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  • Intelligent search and generation of Java code, preferrably using Python?

    - by Ipsquiggle
    Basically, I do lots of one-off code generation, large-scale refactorings, etc. etc. in Java. My tool language of choice is Python, but I'll take whatever solutions you can offer. Here is a simplified illustration of what I would like, in a pseudocode Generating an implementation for an interface search within my project: for each Interface as iName: write class(name=iName+"Impl", implements=iName) search within the body of iName: for each Method as mName: write method(name=mName, body="// TODO implement this...") Basically, the tool I'm searching for would allow me to: parse files according to their Java structure ("search for interfaces") search for words contextualized by language elements and types ("variables of type SomeClass", "doStuff() method calls on SomeClass instances") to run searches with structural context ("within the body of the current result") easily replace or generate code (with helpers to generate, as above, or functions for replacing, "rename the interface to Foo", "insert the line Blah.Blah()", etc.) The point is, I don't want to spend a lot of time writing these things, as they are usually throwaway. But sometimes I need something just a little smarter than what grep offers. It wouldn't be too hard to write up a simplistic version of this, but if I'm going to use something like this at all, I'd expect it to be robust. Any suggestions of a tool/library that will help me accomplish this?

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  • Making IE "forget" information entered in form when using back button.

    - by typoknig
    I have a page with a form where many of the fields are populated from variables passed in the URL. Those fields are disabled (NON-EDITABLE) and are only there for the user to view. The remaining fields require user input and are NOT disabled (EDITABLE). When the form is submitted a confirmation page comes up. It may be the case that the user needs to submit several of these forms where the NON-EDITABLE information is identical from form to form, so being able to go back to the form page from the confirmation page would save a lot of time. The way I want this to work is when a user presses the back button all the NON-EDITABLE fields are populated, but the EDITABLE fields are blank. This is what Firefox is doing, but IE8 is does not "forget" what has been entered in the EDITABLE fields. To disable the cache the following appears at the beginning of my page AND at the end of my page. <head> <meta http-equiv="Pragma" content="no-cache"/> <meta http-equiv="Cache-Control" content="no-store"/> <head/> What more must I do to make IE forget what was entered in the EDITABLE fields when the back button is pressed? All of my pages are generated with PHP if that matters. EDIT: It appears to me that this is a problem of IE caching my page even though I have told it not to. Are my meta tags correct? Do I need to do something else to prevent IE from caching my page?

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  • multi-threading in MFC

    - by kiddo
    Hello all,in my application there is a small part of function,in which it will read files to get some information,the number of filecount would be utleast 50,So I thought of implementing threading.Say if the user is giving 50 files,I wanted to separate it as 5 *10, 5 thread should be created,so that each thread can handle 10 files which can speed up the process.And also from the below code you can see that some variables are common.I read some articles about threading and I am aware that only one thread should access a variable/contorl at a me(CCriticalStiuation can be used for that).For me as a beginner,I am finding hard to imlplement what I have learned about threading.Somebody please give me some idea with code shown below..thanks in advance file read function:// void CMyClass::GetWorkFilesInfo(CStringArray& dataFilesArray,CString* dataFilesB, int* check,DWORD noOfFiles,LPWSTR path) { CString cFilePath; int cIndex =0; int exceptionInd = 0; wchar_t** filesForWork = new wchar_t*[noOfFiles]; int tempCheck; int localIndex =0; for(int index = 0;index < noOfFiles; index++) { tempCheck = *(check + index); if(tempCheck == NOCHECKBOX) { *(filesForWork+cIndex) = new TCHAR[MAX_PATH]; wcscpy(*(filesForWork+cIndex),*(dataFilesB +index)); cIndex++; } else//CHECKED or UNCHECKED { dataFilesArray.Add(*(dataFilesB+index)); *(check + localIndex) = *(check + index); localIndex++; } } WorkFiles(&cFilePath,dataFilesArray,filesForWork, path, cIndex); dataFilesArray.Add(cFilePath); *(check + localIndex) = CHECKED; }

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  • Why does the order of the loops affect performance when iterating over a 2D array? [closed]

