takes in 14 mb or more of image data encoded in base4 string and converts them to jpeg before writing to a file in iphone. It crashes my program giving the following error : Program received signal: “0”. warning: check_safe_call: could not restore current frame I tweak my program and it can process a few more images before the error appear again. My coding is as follows: // parameters is an array where the fourth element contains a list of images in base64 >encoded string NSMutableArray *imageStrList = (NSMutableArray*) [parameters objectAtIndex:5]; while (imageStrList.count != 0) { NSString *imgString = [imageStrList objectAtIndex:0]; // Create a file name using my own Utility class NSString *fileName = [Utility generateFileNName]; NSData *restoredImg = [NSData decodeWebSafeBase64ForString:imgString]; UIImage *img = [UIImage imageWithData: restoredImg]; NSData *imgJPEG = UIImageJPEGRepresentation(img, 0.4f); [imgJPEG writeToFile:fileName atomically:YES]; [imageStrList removeObjectAtIndex:0]; } I tried playing around with UIImageJPEGRepresentation and found out that the lower the value, the more image it can processed but this should not be the way. I am wondering if there is anyway to free up memory of the imageStrList immediately after processing each image so that it can be used by the next one in the line.

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  • How do you move an admin menu item in Magento

    - by Josh Pennington
    I currently have an extension that I created and it currently sits inside of its own top level menu. I would like to move it so that the item would appear inside of the Customers menu. Does anyone know how to do this? It looks like this is handled inside the extensions config.xml file. The code that I have for it right now is as follows: <menu> <testimonials module="testimonials"> <title>Testimonials</title> <sort_order>71</sort_order> <children> <items module="testimonials"> <title>Manage Items</title> <sort_order>0</sort_order> <action>testimonials/adminhtml_testimonials</action> </items> </children> </testimonials> </menu> I tried changing the title element to Customers and it just created a duplicate Customers menu. Does anyone have any ideas? Thanks Josh Pennington

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  • How can I remove a JPanel from a JFrame?

    - by Roman
    Recently I asked here how to add a new JPanel to JFrame. The answer helped me to get a working code. But not I have a related question: "How can I remove an old JPanel". I need that because of the following problem. A new JPanel appears appears when I want (either time limit is exceeded or user press the "Submit" button). But in several seconds some element of the old JPanel appears together with the component of the new JPanel. I do not understand why it happens. I thought that it is because I have to other threads which update the window. But the first thread just add the old panel once (so, it should be finished). And in the second thread I have a loop which is broken (so, it also should be finished). Here is my code: private Thread controller = new Thread() { public void run() { // First we set the initial pane (for the selection of partner). SwingUtilities.invokeLater(new Runnable() { public void run() { frame.getContentPane().add(generatePartnerSelectionPanel()); frame.invalidate(); frame.validate(); } }); // Update the pane for the selection of the parnter. for (int i=40; i>0; i=i-1) { final int sec = i; SwingUtilities.invokeLater(new Runnable() { public void run() { timeLeftLabel.setText(sec + " seconds left."); } }); try {Thread.sleep(1000);} catch (InterruptedException e) {} if (partnerSubmitted) {break;} } // For the given user the selection phase is finished (either the time is over or form was submitted). SwingUtilities.invokeLater(new Runnable() { public void run() { frame.getContentPane().add(generateWaitForGamePanel()); frame.invalidate(); frame.validate(); } }); } };

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  • What is the optimum way to select the most dissimilar individuals from a population?

    - by Aaron D
    I have tried to use k-means clustering to select the most diverse markers in my population, for example, if we want to select 100 lines I cluster the whole population to 100 clusters then select the closest marker to the centroid from each cluster. The problem with my solution is it takes too much time (probably my function needs optimization), especially when the number of markers exceeds 100000. So, I will appreciate it so much if anyone can show me a new way to select markers that maximize diversity in my population and/or help me optimize my function to make it work faster. Thank you # example: library(BLR) data(wheat) dim(X) mdf<-mostdiff(t(X), 100,1,nstart=1000) Here is the mostdiff function that i used: mostdiff <- function(markers, nClust, nMrkPerClust, nstart=1000) { transposedMarkers <- as.array(markers) mrkClust <- kmeans(transposedMarkers, nClust, nstart=nstart) save(mrkClust, file="markerCluster.Rdata") # within clusters, pick the markers that are closest to the cluster centroid # turn the vector of which markers belong to which clusters into a list nClust long # each element of the list is a vector of the markers in that cluster clustersToList <- function(nClust, clusters) { vecOfCluster <- function(whichClust, clusters) { return(which(whichClust == clusters)) } return(apply(as.array(1:nClust), 1, vecOfCluster, clusters)) } pickCloseToCenter <- function(vecOfCluster, whichClust, transposedMarkers, centers, pickHowMany) { clustSize <- length(vecOfCluster) # if there are fewer than three markers, the center is equally distant from all so don't bother if (clustSize < 3) return(vecOfCluster[1:min(pickHowMany, clustSize)]) # figure out the distance (squared) between each marker in the cluster and the cluster center distToCenter <- function(marker, center){ diff <- center - marker return(sum(diff*diff)) } dists <- apply(transposedMarkers[vecOfCluster,], 1, distToCenter, center=centers[whichClust,]) return(vecOfCluster[order(dists)[1:min(pickHowMany, clustSize)]]) } }

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