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  • Calling javascript function on the Mousehoever and mouseout using jQuery

    - by Wazdesign
    I want to call the javascript function using mousehover jQuery event. Here is the one function. // On mouse hover function function ShowHighlighter(d, highlight_elid) { //alert ("ShowHighlighter\n"+d); if (d == "addHighlight") { var txt = getSelText(); if (txt.length < 1) { return; } ShowContent(d); } else if (d == "deleteHighlight") { var elid = "#"+d; jQuery(elid).stop(); ShowContent(d); delete_highlight_id = "#"+highlight_elid; } } // on Mouse out function function HideContent(d) { if(d.length < 1) { return; } document.getElementById(d).style.display = "none"; } I am trying to use this function ... but it not seems to be working. jQuery('a[href="HIGHLIGHT_CREATELINK"]').mouseover(ShowHighlighter("deleteHighlight","highlight"+ randomCount + ");) ; jQuery('a[href="HIGHLIGHT_CREATELINK"]').mouseout('javascript:HideContentFade(\"deleteHighlight\");') please help me out in this. thanks.

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  • text-area-text-to-be-split-with-conditions repeated

    - by desmiserables
    I have a text area wherein i have limited the user from entering more that 15 characters in one line as I want to get the free flow text separated into substrings of max limit 15 characters and assign each line an order number. This is what I was doing in my java class: int interval = 15; items = new ArrayList(); TextItem item = null; for (int i = 0; i < text.length(); i = i + interval) { item = new TextItem (); item.setOrder(i); if (i + interval < text.length()) { item.setSubText(text.substring(i, i + interval)); items.add(item); } else { item.setSubText(text.substring(i)); items.add(item); } } Now it works properly unless the user presses the enter key. Whenever the user presses the enter key I want to make that line as a new item having only that part as the subText. I can check whether my text.substring(i, i + interval) contains any "\n" and split till there but the problem is to get the remaining characters after "\n" till next 15 or till next "\n" and set proper order and subText.

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  • Help with SOAP request using PHP

    - by mptre
    I'm having a SOAP related problem in PHP. I'm trying to create arbitrary SOAP request using Nusoap_client class. The complete request including headers should look like the example below. Ofcourse the placeholders (string) should be replaced with actual values. POST /services/RecipeCouponAPI11.asmx HTTP/1.1 Host: example.com Content-Type: text/xml; charset=utf-8 Content-Length: length SOAPAction: "http://www.example.com/services/GetCouponAll" <?xml version="1.0" encoding="utf-8"?> <soap:Envelope xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:soap="http://schemas.xmlsoap.org/soap/envelope/"> <soap:Header> <RCAuthenticator xmlns="http://www.example.com/services/"> <UserName>string</UserName> <Password>string</Password> </RCAuthenticator> </soap:Header> <soap:Body> <GetCouponAll xmlns="http://www.example.com/services/"> <campaignCode>string</campaignCode> </GetCouponAll> </soap:Body> </soap:Envelope> I tried the following code with no luck. Seems like the request isn't formated correctly. Any ideas on how to get his working? <?php $client = new Nusoap_client('http://www.example.com/services/RecipeCouponAPI11.asmx'); $headers = new SoapHeader( 'http://www.example.com/services/', 'RCAuthenticator', (object)array( 'UserName' => 'username', 'Password' => 'password' ), false ); $client->setHeaders(array($headers)); $response = $client->call( 'GetCouponAll', array('campaignCode' => 'campaigncode'), null, 'http://www.example.com/services/GetCouponAll' ); ?> Thanks in advantage!

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  • 1D Function into 2D Function Interpolation

    - by Drazick
    Hello. I have a 1D function which I want to interpolate into 2D function. I know the function should have "Polar Symmetry". Hence I use the following code (Matlab Syntax): Assuming the 1D function is LSF of the length 15. [x, y] = meshgrid([-7:7]); r = sqrt(x.^2 + y.^2); PSF = interp1([-7:7], LSF, r(:)); % Sometimes using 'spline' option, same results. PSF = reshape(PSF, [7, 7]); I have few problems: 1. Got some overshoot at the edges (As there some Extrapolation). 2. Can't enforce some assumptions (Monotonic, Non Negative). Is there a better Interpolation method for those circumstances? I couldn't find "Lanczos" based interpolation I can use the same way as interp1 (For a certain vector of points, in "imresize" you can only set the length). Is there such function anywhere? Has anyone encountered a function which allows enforcing some assumptions (Monotonically Decreasing, Non Negative, etc..). Thanks.