    - by Mark
    Possible Duplicate: Which of these two for loops is more efficient in terms of time and cache performance Below are two programs that are almost identical except that I switched the i and j variables around. They both run in different amounts of time. Could someone explain why this happens? Version 1 #include <stdio.h> #include <stdlib.h> main () { int i,j; static int x[4000][4000]; for (i = 0; i < 4000; i++) { for (j = 0; j < 4000; j++) { x[j][i] = i + j; } } } Version 2 #include <stdio.h> #include <stdlib.h> main () { int i,j; static int x[4000][4000]; for (j = 0; j < 4000; j++) { for (i = 0; i < 4000; i++) { x[j][i] = i + j; } } }

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  • Server sends json data correctly. Client parses it wrong

    - by alois.wirkes
    I have a PHP code that generates a JSON string to send to my Android app. This part works. The problem is when my app captures that string and try to convert it into a JSONArray object. The main idea is to store that data inside a SQLite database. Here's the code that captures the JSON string: public void getPostResponse(){ try{ br = new BufferedReader(new InputStreamReader(is,"iso-8859-1"),8); sb = new StringBuilder(); line = null; while((line = br.readLine()) != null){ sb.append(line+"\n"); } is.close(); result = sb.toString(); Log.e("getPostResponse","result= "+sb.toString()); }catch(Exception e){ Log.e("log_tag","Error converting result "+e.toString()); } } And this is the result in the LogCat: 10-11 16:27:01.171: E/getPostResponse(9155): result= [{ "establecimientos":[]},{ "rutas":[]},{ "formularios":[]},{ "clientes":[]},{ "mediciones":[]}] This is why I think there's an error, the result variable should contain the whole JSON string and it doesn't. Any ideas? Variables br, sb, line and result are declared globally. JSON sent from server is already a JSONArray (starts with '[' and ends with ']'), is this what's causing the problem?

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  • Prolog Beginner: How to unify with arithmentic cmparison operators or how to get a set var to range

    - by sixtyfootersdude
    I am new to prolog. I need to write an integer adder that will add numbers between 0-9 to other numbers 0-9 and produce a solution 0-18. This is what I want to do: add(in1, in2, out) :- in1 < 10, in2 < 10, out < 18. I would like to be able to call it like this: To Check if it is a valid addition: ?- add(1,2,3). true ?- add(1,2,4). false With one missing variable: ?- add(X,2,3). 1 ?- add(1,4,X). 5 With multiple missing variables: ?-add(X,Y,Z). % Some output that would make sense. Some examples could be: X=1, Y=1, Z=2 ; X=2, Y=1, Z=3 ...... I realize that this is probably a pretty simplistic question and it is probably very straightforward. However cording to the prolog tutorial I am using: "Unlike unification Arithmetic Comparison Operators operators cannot be used to give values to a variable. The can only be evaluated when every term on each side have been instantiated."

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  • Dependencyproperty doesn't have value on load

    - by Jakob
    My problem is this, I have a UC called profile that contains another UC called FollowImageControl. In my Profile.xaml i declaretively bind a property of FollowImageControl called FollowerId to a CurrentUserId from Profile.xaml.cs. Problem is that I CurrentUserId is assigned in Profile.xaml.cs; the Profile.xaml code-behind. This means that I do not initially get the FollowerId. I have these methods in the FollowImageControl.xaml.cs: public static readonly DependencyProperty _followUserId = DependencyProperty.Register("FollowUserId", typeof(Guid), typeof(FollowImageControl), null); public Guid FollowUserId { get { return (Guid)GetValue(_followUserId); } set { SetValue(_followUserId, value); } } public FollowImageControl() { // Required to initialize variables InitializeComponent(); LoggedInUserId = WebContext.Current.User.UserId; var ctx = new NotesDomainContext(); if (ctx.IsFollowingUser(LoggedInUserId, FollowUserId).Value) SwitchToDelete.Begin(); } private void AddImg_MouseLeftButtonDown(object sender, MouseButtonEventArgs e) { if (LoggedInUserId != FollowUserId) { var ctx = new NotesDomainContext(); ctx.FollowUser(FollowUserId, LoggedInUserId); ctx.SubmitChanges(); } } THE WEIRD THING IS that when i insert breakpoints the FollowerUserId in FollowImageControl() is 0, but it has a value in AddImg_MouseLeftButtonDown, and there is no inbetween logic that sets the value of it. How is this??? Here's a little more code info: This is my binding from profile.xaml <internalCtrl:FollowImageControl FollowUserId="{Binding ElementName=ProfileCtrl, Path=CurrentUserId}" /> this is my constructor in profile.xaml.cs wherein the CurrentUserId is set public static readonly DependencyProperty _CurrentUserId = DependencyProperty.Register("CurrentUserId", typeof(Guid), typeof(Profile), null); public Guid CurrentUserId { get { return (Guid)GetValue(_CurrentUserId); } set { SetValue(_CurrentUserId, value); } } public Profile(Guid UserId) { CurrentUserId = UserId; InitializeComponent(); Loaded += new RoutedEventHandler(Profile_Loaded); } I'm seriously dumbfound that one minute the FollowerId has no value, and the next it holds the right, without me having changed the value in the code-behind.

