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  • Changing the x-axis of seqlogo figures in matlab

    - by JudoWill
    I'm making a large number of seqlogos programatically. They are hundreds of columns wide and so running a seqlogo normally creates letters that are too thin to see. I've noticed that I only care about a few of these columns (not necessarily consecutive columns) ... most are noise but some are highly conserved. I use something like this snippet: conserve_cell = seqlogo(wide_seqs, 'displaylogo', false); high_bit_cols = any(conserve_cell{2}>1.0,1); [~, handle] = seqlogo(wide_seqs(:,high_bit_cols )); Although when I do this I lose the information about which columns the data came from. Normally I would just change the x-axis of the seqlogo. However, seqlogo's are some sort of crazy java-based object and calls like: set(handle, 'xticklabel', num2str(find(high_bit_cols))) don't work. Any help would be greatly appreciated. Thanks, Will

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  • Fixtures and inheritance in Symfony

    - by Tere
    Hi! I have a database schema in Symfony like this: Persona: actAs: { Timestampable: ~ } columns: primer_nombre: { type: string(255), notnull: true } segundo_nombre: { type: string(255) } apellido: { type: string(255), notnull: true } rut: { type: string(255) } email: { type: string(255) } email2: { type: string(255) } direccion: { type: string(400) } ciudad: { type: string(255) } region: { type: string(255) } pais: { type: string(255) } telefono: { type: string(255) } telefono2: { type: string(255) } fecha_nacimiento: { type: date } Alumno: inheritance: type: concrete extends: Persona columns: comentario: { type: string(255) } estado_pago: { type: string(255) } Alumno_Beca: columns: persona_id: { type: integer, primary: true } beca_id: { type: integer, primary: true } relations: Alumno: { onDelete: CASCADE, local: persona_id, foreign: id } Beca: { onDelete: CASCADE, local: beca_id, foreign: id } Beca: columns: nombre: { type: string(255) } monto: { type: double } porcentaje: { type: double } descripcion: { type: string(5000) } As you see, "alumno" has a concrete inheritance from "persona". Now I'm trying to create fixtures for this two tables, and I can't make Doctrine to load them. It gives me this error: SQLSTATE[23000]: Integrity constraint violation: 1452 Cannot add or update a child row: a foreign key constraint fails (eat/alumno__beca, CONSTRAINT alumno__beca_persona_id_alumno_id FOREIGN KEY (persona_id) REFERENCES alumno (id) ON DELETE CASCADE) Does someone know how to write a fixture for a table inherited from another? Thanks!

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  • How can I inject multiple repositories in a NServicebus message handler?

    - by Paco
    I use the following: public interface IRepository<T> { void Add(T entity); } public class Repository<T> { private readonly ISession session; public Repository(ISession session) { this.session = session; } public void Add(T entity) { session.Save(entity); } } public class SomeHandler : IHandleMessages<SomeMessage> { private readonly IRepository<EntityA> aRepository; private readonly IRepository<EntityB> bRepository; public SomeHandler(IRepository<EntityA> aRepository, IRepository<EntityB> bRepository) { this.aRepository = aRepository; this.bRepository = bRepository; } public void Handle(SomeMessage message) { aRepository.Add(new A(message.Property); bRepository.Add(new B(message.Property); } } public class MessageEndPoint : IConfigureThisEndpoint, AsA_Server, IWantCustomInitialization { public void Init() { ObjectFactory.Configure(config => { config.For<ISession>() .CacheBy(InstanceScope.ThreadLocal) .TheDefault.Is.ConstructedBy(ctx => ctx.GetInstance<ISessionFactory>().OpenSession()); config.ForRequestedType(typeof(IRepository<>)) .TheDefaultIsConcreteType(typeof(Repository<>)); } } My problem with the threadlocal storage is, is that the same session is used during the whole application thread. I discovered this when I saw the first level cache wasn't cleared. What I want is using a new session instance, before each call to IHandleMessages<.Handle. How can I do this with structuremap? Do I have to create a message module?

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  • How do I sort in solr by term frequency in multiple fields?

