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  • Is the field BusID necessary in XF86Config?

    - by Greg
    Hello, I am using a cluster of machines running on Ubuntu 10.04 LTS which are supposed to be homogeneous, but apparently they are not. In particular, I am configuring the X server on these machines, and I pushed a /etc/X11/XF86Config that includes the following section: Section "Device" Identifier "Device0" Driver "nvidia" VendorName "NVIDIA Corporation" BusID "PCI:5:0:0" EndSection The problem is that the BusID of the graphic card is PCI:5:0:0 for some machines, and PCI:3:0:0 for others. Is there a way that the X server automatically detects the appropriate Device (based on the name for instance)? Thanks,

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  • Installing sqlite gem fails on AWS Linux instance with sqlite-devel libraries installed

    - by Scott
    Hi, I'm running an instance built off ami-595a0a1c. I am trying to install the sqlite3 (or sqlite) gem and it's failing with the below error: $ sudo gem install sqlite3 Building native extensions. This could take a while... ERROR: Error installing sqlite3: ERROR: Failed to build gem native extension. /usr/bin/ruby extconf.rb checking for sqlite3.h... no sqlite3.h is missing. Try 'port install sqlite3 +universal' or 'yum install sqlite3-devel' and check your shared library search path (the location where your sqlite3 shared library is located). extconf.rb failed * Could not create Makefile due to some reason, probably lack of necessary libraries and/or headers. Check the mkmf.log file for more details. You may need configuration options. Provided configuration options: --with-opt-dir --without-opt-dir --with-opt-include --without-opt-include=${opt-dir}/include --with-opt-lib --without-opt-lib=${opt-dir}/lib --with-make-prog --without-make-prog --srcdir=. --curdir --ruby=/usr/bin/ruby --with-sqlite3-dir --without-sqlite3-dir --with-sqlite3-include --without-sqlite3-include=${sqlite3-dir}/include --with-sqlite3-lib --without-sqlite3-lib=${sqlite3-dir}/lib Gem files will remain installed in /usr/lib64/ruby/gems/1.8/gems/sqlite3-1.3.3 for inspection. Results logged to /usr/lib64/ruby/gems/1.8/gems/sqlite3-1.3.3/ext/sqlite3/gem_make.out Typically, this just means you need to install the development libraries and everything is cool. However, I have installed the sqlite-devel packages and still no dice. Since this is the Amazon Linux instance, I'd rather not add more repositories than the ones Amazon provides if possible. What can i do to get this thing to compile? Thanks for any insight! From a brand new instance, here's what I've done: $ sudo yum install rubygems ruby-devel $ sudo gem update --system $ sudo gem install rails $ rails new app $ cd app $ rails server Could not find gem 'sqlite3 (= 0)' in any of the gem sources listed in your Gemfile. $ sudo yum install sqlite-devel $ sudo gem install sqlite (or sqlite3 -- same result) See breakage above

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  • Shell command slow when using pipe, fast with intermediate file