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  • game currency convert: math efficient

    - by Comradsky
    For variables:4 text views named diamondText, goldText, silverText, and bronzeText;money variable unsigned int money;and an NSTimer, every .1 sec,runs function: -(void)updateMoney{ money++; bronzeText.text = [NSString stringWithFormat:@"%d",money]; silverText.text = [NSString stringWithFormat:@"%d",money%10]; goldText.text = [NSString stringWithFormat:@"%d",money%100]; diamondText.text= [NSString stringWithFormat:@"%d",money%1000]; } Given that my currency is diamond = 10 gold = 10 silver = 10 bronze = 1; What would be most efficient way to calculate and display the money labels? How would you store this variable, with GameCenter and NSDictionary or GameCenter and something else? More details are below if you don't understand. To clarify: bronze has the last 2 numbers, silver has the next 2 numbers, and so on. I understand I could use 4 ints or an array, but i would rather try to use this method, unless theres a much more efficient way. Example: When money = 1000;bronzeText = nothing, silverText = 10,goldText = nothing, diamondText = nothing; What other ways would you do this that you think would be more efficient? I will be calling a function (void)collisionDetector that detects if my player.frame crosses with a flyingObject.frame, and if that object is a coin it gives an added value to money and then calls (void)updateMoney. Im just using the timer to test this and spawn these flying objects.

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  • Mathmatic errors in basic C++ program

    - by Heather
    I am working with a basic C++ program to determine the area and perimeter of a rectangle. My program works fine for whole numbers but falls apart when I use any number with a decimal. I get the impression that I am leaving something out, but since I'm a complete beginner, I have no idea what. Below is the source: #include <iostream> using namespace std; int main() { // Declared variables int length; // declares variable for length int width; // declares variable for width int area; // declares variable for area int perimeter; // declares variable for perimeter // Statements cout << "Enter the length and the width of the rectangle: "; // states what information to enter cin >> length >> width; // user input of length and width cout << endl; // closes the input area = length * width; // calculates area of rectangle perimeter = 2 * (length + width); //calculates perimeter of rectangle cout << "The area of the rectangle = " << area << " square units." <<endl; // displays the calculation of the area cout << "The perimeter of the rectangle = " << perimeter << " units." << endl; // displays the calculation of the perimeter system ("pause"); // REMOVE BEFORE RELEASE - testing purposes only return 0; }

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  • Does the Java Memory Model (JSR-133) imply that entering a monitor flushes the CPU data cache(s)?