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  • iPhone POST to PHP failing

    - by Alexander
    I have this code here: NSString *post = [NSString stringWithFormat:@"deviceIdentifier=%@&deviceToken=%@",deviceIdentifier,deviceToken]; NSData *postData = [post dataUsingEncoding:NSASCIIStringEncoding allowLossyConversion:NO]; NSString *postLength = [NSString stringWithFormat:@"%d", [postData length]]; NSMutableURLRequest *request = [[[NSMutableURLRequest alloc] init] autorelease]; [request setURL:[NSURL URLWithString:@"http://website.com/RegisterScript.php"]]; [request setHTTPMethod:@"POST"]; [request setValue:postLength forHTTPHeaderField:@"Content-Length"]; [request setValue:@"application/x-www-form-urlencoded" forHTTPHeaderField:@"Content-Type"]; [request setValue:@"MyApp-V1.0" forHTTPHeaderField:@"User-Agent"]; [request setHTTPBody:postData]; NSData *urlData = [NSURLConnection sendSynchronousRequest:request returningResponse:nil error:nil]; NSString *response = [[NSString alloc] initWithData:urlData encoding:NSASCIIStringEncoding]; which should be sending data to my PHP server to register the device into our database, but for some of my users no POST data is being sent. I've been told that this line: NSData *postData = [post dataUsingEncoding:NSASCIIStringEncoding allowLossyConversion:NO]; may be causing the problem. Any thoughts on why this script would sometimes not send the POST data? On the server I got the packet trace for a failed send and the Content-lenght came up as 0 so no data was sent at all. Thanks for any help

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  • nHibernate Self Join Mapping

    - by kmoo01
    Hi Guys, This is probably incredibly simple, but I just cant see the wood for the trees at the moment. For brevity, I would like to model a word object, that has related words to it (synonyms), In doing so I could have the following mappings: <class name="Word" table="bs_word"> <id name="Id" column="WordId" type="Int32" unsaved-value="-1"> <generator class="native"> <param name="sequence"></param> </generator> </id> <property name="Key" column="word" type="String" length="50" /> <many-to-one name="SynonymGroup" class="BS.Core.Domain.Synonym, BS.Core" column="SynonymId" lazy="false"/> <class name="Synonym" table="bs_Synonym"> <id name="Id" column="SynonymId" type="Int32" unsaved-value="-1"> <generator class="native"> <param name="sequence"></param> </generator> </id> <property name="Alias" column="Alias" type="String" length="50" /> <bag name="Words" cascade="none" lazy="false" inverse="true"> <key column="SynonymId" /> <one-to-many class="Word" /> </bag> Mapping it like this would mean for a given word, I can access related words (synonyms) like this: word.SynonymGroup.Words However I would like to know if it is possible to map a bag of objects on an instance of a word object...if that makes sense, so I can access the related words like this: word.Words I've tried playing around with the map element, and composite elements, all to no avail - so I was wondering if some kind person could point me in the right direction? ta, kmoo01

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  • Issue intercepting property in Silverlight application