    - by plang
    Does anyone understand this huge difference in processing time, when using an intermediate file, or when using a pipe? I'm converting tiff to pdf using standard tools on a fresh debian squeeze server. A standard way of doing this is to convert to ps first. Without pipe: root@web5:~# time tiff2ps test.tif > test.ps real 0m0.860s user 0m0.744s sys 0m0.112s root@web5:~# time ps2pdf13 -sPAPERSIZE=a4 test.ps > test.pdf real 0m0.667s user 0m0.612s sys 0m0.060s With pipe: root@web5:~# time tiff2ps test.tif | ps2pdf13 -sPAPERSIZE=a4 - > test.pdf real 1m6.098s user 0m15.861s sys 0m50.9 During the last command, gs process is at 100% all the time. Update: Here is an strace output for the ps generation: root@web5:~# strace tiff2ps test.tif > test.ps execve("/usr/bin/tiff2ps", ["tiff2ps", "test.tif"], [/* 28 vars */]) = 0 brk(0) = 0x1395000 access("/etc/ld.so.nohwcap", F_OK) = -1 ENOENT (No such file or directory) mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb5a1937000 access("/etc/ld.so.preload", R_OK) = -1 ENOENT (No such file or directory) open("/etc/ld.so.cache", O_RDONLY) = 3 fstat(3, {st_mode=S_IFREG|0644, st_size=21735, ...}) = 0 mmap(NULL, 21735, PROT_READ, MAP_PRIVATE, 3, 0) = 0x7fb5a1931000 close(3) = 0 access("/etc/ld.so.nohwcap", F_OK) = -1 ENOENT (No such file or directory) open("/usr/lib/libtiff.so.4", O_RDONLY) = 3 read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0P\200\0\0\0\0\0\0"..., 832) = 832 fstat(3, {st_mode=S_IFREG|0644, st_size=405128, ...}) = 0 mmap(NULL, 2501416, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb5a14b9000 mprotect(0x7fb5a151a000, 2093056, PROT_NONE) = 0 mmap(0x7fb5a1719000, 12288, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x60000) = 0x7fb5a1719000 close(3) = 0 access("/etc/ld.so.nohwcap", F_OK) = -1 ENOENT (No such file or directory) open("/usr/lib/libjpeg.so.62", O_RDONLY) = 3 read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\3408\0\0\0\0\0\0"..., 832) = 832 fstat(3, {st_mode=S_IFREG|0644, st_size=145048, ...}) = 0 mmap(NULL, 2240080, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb5a1296000 mprotect(0x7fb5a12b9000, 2093056, PROT_NONE) = 0 mmap(0x7fb5a14b8000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x22000) = 0x7fb5a14b8000 close(3) = 0 access("/etc/ld.so.nohwcap", F_OK) = -1 ENOENT (No such file or directory) open("/usr/lib/libz.so.1", O_RDONLY) = 3 read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\260\"\0\0\0\0\0\0"..., 832) = 832 fstat(3, {st_mode=S_IFREG|0644, st_size=93936, ...}) = 0 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb5a1930000 mmap(NULL, 2188976, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb5a107f000 mprotect(0x7fb5a1096000, 2093056, PROT_NONE) = 0 mmap(0x7fb5a1295000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x16000) = 0x7fb5a1295000 close(3) = 0 access("/etc/ld.so.nohwcap", F_OK) = -1 ENOENT (No such file or directory) open("/lib/libm.so.6", O_RDONLY) = 3 read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\360>\0\0\0\0\0\0"..., 832) = 832 fstat(3, {st_mode=S_IFREG|0644, st_size=530736, ...}) = 0 mmap(NULL, 2625768, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb5a0dfd000 mprotect(0x7fb5a0e7d000, 2097152, PROT_NONE) = 0 mmap(0x7fb5a107d000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x80000) = 0x7fb5a107d000 close(3) = 0 access("/etc/ld.so.nohwcap", F_OK) = -1 ENOENT (No such file or directory) open("/lib/libc.so.6", O_RDONLY) = 3 read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\240\355\1\0\0\0\0\0"..., 832) = 832 fstat(3, {st_mode=S_IFREG|0755, st_size=1437064, ...}) = 0 mmap(NULL, 3545160, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7fb5a0a9b000 mprotect(0x7fb5a0bf4000, 2093056, PROT_NONE) = 0 mmap(0x7fb5a0df3000, 20480, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x158000) = 0x7fb5a0df3000 mmap(0x7fb5a0df8000, 18504, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7fb5a0df8000 close(3) = 0 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb5a192f000 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb5a192e000 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb5a192d000 arch_prctl(ARCH_SET_FS, 0x7fb5a192e700) = 0 mprotect(0x7fb5a0df3000, 16384, PROT_READ) = 0 mprotect(0x7fb5a107d000, 4096, PROT_READ) = 0 mprotect(0x7fb5a1939000, 4096, PROT_READ) = 0 munmap(0x7fb5a1931000, 21735) = 0 open("test.tif", O_RDONLY) = 3 brk(0) = 0x1395000 brk(0x13b6000) = 0x13b6000 read(3, "II*\0\10\0\0\0", 8) = 8 fstat(3, {st_mode=S_IFREG|0644, st_size=1825656, ...}) = 0 mmap(NULL, 1825656, PROT_READ, MAP_SHARED, 3, 0) = 0x7fb5a176f000 open("/proc/meminfo", O_RDONLY) = 4 fstat(4, {st_mode=S_IFREG|0444, st_size=0, ...}) = 0 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb5a1936000 read(4, "MemTotal: 2090844 kB\nMemF"..., 1024) = 1024 close(4) = 0 munmap(0x7fb5a1936000, 4096) = 0 write(2, "TIFFReadDirectory: ", 19TIFFReadDirectory: ) = 19 write(2, "Warning, ", 9Warning, ) = 9 write(2, "test.tif: wrong data type 7 for "..., 59test.tif: wrong data type 7 for "RichTIFFIPTC"; tag ignored) = 59 write(2, ".\n", 2. ) = 2 gettimeofday({1334836895, 374666}, NULL) = 0 fstat(1, {st_mode=S_IFREG|0664, st_size=0, ...}) = 0 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb5a1936000 open("/etc/localtime", O_RDONLY) = 4 fstat(4, {st_mode=S_IFREG|0644, st_size=1892, ...}) = 0 fstat(4, {st_mode=S_IFREG|0644, st_size=1892, ...