    - by Durandal
    There is something that bugs me with the Java memory model (if i even understand everything correctly). If there are two threads A and B, there are no guarantees that B will ever see a value written by A, unless both A and B synchronize on the same monitor. For any system architecture that guarantees cache coherency between threads, there is no problem. But if the architecture does not support cache coherency in hardware, this essentially means that whenever a thread enters a monitor, all memory changes made before must be commited to main memory, and the cache must be invalidated. And it needs to be the entire data cache, not just a few lines, since the monitor has no information which variables in memory it guards. But that would surely impact performance of any application that needs to synchronize frequently (especially things like job queues with short running jobs). So can Java work reasonably well on architectures without hardware cache-coherency? If not, why doesn't the memory model make stronger guarantees about visibility? Wouldn't it be more efficient if the language would require information what is guarded by a monitor? As i see it the memory model gives us the worst of both worlds, the absolute need to synchronize, even if cache coherency is guaranteed in hardware, and on the other hand bad performance on incoherent architectures (full cache flushes). So shouldn't it be more strict (require information what is guarded by a monitor) or more lose and restrict potential platforms to cache-coherent architectures? As it is now, it doesn't make too much sense to me. Can somebody clear up why this specific memory model was choosen? EDIT: My use of strict and lose was a bad choice in retrospect. I used "strict" for the case where less guarantees are made and "lose" for the opposite. To avoid confusion, its probably better to speak in terms of stronger or weaker guarantees.

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  • Getting information from servlet created html

    - by user541597
    I have a servlet that creates an html text box and then redirects to another servlet on submit. How can I access the value of the html text box from the new servlet? I am able to access servlet variables from the new servlet but I am not aware of how to access the value of the html generated code. thanks, Here is the servlet that gets the text input public class ServletB extends HttpServlet { public void doGet(HttpServletRequest request, HttpServletResponse response) throws IOException, ServletException { response.setContentType("text/html"); String value = System.getProperty("card"); PrintWriter out = response.getWriter(); out.println("<center><h1>Your preffered method of payment is "+value+"</h1><br />"); out.println("Please Enter Card Number<input type =\"text\" name = \"number\"/><form action=\"http://codd.cs.gsu.edu:9999/cpereyra183/servlet/ServletC\"><input type =\"submit\" value=\"Continue\" /><input type=\"button\" value=\"Cancel\" /></center>"); } }} This is the servlet the first servlet redirects to all I do is try to do is output the text input public class ServletC extends HttpServlet { public void doGet(HttpServletRequest request, HttpServletResponse response) throws IOException, ServletException { response.setContentType("text/html"); String value = System.getProperty("card"); PrintWriter out = response.getWriter(); out.println(request.getParameter("number")); } }

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  • How to put data from List<string []> to dataGridView

    - by Kirill
    Try to put some data from List to dataGridView, but have some problem with it. Currently have method, that return me required List - please see picture below code public List<string[]> ReadFromFileBooks() { List<string> myIdCollection = new List<string>(); List<string[]> resultColl = new List<string[]>(); if (chooise == "all") { if (File.Exists(filePath)) { using (FileStream fs = new FileStream(filePath, FileMode.Open, FileAccess.Read)) { StreamReader sr = new StreamReader(fs); string[] line = sr.ReadToEnd().Split(new string[] { Environment.NewLine }, StringSplitOptions.RemoveEmptyEntries); foreach (string l in line) { string[] result = l.Split(','); foreach (string element in result) { myIdCollection.Add(element); } resultColl.Add(new string[] { myIdCollection[0], myIdCollection[1], myIdCollection[2], myIdCollection[3] }); myIdCollection.Clear(); } sr.Close(); return resultColl; } } .... this return to me required data in requred form (like list from arrays). After this, try to move it to the dataGridView, that already have 4 columns with names (because i'm sure, that no than 4 colums required) - please see pic below Try to put data in to dataGridView using next code private void radioButtonViewAll_CheckedChanged(object sender, EventArgs e) { TxtLibrary myList = new TxtLibrary(filePathBooks); myList.chooise = "all"; //myList.ReadFromFileBooks(); DataTable table = new DataTable(); foreach (var array in myList.ReadFromFileBooks()) { table.Rows.Add(array); } dataGridViewLibrary.DataSource = table; } But as result got error - "required more rows that exist in dataGridVIew", but accordint to what I'm see (pic above) q-ty of rows (4) equal q-ty of arrays element in List (4). Try to check result by putting additional temp variables - but it's ok - please see pic below Where I'm wrong? Maybe i use dataGridView not in correct way?