    - by user1488380
    I have been assigned a task that I should change our solr search to sort a list returned by solr by using the term frequency. Well, I´ve found a way to do so simply by using omitNorms="true". The problem is, that this won´t work when I am doing a field - search, say by name: q=name:jones Following this example I get a list of document whose term frequency is the highest for the "name" field. But What I wanted to achieve is to have a query that is giving my a list of documents whose term frequency is the highest for ALL fields. Example: If a User named Jones also has the word "Jones" in his biography 10 times I want that document ranked higher. Is that possible ?

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  • How can I use functools.partial on multiple methods on an object, and freeze parameters out of order

    - by Joseph Garvin
    I find functools.partial to be extremely useful, but I would like to be able to freeze arguments out of order (the argument you want to freeze is not always the first one) and I'd like to be able to apply it to several methods on a class at once, to make a proxy object that has the same methods as the underlying object except with some of its methods parameter being frozen (think of it as generalizing partial to apply to classes). I've managed to scrap together a version of functools.partial called 'bind' that lets me specify parameters out of order by passing them by keyword argument. That part works: >>> def foo(x, y): ... print x, y ... >>> bar = bind(foo, y=3) >>> bar(2) 2 3 But my proxy class does not work, and I'm not sure why: >>> class Foo(object): ... def bar(self, x, y): ... print x, y ... >>> a = Foo() >>> b = PureProxy(a, bar=bind(Foo.bar, y=3)) >>> b.bar(2) Traceback (most recent call last): File "<stdin>", line 1, in <module> TypeError: bar() takes exactly 3 arguments (2 given) I'm probably doing this all sorts of wrong because I'm just going by what I've pieced together from random documentation, blogs, and running dir() on all the pieces. Suggestions both on how to make this work and better ways to implement it would be appreciated ;) One detail I'm unsure about is how this should all interact with descriptors. Code follows. from types import MethodType class PureProxy(object): def __init__(self, underlying, **substitutions): self.underlying = underlying for name in substitutions: subst_attr = substitutions[name] if hasattr(subst_attr, "underlying"): setattr(self, name, MethodType(subst_attr, self, PureProxy)) def __getattribute__(self, name): return getattr(object.__getattribute__(self, "underlying"), name) def bind(f, *args, **kwargs): """ Lets you freeze arguments of a function be certain values. Unlike functools.partial, you can freeze arguments by name, which has the bonus of letting you freeze them out of order. args will be treated just like partial, but kwargs will properly take into account if you are specifying a regular argument by name. """ argspec = inspect.getargspec(f) argdict = copy(kwargs) if hasattr(f, "im_func"): f = f.im_func args_idx = 0 for arg in argspec.args: if args_idx >= len(args): break argdict[arg] = args[args_idx] args_idx += 1 num_plugged = args_idx def new_func(*inner_args, **inner_kwargs): args_idx = 0 for arg in argspec.args[num_plugged:]: if arg in argdict: continue if args_idx >= len(inner_args): # We can't raise an error here because some remaining arguments # may have been passed in by keyword. break argdict[arg] = inner_args[args_idx] args_idx += 1 f(**dict(argdict, **inner_kwargs)) new_func.underlying = f return new_func

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  • How can I reuse .NET resources in multiple executables?

    - by Brandon
    I have an existing application that I'm supposed to take and create a "mini" version of. Both are localized apps and we would like to reuse the resources in the main application as is. So, here's the basic structure of my apps: MainApplication.csproj /Properties/Resources.resx /MainUserControl.xaml (uses strings in Properties/Resources.resx) /MainUserControl.xaml.cs MiniApplication.csproj link to MainApplication/Properties/Resources.resx link to MainApplication/MainUserControl.xaml link to MainApplication/MainUserControl.xaml.cs MiniApplication.xaml (tries to use MainUserControl from MainApplication link) So, in summary, I've added the needed resources and user control from the main application as links in the mini application. However, when I run the mini application, I get the following exception. I'm guessing it's having trouble with the different namespaces, but how do I fix? Could not find any resources appropriate for the specified culture or the neutral culture. Make sure \"MainApplication.Properties.Resources.resources\" was correctly embedded or linked into assembly \"MiniApplication\" at compile time, or that all the satellite assemblies required are loadable and fully signed. FYI, I know I could put the user control in a user control library but the problem is that the mini application needs to have a small footprint. So, we only want to include what we need.