}) = 0 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fb5a1935000 read(4, "TZif2\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\4\0\0\0\4\0\0\0\0"..., 4096) = 1892 lseek(4, -1217, SEEK_CUR) = 675 read(4, "TZif2\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\6\0\0\0\6\0\0\0\0"..., 4096) = 1217 close(4) = 0 munmap(0x7fb5a1935000, 4096) = 0 write(1, "%!PS-Adobe-3.0 EPSF-3.0\n%%Creato"..., 4096) = 4096 write(1, "fffffffffffffffffffffffffffff\nff"..., 4096) = 4096 write(1, "ffffffffffffffffffff\nfffffffffff"..., 4096) = 4096 write(1, "fffffffffff\nffffffffffffffffffff"..., 4096) = 4096 write(1, "ff\nfffffffffffffffffffffffffffff"..., 4096) = 4096 write(1, "ffffffffffffffffffffffffffffffff"..., 4096) = 4096 write(1, "ffffffffffffffffffffffffffffffff"..., 4096) = 4096 write(1, "ffffffffffffffffffffffffffffffff"..., 4096) = 4096 write(1, "ffffffffffffffffffffffffffffffff"..., 4096) = 4096 write(1, "ffffffffffffffffffffffff\nfffffff"..., 4096) = 4096 Here is an strace output for the piped version: PS generation seems to be much slower when output is piped into ps2pdf13. root@web5:~# strace tiff2ps test.tif | ps2pdf13 -sPAPERSIZE=a4 - > test.pdf execve("/usr/bin/tiff2ps", ["tiff2ps", "test.tif"], [/* 28 vars */]) = 0 brk(0) = 0x1b97000 access("/etc/ld.so.nohwcap", F_OK) = -1 ENOENT (No such file or directory) mmap(NULL, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f9208bb1000 access("/etc/ld.so.preload", R_OK) = -1 ENOENT (No such file or directory) open("/etc/ld.so.cache", O_RDONLY) = 3 fstat(3, {st_mode=S_IFREG|0644, st_size=21735, ...}) = 0 mmap(NULL, 21735, PROT_READ, MAP_PRIVATE, 3, 0) = 0x7f9208bab000 close(3) = 0 access("/etc/ld.so.nohwcap", F_OK) = -1 ENOENT (No such file or directory) open("/usr/lib/libtiff.so.4", O_RDONLY) = 3 read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0P\200\0\0\0\0\0\0"..., 832) = 832 fstat(3, {st_mode=S_IFREG|0644, st_size=405128, ...}) = 0 mmap(NULL, 2501416, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7f9208733000 mprotect(0x7f9208794000, 2093056, PROT_NONE) = 0 mmap(0x7f9208993000, 12288, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x60000) = 0x7f9208993000 close(3) = 0 access("/etc/ld.so.nohwcap", F_OK) = -1 ENOENT (No such file or directory) open("/usr/lib/libjpeg.so.62", O_RDONLY) = 3 read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\3408\0\0\0\0\0\0"..., 832) = 832 fstat(3, {st_mode=S_IFREG|0644, st_size=145048, ...}) = 0 mmap(NULL, 2240080, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7f9208510000 mprotect(0x7f9208533000, 2093056, PROT_NONE) = 0 mmap(0x7f9208732000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x22000) = 0x7f9208732000 close(3) = 0 access("/etc/ld.so.nohwcap", F_OK) = -1 ENOENT (No such file or directory) open("/usr/lib/libz.so.1", O_RDONLY) = 3 read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\260\"\0\0\0\0\0\0"..., 832) = 832 fstat(3, {st_mode=S_IFREG|0644, st_size=93936, ...}) = 0 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f9208baa000 mmap(NULL, 2188976, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7f92082f9000 mprotect(0x7f9208310000, 2093056, PROT_NONE) = 0 mmap(0x7f920850f000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x16000) = 0x7f920850f000 close(3) = 0 access("/etc/ld.so.nohwcap", F_OK) = -1 ENOENT (No such file or directory) open("/lib/libm.so.6", O_RDONLY) = 3 read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\360>\0\0\0\0\0\0"..., 832) = 832 fstat(3, {st_mode=S_IFREG|0644, st_size=530736, ...}) = 0 mmap(NULL, 2625768, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7f9208077000 mprotect(0x7f92080f7000, 2097152, PROT_NONE) = 0 mmap(0x7f92082f7000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x80000) = 0x7f92082f7000 close(3) = 0 access("/etc/ld.so.nohwcap", F_OK) = -1 ENOENT (No such file or directory) open("/lib/libc.so.6", O_RDONLY) = 3 read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\240\355\1\0\0\0\0\0"..., 832) = 832 fstat(3, {st_mode=S_IFREG|0755, st_size=1437064, ...}) = 0 mmap(NULL, 3545160, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7f9207d15000 mprotect(0x7f9207e6e000, 2093056, PROT_NONE) = 0 mmap(0x7f920806d000, 20480, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x158000) = 0x7f920806d000 mmap(0x7f9208072000, 18504, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7f9208072000 close(3) = 0 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f9208ba9000 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f9208ba8000 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f9208ba7000 arch_prctl(ARCH_SET_FS, 0x7f9208ba8700) = 0 mprotect(0x7f920806d000, 16384, PROT_READ) = 0 mprotect(0x7f92082f7000, 4096, PROT_READ) = 0 mprotect(0x7f9208bb3000, 4096, PROT_READ) = 0 munmap(0x7f9208bab000, 21735) = 0 open("test.tif", O_RDONLY) = 3 brk(0) = 0x1b97000 brk(0x1bb8000) = 0x1bb8000 read(3, "II*\0\10\0\0\0", 8) = 8 fstat(3, {st_mode=S_IFREG|0644, st_size=1825656, ...}) = 0 mmap(NULL, 1825656, PROT_READ, MAP_SHARED, 3, 0) = 0x7f92089e9000 open("/proc/meminfo", O_RDONLY) = 4 fstat(4, {st_mode=S_IFREG|0444, st_size=0, ...}) = 0 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f9208bb0000 read(4, "MemTotal: 2090844 kB\nMemF"..., 1024) = 1024 close(4) = 0 munmap(0x7f9208bb0000, 4096) = 0 write(2, "TIFFReadDirectory: ", 19TIFFReadDirectory: ) = 19 write(2, "Warning, ", 9Warning, ) = 9 write(2, "test.tif: wrong data type 7 for "..., 59test.tif: wrong data type 7 for "RichTIFFIPTC"; tag ignored) = 59 write(2, ".\n", 2. ) = 2 gettimeofday({1334836513, 114140}, NULL) = 0 fstat(1, {st_mode=S_IFIFO|0600, st_size=0, ...}) = 0 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f9208bb0000 open("/etc/localtime", O_RDONLY) = 4 fstat(4, {st_mode=S_IFREG|0644, st_size=1892, ...}) = 0 fstat(4, {st_mode=S_IFREG|0644, st_size=1892, ...}) = 0 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f9208baf000 read(4, "TZif2\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\4\0\0\0\4\0\0\0\0"..., 4096) = 1892 lseek(4, -1217, SEEK_CUR) = 675 read(4, "TZif2\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\6\0\0\0\6\0\0\0\0"..., 4096) = 1217 close(4) = 0 munmap(0x7f9208baf000, 4096) = 0 write(1, "%!PS-Adobe-3.0 EPSF-3.0\n%%Creato"..., 4096) = 4096 write(1, "fffffffffffffffffffffffffffff\nff"..., 4096) = 4096 write(1, "ffffffffffffffffffff\nfffffffffff"..., 4096) = 4096 write(1, "fffffffffff\nffffffffffffffffffff"..., 4096) = 4096 write(1, "ff\nfffffffffffffffffffffffffffff"..., 4096) = 4096 write(1, "ffffffffffffffffffffffffffffffff"..., 4096) = 4096 write(1, "ffffffffffffffffffffffffffffffff"..., 4096) = 4096 write(1, "ffffffffffffffffffffffffffffffff"..., 4096) = 4096 write(1, "ffffffffffffffffffffffffffffffff"..., 4096) = 4096 ...etc...