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  • Retrieve POST data without knowing exact number of fields

    - by James
    Hi all! I'm creating an online poll from scratch which will be held in a database. I'm working on getting a system set up so someone can create a new poll. I will be having the user fill out a simple HTML form with the Questions and Answers (there may be several answers). The user will be able to add multiple questions and multiple answers for each question. As the total number of questions and answers will be decided by the user, I need to create some clever PHP to cater for this - however many there are. When dealing with a static number of questions, it's simple. But I'm having trouble thinking of a way to get all the POST data into individual PHP variables so I can process them. I was thinking of using a foreach loop, anyone got any ideas? Sorry for the long winded description! If anyone needs anything clarified, I'd be happy to do so. My problem is that I can't get my head around how to deal with the POST values when I don't know exactly which element of the array will contain what. If things were static with a set number of questions and answers, I'd know $_POST[0] was Question1, etc Thank you! =)

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  • Send form with jQuery using keypress()

    - by kexxcream
    What I have so far: I have a form in PHP that contain the following: <input type="submit" id="0" name="0" value="This button"> <input type="submit" id="1" name="1" value="This button"> <input type="hidden" id="response" name="response" value="150"> The problem: I would like to send the response value together with either name=1 or name=0, depending on which button the user submit. However, this should be done using the keyboard letters A and S. If a user press the letter A then the value 0 should be submitted, and if S is pressed then the value 1 should be sent. The jQuery code: $(document).ready(function() { // listens for any navigation keypress activity $(document).keypress(function(e) { switch(e.which) { // user presses the "a" case 97: submitViaKeypress("0"); break; // user presses the "s" key case 115: submitViaKeypress("1"); break; } }); }); // shows a given element and hides all others function submitViaKeypress(element_id) { var response = $('#response').attr('value'); $.ajax({ type: "POST", url: "initiate.php", data: "response=" + response + "&" + element_id + "=" + element_id }); } Goal: That "initiate.php receive two POST variables (response and either 0 or 1).

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  • Read large amount of data from file in Java

    - by Crozin
    Hello I've got text file that contains 1 000 002 numbers in following formation: 123 456 1 2 3 4 5 6 .... 999999 100000 Now I need to read that data and allocate it to int variables (the very first two numbers) and all the rest (1 000 000 numbers) to an array int[]. It's not a hard task, but - it's horrible slow. My first attempt was java.util.Scanner: Scanner stdin = new Scanner(new File("./path")); int n = stdin.nextInt(); int t = stdin.nextInt(); int array[] = new array[n]; for (int i = 0; i < n; i++) { array[i] = stdin.nextInt(); } It works as excepted but it takes about 7500 ms to execute. I need to fetch that data in up to several hundred of milliseconds. Then I tried java.io.BufferedReader: Using BufferedReader.readLine() and String.split() I got the same results in about 1700 ms, but it's still too many. How can I read that amount of data in less that 1 second? The final result should be equal to: int n = 123; int t = 456; int array[] = { 1, 2, 3, 4, ..., 999999, 100000 };

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  • OutOfMemoryError creating a tree recursively?

    - by Alexander Khaos Greenstein
    root = new TreeNode(N); constructTree(N, root); private void constructTree(int N, TreeNode node) { if (N > 0) { node.setLeft(new TreeNode(N-1)); constructTree(N-1, node.getLeft()); } if (N > 1) { node.setMiddle(new TreeNode(N-2)); constructTree(N-2, node.getMiddle()); } if (N > 2) { node.setRight(new TreeNode(N-3)); constructTree(N-3, node.getRight()); } Assume N is the root number, and the three will create a left middle right node of N-1, N-2, N-3. EX: 5 / | \ 4 3 2 /|\ 3 2 1 etc. My GameNode class has the following variables: private int number; private GameNode left, middle, right; Whenever I construct a tree with an integer greater than 28, I get a OutOfMemoryError. Is my recursive method just incredibly inefficient or is this natural? Thanks!