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  • Flex 3 ColumnChart: dynamically changing the column colors

    - by James
    When using a ColumnChart created in Flex 3, how can I to change the fill color of columns that meet a certain criteria? Example: I have 8 columns representing agreement percentages between groups of people and want to change the fill color (or otherwise highlight) of all the columns that have over 80% agreement.

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  • Are these tables too big for SQL Server or Oracle

    - by Jeffrey Cameron
    Hey all, I'm not much of a database guru so I would like some advice. Background We have 4 tables that are currently stored in Sybase IQ. We don't currently have any choice over this, we're basically stuck with what someone else decided for us. Sybase IQ is a column-oriented database that is perfect for a data warehouse. Unfortunately, my project needs to do a lot of transactional updating (we're more of an operational database) so I'm looking for more mainstream alternatives. Question Given these tables' dimensions, would anyone consider SQL Server or Oracle to be a viable alternative? Table 1 : 172 columns * 32 million rows Table 2 : 453 columns * 7 million rows Table 3 : 112 columns * 13 million rows Table 4 : 147 columns * 2.5 million rows Given the size of data what are the things I should be concerned about in terms of database choice, server configuration, memory, platform, etc.?

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  • jquery multiple ajax check for all done? (order not important)

    - by second
    Is there a neat way to make sure a bunch of ajax callbacks have all finished? They don't need to be executed in order, i just need all the data to be there. one idea is to have them all increment a counter on completion and check if counter == countMax, but that seems ugly. Also, are there sync issues? (from simultaneous read/write to the counter)

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  • Multiple Table Inheritance vs. Single Table Inheritance in Ruby on Rails

    - by Tony
    I have been struggling for the past few hours thinking about which route I should go. I have a Notification model. Up until now I have used a notification_type column to manage the types but I think it will be better to create separate classes for the types of notifications as they behave differently. Right now, there are 3 ways notifications can get sent out: SMS, Twitter, Email Each notification would have: id subject message valediction sent_people_count deliver_by geotarget event_id list_id processed_at deleted_at created_at updated_at Seems like STI is a good candidate right? Of course Twitter/SMS won't have a subject and Twitter won't have a sent_people_count, valediction. I would say in this case they share most of their fields. However what if I add a "reply_to" field for twitter and a boolean for DM? My point here is that right now STI makes sense but is this a case where I may be kicking myself in the future for not just starting with MTI? To further complicate things, I want a Newsletter model which is sort of a notification but the difference is that it won't use event_id or deliver_by. I could see all subclasses of notification using about 2/3 of the notification base class fields. Is STI a no-brainer, or should I use MTI? Thanks!

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  • Ruby: Is there a better way to iterate over multiple (big) files?

    - by zxcvbnm
    Here's what I'm doing (sorry for the variable names, I'm not using those in my code): File.open("out_file_1.txt", "w") do |out_1| File.open("out_file_2.txt", "w") do |out_2| File.open_and_process("in_file_1.txt", "r") do |in_1| File.open_and_process("in_file_2.txt", "r") do |in_2| while line_1 = in_1.gets do line_2 = in_2.gets #input files have the same number of lines #process data and output to files end end end end end The open_and_process method is just to open the file and close it once it's done. It's taken from the pickaxe book. Anyway, the main problem is that the code is nested too deeply. I can't load all the files' contents into memory, so I have to iterate line by line. Is there a better way to do this? Or at least prettify it?

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  • Does somebody know something about Flash-CS5' "multiple copies" bug?

    - by Slav
    I'm, generally, complaining, not asking, but if somebody will be able (Adobe isn't) to help - it will be perfect. I use Flash-CS5 IDE to compose .swc files to import it, then, into FlashDevelop. Evetyrhing works fine until SOMETIMES. About each 10th "Ctrl+S" (save) click Flash-CS5 duplicates ALL images (loaded .bmp, .jpg, .png... files) and names them like "Copy ..." where "..." is incrementing number. Furhtermore, Flash-CS5 creates duplications of some layers - other layers have duplications of items which put on them. Restoring project's state to previous (not copied) state - is the hell. This bug is not reproducible but it happens each 2 hours or so - both right after project's opening and after several hours of work. It happens on different machines - I know at least 5 people which told me that they also run into this issue and do not know how to escape it. Did somebody experienced it? Does somebody know how to handle it?

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  • How do you set the "global delimiter" in Excel using VBA?