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  • Ganglia and how it communicates

    - by MikeKulls
    I'm a little confused about how Ganglia sends information around and have found conflicting information on the web. I would have thought that the gmond process would either send info to gmetad at a regular interval or gmetad would request info from the various instances of gmond. At least one online article states this is how it works but from what I understand this is incorrect. It appears that you configure all gmond processes to send their info to a central gmond process and gmetad will request info from that central gmond. Is that correct? In my case I have 6 servers sending their information to 1 central server. If I set gmetad to get it's information from the central server then I get information from all 6 servers, all good.. Their weird thing is that if I point gmetad to one of the 6 servers then I still get info from all 6 servers. How is it that server 1 in my cluster if getting stats from all the other servers?

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  • OpenVZ vs Xen, how much difference in performance?

    - by Aleksandr Levchuk
    There is a Xen vs. KVM in performance question on ServerFault. What will be the performance difference if the choice is between Xen and OpenVZ? How is it best to measure? Some may say "you're comparing apples and oranges" but I have to choose one of the two and it needs to be wise choice. Performance is most important to us. We may switching to Xen from OpenVZ because Xen is more ubiquitous but only if performance difference is not significant. In January 2011 I'm thinking of doing a head to head performance comparison - here is my project proposal to our Bioinformatics facility director.