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  • ReplaceAll not working as expected

    - by Tim Kemp
    Still early days with Mathematica so please forgive what is probably a very obvious question. I am trying to generate some parametric plots. I have: ParametricPlot[{ (a + b) Cos[t] - h Cos[(a + b)/b t], (a + b) Sin[t] - h Sin[(a + b)/b t]}, {t, 0, 2 \[Pi]}, PlotRange -> All] /. {a -> 2, b -> 1, h -> 1} No joy: the replacement rules are not applied and a, b and h remain undefined. If I instead do: Hold@ParametricPlot[{ (a + b) Cos[t] - h Cos[(a + b)/b t], (a + b) Sin[t] - h Sin[(a + b)/b t]}, {t, 0, 2 \[Pi]}, PlotRange -> All] /. {a -> 2, b -> 1, h -> 1} it looks like the rules ARE working, as confirmed by the output: Hold[ParametricPlot[{(2 + 1) Cos[t] - 1 Cos[(2 + 1) t], (2 + 1) Sin[t] - 1 Sin[(2 + 1) t]}, {t, 0, 2 \[Pi]}, PlotRange -> All]] Which is what I'd expect. Take the Hold off, though, and the ParametricPlot doesn't work. There's nothing wrong with the equations or the ParametricPlot itself, though, because I tried setting values for a, b and h in a separate expression (a=2; b=1; h=1) and I get my pretty double cardoid out as expected. So, what am I doing wrong with ReplaceAll and why are the transformation rules not working? This is another fundamentally important aspect of MMA that my OOP-ruined brain isn't understanding. I tried reading up on ReplaceAll and ParametricPlot and the closest clue I found was that "ParametricPlot has attribute HoldAll and evaluates f only after assigning specific numerical values to variables" which didn't help much or I wouldn't be here. Thanks.

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  • refactoring my code. My headers (Header Guard Issues)

    - by numerical25
    I had a post similar to this awhile ago based on a error I was getting. I was able to fix it but since then I been having trouble doing things because headers keep blocking other headers from using code. Honestly, these headers are confusing me and if anyone has any resources that will address these types of issues, that will be helpful. What I essentially want to do is be able to have rModel.h be included inside RenderEngine.h. every time I add rModel.h to RenderEngine.h, rModel.h is no longer able to use RenderEngine.h. (rModel.h has a #include of RenderEngine.h as well). So in a nutshell, RenderEngine and rModel need to use each others functionalities. On top of all this confusion, the Main.cpp needs to use RenderEngine. stdafx.h #include "targetver.h" #define WIN32_LEAN_AND_MEAN // Exclude rarely-used stuff from Windows headers // Windows Header Files: #include <windows.h> // C RunTime Header Files #include <stdlib.h> #include <malloc.h> #include <memory.h> #include <tchar.h> #include "resource.h" main.cpp #include "stdafx.h" #include "RenderEngine.h" #include "rModel.h" // Global Variables: RenderEngine go; rModel *g_pModel; ...code........... rModel.h #ifndef _MODEL_H #define _MODEL_H #include "stdafx.h" #include <vector> #include <string> #include "rTri.h" #include "RenderEngine.h" ........Code RenderEngine.h #pragma once #include "stdafx.h" #include "d3d10.h" #include "d3dx10.h" #include "dinput.h" #include "rModel.h" .......Code......

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  • Unsure how to come up with a good design

    - by Mewzer
    Hello there, I am having trouble coming up with a good design for a group of classes and was hoping that someone could give me some guidance on best practices. I have kept the classes and member functions generic to make the problem simpler. Essentially, I have three classes (lets call them A, B, and C) as follows: class A { ... int GetX( void ) const { return x; }; int GetY( void ) const { return y; }; private: B b; // NOTE: A "has-a" B int x; int y; }; class B { ... void SetZ( int value ) { z = value }; private: int z; C c; // NOTE: B "has-a" C }; class C { private: ... void DoSomething(int x, int y){ ... }; void DoSomethingElse( int z ){ ... }; }; My problem is as follows: Class A uses its member variables "x" and "y" a lot internally. Class B uses its member variable "z" a lot internally. Class B needs to call C::DoSomething(), but C::DoSomething() needs the values of X and Y in class A passed in as arguments. C::DoSomethingElse() is called from say another class (e.g. D), but it needs to invoke SetZ() in class B!. As you can see, it is a bit of a mess as all the classes need information from one another!. Are there any design patterns I can use?. Any ideas would be much appreciated ....