    - by DanM
    I've noticed that if I use the text-to-columns feature with comma as the delimiter, any comma-delimited data I paste into Excel after that will be automatically split into columns. This makes me think Excel must have some kind of global delimiter. If this is true, how would I set this global delimiter using Excel VBA? Is it possible to do this directly, or do I need to "trick" Excel by doing a text-to-columns on some junk data, then delete the data? My ultimate goal is to be able to paste in a bunch of data from different files using a macro, and have Excel automatically split it into columns according to the delimiter I set.

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  • How to automize multiple projects build process by including digital signature of exe in Delphi?

    - by user193655
    After building a project group of 2 projects with Delphi (2009) I digitally sign the 2 exes using InstallAware Code signing, an exe that shipped with Delphi 2009. How is it possible to automize the digital signature, so when I build I can also attach digital signature. For digital signing I use a pvk (private key) file and an spc (Sw publisher certificate) file. Subquestion: Moreover I created a project group because I have 2 exes, but they are almost the same, the only thing that changes is the Application icon and the application name (one is ProductOne.dpr, the other is ProductTwo.dpr). In practice I have 2 brands of the same product, I have a single build but activation keys details activate one or the other, anyway now I was asked to change the icon and the filename, and for this I need to build 2 projects, activation key is not enough anymore to distinguish between the 2. Anyway if there is a way to do this from a single project it would be better.

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  • QListView how to add column ?

    - by Samir
    How can I add columns to QListView control. Found a method addColumn while seardhing, but in my Qt Creator 1.2.1 based on Qt 4.5.2(32 bit) QListView doesn't have such method at all !!! So how would I add columns ? Say I have 3 columns then what is the code to add a row ?

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  • How to allow multiple users to manage application running on server?

    - by Mary-Chan
    I'm not sure if the title makes sense. Hard question to ask. I have an application running on a server under my network account, and it's scheduled to run daily. I can remote in with my user credentials and check on the application. What if I want more than one person to be able to remote in and check it? I can create a new account on the server, but it wouldn't have network rights and the application needs access to network folders. What would be the best approach? Thanks! :-) P.S. Feel free to edit the tags. I can't figure out what to pick.

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  • Is there a more clear way to write out multiple functions that are part of an object?

    - by Gemma
    I have the following: $scope.modalReset = function () { gridService.modalReset($scope); } $scope.rowAction = function (action, row) { gridService.rowAction(action, $scope, row, 'Question'); } $scope.submitItem = function (formData) { gridService.submitItem($scope, 'Question', formData); } Is there a way that these function calls could be written more simply. I am not looking to combine them. There are all functions that are part of the scope object.

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  • mouseover producing multiple images works in Firefox, but not i.e.

    - by tcantrel
    The code below allows the user to hover over 1 object and it not only replaces the object but also shows an additional object between the buttons. It works great in Firefox, but does not in Internet Explorer. HELP webpage: http://www.isp.ucar.edu/ Thx, Terri if ( < ocument.images) { img1on = new Image(); img1on.src = "images/buttons/button-beachon-on.gif"; img1off = new Image(); img1off.src = "images/buttons/button-beachon.gif"; img2on = new Image(); img2on.src = "images/buttons/button-bgs-on.gif"; img2off = new Image(); img2off.src = "images/buttons/button-bgs.gif"; img3on = new Image(); img3on.src = "images/buttons/button-iam-on.gif"; img3off = new Image(); img3off.src = "images/buttons/button-iam.gif"; img4on = new Image(); img4on.src = "images/buttons/button-nvia-on.gif"; img4off = new Image(); img4off.src = "images/buttons/button-nvia.gif"; img5on = new Image(); img5on.src = "images/buttons/button-utls-on.gif"; img5off = new Image(); img5off.src = "images/buttons/button-utls.gif"; img6on = new Image(); img6on.src = "images/buttons/button-water-on.gif"; img6off = new Image(); img6off.src = "images/buttons/button-water.gif"; img7on = new Image(); img7on.src = "images/buttons/button-exploratory-on.gif"; img7off = new Image(); img7off.src = "images/buttons/button-exploratory.gif"; // second image that does not appear in original button space img1ad = new Image(); img1ad.src = "images/buttons/beachon-overview-sm.gif"; img2ad = new Image(); img2ad.src = "images/buttons/bgs-overview-sm.gif"; img3ad = new Image(); img3ad.src = "images/buttons/iam-overview-sm.gif"; img4ad = new Image(); img4ad.src = "images/buttons/nvia-overview-sm.gif"; img5ad = new Image(); img5ad.src = "images/buttons/utls-overview-sm.gif"; img6ad = new Image(); img6ad.src = "images/buttons/water-overview-sm.gif"; img7ad = new Image(); img7ad.src = "images/buttons/exploratory-overview-sm.gif"; } function imgOn(imgName) { if ( < ocument.images) { document[imgName].src = eval(imgName + "on.src"); document["holder"].src = eval(imgName + "ad.src"); } } function imgOff(imgName) { if ( < ocument.images) { document[imgName].src = eval(imgName + "off.src"); document["holder"].src = "images/buttons/isp-overview-sm.gif"; } }