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  • Bluetooth not seeing mouse (Fedora)

    - by Chris
    I have a Lenovo S10 'netbook' that I've installed Fedora 17 ("LXDE spin") on. So far pretty much everything works great, except, the on-board Bluetooth. lsusb shows the controller present (0a5c:2101 Broadcom Corp. Bluetooth Controller), hcitool dev shows hci0 present, but when I put my mouse ("Lenovo Bluetooth Laser Mouse," which works perfectly paired with a MacBook Pro, MacBook Air, Mac mini, and Lenovo SL500 (with a USB dongle; running Windows 7)) into pairing mode and run hcitool scan (reports "Scanning ..." and, without further information or error message, returns to the shell prompt), blueman-manager, or bluetooth-wizard (from the gnome-bluetooth package) and try to detect the mouse, I get nothing... Frustrating! Thanks anyone who can point me in the right direction!

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  • How could I easily pack a directory to an ext4 loop partition image?

    - by Alvin Wong
    I would like to pack the content of a directory into an ext4 partition image easily, without mounting a loop device. Background: I am building a version of Android which will mount system partitions as a loop device for ARM. Though I can create those partition images by hand using loop devices, it is very troublesome. I want to use an sh script to automatically do the work, and without needing to loop mount the dd-created image and use cp -rp. The best is to directly pack the files into an image file. Question: Is there any simple command-line tools without needing loop mount and root permission that can pack files into an ext4 partition image?

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  • VIM zsh, bash and colors in command line on Ubuntu

    - by Jacek Wysocki
    I have problem with VIM command line when calling system commands. e.g. !ls, all command output colors aren't parsed by VIM. My system is Ubuntu 12.04 LTS with VIM 7.3.429 from Ubuntu repositories. Is there any workaround for this problem? EDIT: My vimrc file :!echo $TERM in VIM returns : dumb EDIT2: I found a simple workaround but it's not perfect if [ "$VIM" ] && [ "$TERM" = "dumb" ] then # For gvim's monochromatic :shell PS1='\n\u@\h \w\n\$ ' unalias ls unalias grep fi (It's working on bash)

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  • Why a SIGHUP signal to httpd kills the tomcat process?

    - by Geo
    I have a server with a tomcat process binding to port 80 and a httpd processes binding to port 5000. For some reason every time any process send a SIGHUP signal to httpd process my tomcat process disappears without error or anything. I fixed the issue on the server the following way, added an explicit ServerName directive in the httpd.conf and that fixed the issue. I still don't understand why the SIGHUP to httpd killed the tomcat process. NOTE 1: I replicated the kill signal with the following command: find out what the httpd pid is. cat /etc/httpd/run/httpd.pid 4056 then kill with a sighup signal kill -s SIGHUP 4056 NOTE 2: We troubleshoot the issue and find that logrotate running every morning at 4am was sending a SIGHUP signal to realease the logs to be able to rotate them, thus killing tomcat as well.

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  • XFS and loss of data when power goes down

    - by culebrón
    Each time electricity goes down, my desktop (without UPS) loses some temporary information. Opera can lose settings, history, cache, or mail accounts (Thanks heavens I was wise to use IMAP). Partially or all together. a whole file (complete and save) in Geany appeared empty (and I didn't commit it to Git) rhythmbox lost all podcasts subscription data I'm afraid there are other losses I just didn't see. What's the reason? A memory files cache, a mem-disk? Or non-atomic file writes in xfs? I have Ubuntu 9.10 and XFS on both / and /home partitions. Is ext4 safer in such circumstances? I've seen ext3 is faster. Is it as safe as *4? Given that the apartment I rent is connected to a common bus and 1 safety switch for several apartments, and the neighbors - alone or together - overload it at least once every week, the lights go down often enough for this to be an issue.

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  • Files listed by bash but unaccessible

    - by Cerin
    What would cause the following behavior on an Ubuntu 12.04 system? I've SSHed into a machine as the "ubuntu" user. Running ls -lah /data/* shows dozens of non-empty files (e.g. file1.txt, file2.txt, etc), all owned by the "ubuntu" user/group, and with full read/write access. If I try to cat /data/file1.txt, bash gives me the error "cat: /data/file1.txt: No such file or directory" In short, ls is listing files, but in every other way, the files essentially don't exist. I can't cat them or read them in any way. Even giving all the files 777 permission doesn't change anything. This is really bizarre. What's going on here?

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  • What is SASL/GSSAPI?

    - by NT332
    Numerous times i have met the expression SASL/GSSAPI. I have searched Google many times, but i simply do no understand what it is and how it relate to Kerberos. Anybody that have a simple explanation on this?

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  • Tweaks on nvidia-settings only working when the program is opened

    - by Igoru
    I have two monitors. The master one (17") is 1yo, and the secondary (15") is really old, like 4yo. This old screen is having problems displaying colors... They are a little bit darker, what is a problem when I'm viewing pics. I have a GeForce 9800, so I changed some settings inside nvidia-settings, that fit better with this second screen. But those settings just are applied when I first open nvidia-settings. First time I configured this, it worked. I turned off computer, next day turned it on, and screen is dark again. As soon as I open nvidia-settings again, the screens get lighter again! How can I make those settings permanent and loaded at startup?