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  • How to parse a string (by a "new" markup) with R ?

    - by Tal Galili
    Hi all, I want to use R to do string parsing that (I think) is like a simplistic HTML parsing. For example, let's say we have the following two variables: Seq <- "GCCTCGATAGCTCAGTTGGGAGAGCGTACGACTGAAGATCGTAAGGtCACCAGTTCGATCCTGGTTCGGGGCA" Str <- ">>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<." Say that I want to parse "Seq" According to "Str", by using the legend here Seq: GCCTCGATAGCTCAGTTGGGAGAGCGTACGACTGAAGATCGTAAGGtCACCAGTTCGATCCTGGTTCGGGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. | | | | | | | || | +-----+ +--------------+ +---------------+ +---------------++-----+ | Stem 1 Stem 2 Stem 3 | | | +----------------------------------------------------------------+ Stem 0 Assume that we always have 4 stems (0 to 3), but that the length of letters before and after each of them can very. The output should be something like the following list structure: list( "Stem 0 opening" = "GCCTCGA", "before Stem 1" = "TA", "Stem 1" = list(opening = "GCTC", inside = "AGTTGGGA", closing = "GAGC" ), "between Stem 1 and 2" = "G", "Stem 2" = list(opening = "TACGA", inside = "CTGAAGA", closing = "TCGTA" ), "between Stem 2 and 3" = "AGGtC", "Stem 3" = list(opening = "ACCAG", inside = "TTCGATC", closing = "CTGGT" ), "After Stem 3" = "", "Stem 0 closing" = "TCGGGGC" ) I don't have any experience with programming a parser, and would like advices as to what strategy to use when programming something like this (and any recommended R commands to use). What I was thinking of is to first get rid of the "Stem 0", then go through the inner string with a recursive function (let's call it "seperate.stem") that each time will split the string into: 1. before stem 2. opening stem 3. inside stem 4. closing stem 5. after stem Where the "after stem" will then be recursively entered into the same function ("seperate.stem") The thing is that I am not sure how to try and do this coding without using a loop. Any advices will be most welcomed.

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  • Could someone help me debug my app (not very big)?

    - by Alex
    Not sure if this kind of help is accepted to ask for here, tell me if it isn't. It has to get done before tomorrow, it's not entirerly finished but it should work somewhat ok by now. I'm trying to use the Eclipse debugger (not very used to it). I have my top-level or main class, which is Game, in which I have a constructor and a main method. In the main method I create a new "Game", initiating the constructor. public static void main(String[] args){ Game chess = new Game(); } public Game(){ Board board = new Board(); That's the first thing the debugger reacts to: Thread [main] (Suspended) ClassNotFoundException(Object).<init>() line: 20 [local variables unavailable] ClassNotFoundException(Throwable).<init>(String, Throwable) line: 217 ClassNotFoundException(Exception).<init>(String, Throwable) line: not available ClassNotFoundException.<init>(String) line: not available URLClassLoader$1.run() line: not available AccessController.doPrivileged(PrivilegedExceptionAction<T>, AccessControlContext) line: not available [native method] Launcher$ExtClassLoader(URLClassLoader).findClass(String) line: not available Launcher$ExtClassLoader.findClass(String) line: not available Launcher$ExtClassLoader(ClassLoader).loadClass(String, boolean) line: not available Launcher$AppClassLoader(ClassLoader).loadClass(String, boolean) line: not available Launcher$AppClassLoader.loadClass(String, boolean) line: not available Launcher$AppClassLoader(ClassLoader).loadClass(String) line: not available Game.<init>() line: 15 Game.main(String[]) line: 11 Line 11 is the one line in my main method, line 15 is the instantiation of "board".

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  • Parallelize or vectorize all-against-all operation on a large number of matrices?