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  • How to delete multiple files with msbuild/web deployment project?

    - by Alex
    I have an odd issue with how msbuild is behaving with a VS2008 Web Deployment Project and would like to know why it seems to randomly misbehave. I need to remove a number of files from a deployment folder that should only exist in my development environment. The files have been generated by the web application during dev/testing and are not included in my Visual Studio project/solution. The configuration I am using is as follows: <!-- Partial extract from Microsoft Visual Studio 2008 Web Deployment Project --> <ItemGroup> <DeleteAfterBuild Include="$(OutputPath)data\errors\*.xml" /> <!-- Folder 1: 36 files --> <DeleteAfterBuild Include="$(OutputPath)data\logos\*.*" /> <!-- Folder 2: 2 files --> <DeleteAfterBuild Include="$(OutputPath)banners\*.*" /> <!-- Folder 3: 1 file --> </ItemGroup> <Target Name="AfterBuild"> <Message Text="------ AfterBuild process starting ------" Importance="high" /> <Delete Files="@(DeleteAfterBuild)"> <Output TaskParameter="DeletedFiles" PropertyName="deleted" /> </Delete> <Message Text="DELETED FILES: $(deleted)" Importance="high" /> <Message Text="------ AfterBuild process complete ------" Importance="high" /> </Target> The problem I have is that when I do a build/rebuild of the Web Deployment Project it "sometimes" removes all the files but other times it will not remove anything! Or it will remove only one or two of the three folders in the DeleteAfterBuild item group. There seems to be no consistency in when the build process decides to remove the files or not. When I've edited the configuration to include only Folder 1 (for example), it removes all the files correctly. Then adding Folder 2 and 3, it starts removing all the files as I want. Then, seeming at random times, I'll rebuild the project and it won't remove any of the files! I have tried moving these items to the ExcludeFromBuild item group (which is probably where it should be) but it gives me the same unpredictable result. Has anyone experienced this? Am I doing something wrong? Why does this happen?

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  • Delete Duplicate records from large csv file C# .Net

    - by Sandhurst
    I have created a solution which read a large csv file currently 20-30 mb in size, I have tried to delete the duplicate rows based on certain column values that the user chooses at run time using the usual technique of finding duplicate rows but its so slow that it seems the program is not working at all. What other technique can be applied to remove duplicate records from a csv file Here's the code, definitely I am doing something wrong DataTable dtCSV = ReadCsv(file, columns); //columns is a list of string List column DataTable dt=RemoveDuplicateRecords(dtCSV, columns); private DataTable RemoveDuplicateRecords(DataTable dtCSV, List<string> columns) { DataView dv = dtCSV.DefaultView; string RowFilter=string.Empty; if(dt==null) dt = dv.ToTable().Clone(); DataRow row = dtCSV.Rows[0]; foreach (DataRow row in dtCSV.Rows) { try { RowFilter = string.Empty; foreach (string column in columns) { string col = column; RowFilter += "[" + col + "]" + "='" + row[col].ToString().Replace("'","''") + "' and "; } RowFilter = RowFilter.Substring(0, RowFilter.Length - 4); dv.RowFilter = RowFilter; DataRow dr = dt.NewRow(); bool result = RowExists(dt, RowFilter); if (!result) { dr.ItemArray = dv.ToTable().Rows[0].ItemArray; dt.Rows.Add(dr); } } catch (Exception ex) { } } return dt; }

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