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  • How can I repair my USB drive?

    - by yurko
    USB drive is in read only state and I can't repair it. First of all I tried erase it using dd: root@yurko-laptop:/home/yurko-laptop# ls -l /dev/disk/by-id | grep usb lrwxrwxrwx 1 root root 9 ??? 18 23:45 usb-Generic_Flash_Disk_C173828A-0:0 -> ../../sdb lrwxrwxrwx 1 root root 10 ??? 18 23:45 usb-Generic_Flash_Disk_C173828A-0:0-part1 -> ../../sdb1 root@yurko-laptop:/home/yurko-laptop# dd if=/dev/zero of=/dev/sdb dd: ?????? ? «/dev/sdb»: ?? ?????????? ????????? ????? 8257537+0 ??????? ??????? 8257536+0 ??????? ???????? ??????????? 4227858432 ????? (4,2 GB), 942,633 c, 4,5 MB/c After that I wanted to create new filesystem using fdisk: root@yurko-laptop:/home/yurko-laptop# fdisk /dev/sdb You will not be able to write the partition table. WARNING: DOS-compatible mode is deprecated. It's strongly recommended to switch off the mode (command 'c') and change display units to sectors (command 'u'). Command (m for help): p Disk /dev/sdb: 4227 MB, 4227858432 bytes 4 heads, 63 sectors/track, 32768 cylinders Units = cylinders of 252 * 512 = 129024 bytes Sector size (logical/physical): 512 bytes / 512 bytes I/O size (minimum/optimal): 512 bytes / 512 bytes Disk identifier: 0x00000000 Device Boot Start End Blocks Id System /dev/sdb1 18 32768 4126596 b W95 FAT32 Command (m for help): fdisk showed that the partition still exists and I can't write the partition table. I tried to delete the existing partition: Command (m for help): d Selected partition 1 Command (m for help): w Unable to write /dev/sdb root@yurko-laptop:/home/yurko-laptop# Why am I not be able to write the partition table? Does it mean that some hardware failure occurred? And is it possible to repair the current USB drive? I've tried to use hdparm and it showed that the readonly flag is on: root@yurko-laptop:/home/yurko-laptop# hdparm /dev/sdb /dev/sdb: SG_IO: bad/missing sense data, sb[]: f0 00 05 00 00 00 00 0a 00 00 00 00 26 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 multcount = 0 (off) readonly = 1 (on) readahead = 256 (on) geometry = 1016/131/62, sectors = 8257536, start = 0

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  • Why do password entries over ssh take so long?

    - by Dean
    When I'm ssh'd into my server, any time I enter my password, there's a 40 second delay before the server responds. This occurs when logging in, as well as whenever I run a command via sudo. The delay does not happen when I run su and enter my password however. Using the -v flag for ssh doesn't show anything during this time. Looking at Wireshark, all traffic between the two machines stops while this is happening. Any idea what's happening, or advice on how to investigate this? The server is running Debian squeeze (6.0.4)

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  • Bash Script to Back Up Backs Up Itself

    - by Jay LaCroix
    I have the following bash script that creates a tar.gz of my filesystem on a Kubuntu PC. The problem is, that it also tries to backup the tar.gz backup file, even though I am storing the backup in /tmp and omitting /tmp from the backup. I am wondering why it's backing up the file in /tmp even though I told it not to. #!/bin/bash # init DATE=$(date +20%y%m%d) sudo tar -cvpzf /tmp/`hostname`_$DATE.tar.gz \ --exclude=/proc \ --exclude=/lost+found \ --exclude=/sys \ --exclude=/mnt \ --exclude=/media \ --exclude=/dev \ --exclude=/tmp \ --exclude=/home/jlacroix/Desktop \ --exclude=/home/jlacroix/Documents \ --exclude=/home/jlacroix/Music \ --exclude=/home/jlacroix/Pictures \ --exclude=/home/jlacroix/Projects \ --exclude=/home/jlacroix/Roms \ --exclude=/home/jlacroix/Videos \ --exclude=/home/jlacroix/.VirtualBox\ VMs \ --exclude=/home/jlacroix/.SpiderOak \ / scp /tmp/`hostname`_$DATE.tar.gz jlacroix@Pluto:/share/Recovery/Snapshots sudo rm /tmp/`hostname`_$DATE.tar.gz

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  • Transparent Squid : Logging client ip problem

    - by llazzaro
    Hello, I am using the following rules in iptables in my network to use a transparent proxy * iptables -t nat -A PREROUTING -i eth0 -s ! squid-box -p tcp --dport 80 -j DNAT --to squid-box:3128 * iptables -t nat -A POSTROUTING -o eth0 -s local-network -d squid-box -j SNAT --to iptables-box * iptables -A FORWARD -s local-network -d squid-box -i eth0 -o eth0 -p tcp --dport 3128 -j ACCEPT But my squid log, always logs gateway IP (172.16.0.1) Do you know an alternative to not lose client IP? (of course avoid saing manual proxy setup!)