    - by reve_etrange
    I have approximately 5,000 matrices with the same number of rows and varying numbers of columns (20 x ~200). Each of these matrices must be compared against every other in a dynamic programming algorithm. In this question, I asked how to perform the comparison quickly and was given an excellent answer involving a 2D convolution. Serially, iteratively applying that method, like so list = who('data_matrix_prefix*') H = cell(numel(list),numel(list)); for i=1:numel(list) for j=1:numel(list) if i ~= j eval([ 'H{i,j} = compare(' char(list(i)) ',' char(list(j)) ');']); end end end is fast for small subsets of the data (e.g. for 9 matrices, 9*9 - 9 = 72 calls are made in ~1 s). However, operating on all the data requires almost 25 million calls. I have also tried using deal() to make a cell array composed entirely of the next element in data, so I could use cellfun() in a single loop: # who(), load() and struct2cell() calls place k data matrices in a 1D cell array called data. nextData = cell(k,1); for i=1:k [nextData{:}] = deal(data{i}); H{:,i} = cellfun(@compare,data,nextData,'UniformOutput',false); end Unfortunately, this is not really any faster, because all the time is in compare(). Both of these code examples seem ill-suited for parallelization. I'm having trouble figuring out how to make my variables sliced. compare() is totally vectorized; it uses matrix multiplication and conv2() exclusively (I am under the impression that all of these operations, including the cellfun(), should be multithreaded in MATLAB?). Does anyone see a (explicitly) parallelized solution or better vectorization of the problem?

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  • Can a member struct be zero-init from the constructor initializer list without calling memset?

    - by selbie
    Let's say I have the following structure declaration (simple struct with no constructor). struct Foo { int x; int y; int z; char szData[DATA_SIZE]; }; Now let's say this struct is a member of a C++ class as follows: class CFoobar { Foo _foo; public: CFoobar(); }; If I declare CFoobar's constructor as follows: CFoobar::CFoobar() { printf("_foo = {%d, %d, %d}\n", _foo.x, _foo.y,_foo.z); for (int x = 0; x < 100; x++) printf("%d\n", _foo.szData[x]); } As you would expect, when CFoobar's constructor runs, garbage data gets printed out Obviously, the easy fix is to memset or ZeroMemory &_foo. It's what I've always done... However, I did notice that if add _foo to the constructor's initialization list with no parameters as follows: CFoobar::CFoobar() : _foo() { That this appears to zero-out the member variables of _foo. At least that was the case with g++ on linux. Now here's my question: Is this standard C++, or is this compiler specific behavior? If it's standard behavior, can someone quote me a reference from an official source? Any "gotchas" in regards to implicit zero-init behavior with more complicated structs and classes?

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  • Write-Only Reference in C++?

    - by Robert Mason
    Is there a way to code a write-only reference to an object? For example, suppose there was a mutex class: template <class T> class mutex { protected: T _data; public: mutex(); void lock(); //locks the mutex void unlock(); //unlocks the mutex T& data(); //returns a reference to the data, or throws an exception if lock is unowned }; Is there a way to guarantee that one couldn't do this: mutex<type> foo; T& ref; foo.lock(); ref = foo.data(); foo.unlock(); //I have a unguarded reference to foo now On the other hand, is it even worth it? I know that some people assume that programmers won't deliberately clobber the system, but then, why do we have private variables in the first place, eh? It'd be nice to just say it's "Undefined Behavior", but that just seems a little bit too insecure.

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  • safe structures embedded systems

    - by user405633
    I have a packet from a server which is parsed in an embedded system. I need to parse it in a very efficient way, avoiding memory issues, like overlapping, corrupting my memory and others variables. The packet has this structure "String A:String B:String C". As example, here the packet received is compounded of three parts separated using a separator ":", all these parts must be accesibles from an structure. Which is the most efficient and safe way to do this. A.- Creating an structure with attributes (partA, PartB PartC) sized with a criteria based on avoid exceed this sized from the source of the packet, and attaching also an index with the length of each part in a way to avoid extracting garbage, this part length indicator could be less or equal to 300 (ie: part B). typedef struct parsedPacket_struct { char partA[2];int len_partA; char partB[300];int len_partB; char partC[2];int len_partC; }parsedPacket; The problem here is that I am wasting memory, because each structure should copy the packet content to each the structure, is there a way to only save the base address of each part and still using the len_partX.

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