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  • Can I find which script outputs which error?

    - by ibrahim
    There is a script which calls other scripts and they call others... I don't know exactly which scripts are called and how many of them. I only know that some of them are adding iptables rules and I get this error when I call root script. iptables: No chain/target/match by that name. iptables: No chain/target/match by that name. My problem is that I can not find which script outputs this errors. Is there any way or tool to learn that?

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  • Enabling mod_rewrite on Amazon Linux

    - by L. De Leo
    I'm trying to enable mod_rewrite on an Amazon Linux instance. My Directory directives look like this: <Directory /> Order deny,allow Allow from all Options None AllowOverride None </Directory> <Directory "/var/www/vhosts"> Order allow,deny Allow from all Options None AllowOverride All </Directory> And then further down in httpd.conf I have the LoadModule directive: ... other modules... #LoadModule substitute_module modules/mod_substitute.so LoadModule rewrite_module modules/mod_rewrite.so #LoadModule proxy_module modules/mod_proxy.so ... other modules... I have commented out all the Apache modules not needed by Wordpress. Still when I issue http restart and then check the loaded modules with /usr/sbin/httpd -l I get only: [root@foobar]# /usr/sbin/httpd -l Compiled in modules: core.c prefork.c http_core.c mod_so.c Inside the virtual host containing the Wordpress site I have an .htaccess containing: # BEGIN WordPress <IfModule mod_rewrite.c> RewriteEngine On RewriteBase / RewriteRule ^index\.php$ - [L] RewriteCond %{REQUEST_FILENAME} !-f RewriteCond %{REQUEST_FILENAME} !-d RewriteRule . /index.php [L] </IfModule> # END WordPress The .htaccess is owned by apache which is the user apache runs under. The apachectl -t command returns Syntax OK What am I doing wrong? What should I check?

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  • SSH: How to change value in config file in one command

    - by Brian Graham
    How can I change the value of, let's say, PasswordAuthentication in /etc/ssh/sshd_config in commands? As well, remove a # in front of the "key" I wish to value. These don't all have to be in one command. I setup quite a few servers, and remembering where everything is gets exhausting, so I want to get a series of commands I can copy paste and it does the work for me for future reference. Sample values: PermitRootLogin no ChallengeResponseAuthentication no PasswordAuthentication no UsePAM no UseDNS no

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  • How to use HTML markup tags inside Bash script

    - by CONtext
    I have crontab and a simple bash script that sends me emails every often containing PHP, NGINX, MYSQL errors from their log files. This is a simplified example. #/home/user/status.sh [email protected] PHP_ERROR=`tail -5 /var/log/php-fpm/error.log` NGINX_ERROR=`tail -5 /var/log/nginx/error.log` MYSQL_ERROR=`tail /var/log/mysqld.log` DISK_SPACE=`df -h` echo " Today's, server report:: ================================== DISK_SPACE: $DISK_SPACE --------------------------------- MEMORY_USAGE: $MEMORY_USAGE ----------------------------------- NGINX ERROR: $NGINX_ERROR ----------------------------------- PHP ERRORS: $PHP_ERROR ------------------------------------ MYSQL_ERRORS: $MYSQL_ERROR ------------------------------------- " | mail -s "Server reports" $EMAIL I know this is a very basic usage, but as you can see, I am trying to separate the errors, but not of the html tags including \n are working. So, my question is, is it possible to use HTML tags to format the text, if not .. then what are the alternatives.

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  • Turn off email notification from abrt (Automatic Bug Reporting Tool)

    - by Banjer
    I'm configuring CentOS 6.2 and have seen a few "[abrt] full crash report" emails. I understand that abrt is useful for creating crash dumps and what not, so I don't want to disable the service, I just would like to stop getting the crash report emails. I probably have to add something to the config file in /etc/abrt/abrt.conf. I can't seem to find anything in my searches. Any idea? Thanks. Edit: Here is my abrt.conf, which is rather simple. [root@myhost~]# cat /etc/abrt/abrt.conf # Enable this if you want abrtd to auto-unpack crashdump tarballs which appear # in this directory (for example, uploaded via ftp, scp etc). # Note: you must ensure that whatever directory you specify here exists # and is writable for abrtd. abrtd will not create it automatically. # #WatchCrashdumpArchiveDir = /var/spool/abrt-upload # Max size for crash storage [MiB] or 0 for unlimited # MaxCrashReportsSize = 1000 # Specify where you want to store coredumps and all files which are needed for # reporting. (default:/var/spool/abrt) # #DumpLocation = /var/spool/abrt And a listing of /etc/abrt: [root@myhost~]# ls -la /etc/abrt total 32 drwxr-xr-x. 3 root root 4096 Apr 13 06:14 . drwxr-xr-x. 97 root root 12288 Apr 13 03:50 .. -rw-r--r--. 1 root root 527 Dec 13 22:50 abrt-action-save-package-data.conf -rw-r--r--. 1 root root 572 Dec 13 22:50 abrt.conf -rw-r--r--. 1 root root 175 Dec 13 22:50 gpg_keys drwxr-xr-x. 2 root root 4096 Apr 13 06:13 plugins [root@myhost~]# ls -la /etc/abrt/plugins/ total 12 drwxr-xr-x. 2 root root 4096 Apr 13 06:13 . drwxr-xr-x. 3 root root 4096 Apr 13 06:14 .. -rw-r--r--. 1 root root 278 Dec 13 22:50 CCpp.conf Actually all of those conf files above are only a few lines and do not mention anything about mail, email, or notifications.

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  • nginx - 403 Forbidden

    - by michell90
    I've trouble to get aliases working correctly on nginx. When i try to access the aliases, /pma and /mba (see secure.example.com.conf), i get a 403 Forbidden but the base url works correctly. I read a lot of posts but nothing helped, so here i am. Nginx and php-fpm are running as www-data:www-data and the permissions for the directories are set to: drwxrwsr-x+ 5 www-data www-data 4.0K Dec 5 22:48 ./ drwxr-xr-x. 3 root root 4.0K Dec 4 22:50 ../ drwxrwsr-x+ 2 www-data www-data 4.0K Dec 5 13:10 mda.example.com/ drwxrwsr-x+ 11 www-data www-data 4.0K Dec 5 10:34 pma.example.com/ drwxrwsr-x+ 3 www-data www-data 4.0K Dec 5 11:49 www.example.com/ lrwxrwxrwx. 1 www-data www-data 18 Dec 5 09:56 secure.example.com -> www.example.com/ Im sorry for the bulk, but i thought better too much than too little. Here are the configuration files: /etc/nginx/nginx.conf user www-data www-data; worker_processes 1; error_log /var/log/nginx/error.log; #error_log /var/log/nginx/error.log notice; #error_log /var/log/nginx/error.log info; pid /var/run/nginx.pid; events { worker_connections 1024; } http { include /etc/nginx/mime.types; default_type application/octet-stream; log_format main '$remote_addr - $remote_user [$time_local] "$request" ' '$status $body_bytes_sent "$http_referer" ' '"$http_user_agent" "$http_x_forwarded_for"'; access_log /var/log/nginx/access.log main; sendfile on; keepalive_timeout 65; include /etc/nginx/sites-enabled/*; } /etc/nginx/sites-enabled/secure.example.com server { listen 80; server_name secure.example.com; return 301 https://$host$request_uri; } server { listen 443; server_name secure.example.com; access_log /var/log/nginx/secure.example.com.access.log; error_log /var/log/nginx/secure.example.com.error.log; root /srv/http/secure.example.com; include /etc/nginx/ssl/secure.example.com.conf; include /etc/nginx/conf.d/index.conf; include /etc/nginx/conf.d/php-ssl.conf; autoindex off; location /pma/ { alias /srv/http/pma.example.com; } location /mda/ { alias /srv/http/mda.example.com; } } /etc/nginx/ssl/secure.example.com.conf ssl on; ssl_certificate /etc/nginx/ssl/secure.example.com.crt; ssl_certificate_key /etc/nginx/ssl/secure.example.com.key; ssl_protocols SSLv3 TLSv1 TLSv1.1 TLSv1.2; ssl_ciphers HIGH:!aNULL:!MD5; /etc/nginx/conf.d/index.conf index index.php index.html index.htm; /etc/nginx/conf.d/php-ssl.conf location ~ \.php$ { try_files $uri =404; fastcgi_pass unix:/var/run/php-fpm/php-fpm.sock; fastcgi_index index.php; fastcgi_param HTTPS on; fastcgi_param SCRIPT_FILENAME $request_filename; include fastcgi_params; } /var/log/nginx/secure.example.com.error.log 2013/12/05 22:49:04 [error] 29291#0: *2 directory index of "/srv/http/pma.example.com" is forbidden, client: 176.199.78.88, server: secure.example.com, request: "GET /pma/ HTTP/1.1", host: "secure.example.com" EDIT: forgot to mention, i'm running CentOS 6.4 x86_64 and nginx 1.0.15 Thanks in advance!

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  • How do I restart MySQL in monit when page contains specific text?

    - by Tyler
    How do I check if a web page contains the text "Error connecting to database" and if the text exists in the page restart the database? Here's what I have so far but it isn't working: check host website.com with address website.com group database start program = "/usr/bin/service mysql start" stop program = "/usr/bin/service mysql stop" if url http://website.com content == "Error connecting to database" then restart

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