    - by joblot
    I am using Ninject as DI container in a Silverlight application. Now I am extending the application to support interception and started integrating DynamicProxy2 extension for Ninject. I am trying to intercept call to properties on a ViewModel and ending up getting following exception: “Attempt to access the method failed: System.Reflection.Emit.DynamicMethod..ctor(System.String, System.Type, System.Type[], System.Reflection.Module, Boolean)” This exception is thrown when invocation.Proceed() method is called. I tried two implementations of the interceptor and they both fail public class NotifyPropertyChangedInterceptor: SimpleInterceptor { protected override void AfterInvoke(IInvocation invocation) { var model = (IAutoNotifyPropertyChanged)invocation.Request.Proxy; model.OnPropertyChanged(invocation.Request.Method.Name.Substring("set_".Length)); } } public class NotifyPropertyChangedInterceptor: IInterceptor { public void Intercept(IInvocation invocation) { invocation.Proceed(); var model = (IAutoNotifyPropertyChanged)invocation.Request.Proxy; model.OnPropertyChanged(invocation.Request.Method.Name.Substring("set_".Length)); } } I want to call OnPropertyChanged method on the ViewModel when property value is set. I am using Attribute based interception. [AttributeUsage(AttributeTargets.Property, AllowMultiple = false, Inherited = true)] public class NotifyPropertyChangedAttribute : InterceptAttribute { public override IInterceptor CreateInterceptor(IProxyRequest request) { if(request.Method.Name.StartsWith("set_")) return request.Context.Kernel.Get<NotifyPropertyChangedInterceptor>(); return null; } } I tested the implementation with a Console Application and it works alright. I also noted in Console Application as long as I had Ninject.Extensions.Interception.DynamicProxy2.dll in same folder as Ninject.dll I did not have to explicitly load DynamicProxy2Module into the Kernel, where as I had to explicitly load it for Silverlight application as follows: IKernel kernel = new StandardKernel(new DIModules(), new DynamicProxy2Module()); Could someone please help? Thanks

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  • Raycasting with tags problems in unity3d

    - by user1855858
    i need some help here. i have a part of code to search unblocked neighbour with raycast. i need to get raycast that just collide with "WP" tag. both of the iteration shown a right results, so do the dump and the raycast, the raycast does success to collide something, but when i check what the raycast collided with, there is no result shown.... anyone knows whats wrong with this code..?? int flag = 0, flahNeigh = 0; for(flag = 0; flag< wayPoints.WPList.Length; flag++) // iteration to seek neighbour nodes { for (flagNeigh = 0; flagNeigh < wayPoints.WPList.Length; flagNeigh++) { if (wayPoints.WPList[flag].loc != wayPoints.WPList[flagNeigh].loc) // dump its own node location { if (Physics.Raycast(wayPoints.WPList[flag].loc.position, wayPoints.WPList[flagNeigh].loc.position, out hitted)) // raycasting to each node else its self { if (hitted.collider.gameObject.CompareTag("WP")) // check if the ray only collide the node { print(flag + " : " + flagNeigh + " : " + wayPoints.WPList[flagNeigh].loc.position); // debugging to see whether the code works or not (the error comes) } } } } } thanks for the appreciation and answers... sorry if i have a bad english...^^

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  • How to create resource manager in ASP.NET

    - by Bart
    Hello, I would like to create resource manager on my page and use some data stored in my resource files. (default.aspx.resx and default.aspx.en.resx) The code looks like this: System.Resources.ResourceManager myResourceManager = System.Resources.ResourceManager.CreateFileBasedResourceManager("resource", Server.MapPath("App_LocalResources") + Path.DirectorySeparatorChar, null); if (User.Identity.IsAuthenticated) { Welcome.Text = myResourceManager.GetString("LoggedInWelcomeText"); } else { Welcome.Text = myResourceManager.GetString("LoggedOutWelcomeText"); } but when i compile and run it on my local server i get this type of error: Could not find any resources appropriate for the specified culture (or the neutral culture) on disk. baseName: resource locationInfo: fileName: resource.resources Description: An unhandled exception occurred during the execution of the current web request. Please review the stack trace for more information about the error and where it originated in the code. Exception Details: System.Resources.MissingManifestResourceException: Could not find any resources appropriate for the specified culture (or the neutral culture) on disk. baseName: resource locationInfo: fileName: resource.resources Source Error: Line 89: else Line 90: { Line 91: Welcome.Text = myResourceManager.GetString("LoggedOutWelcomeText"); Line 92: } Line 93: can you please assist me with this issue?

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  • Modify jQuery Highlight? Javascript Regex

    - by Matrym
    How can I modify jquery highlight such that it doesn't find matches that appear directly before or after an alpha character? In other words, how do I prevent a match mid-word? /* highlight v3 Highlights arbitrary terms. <http://johannburkard.de/blog/programming/javascript/highlight-javascript-text-higlighting-jquery-plugin.html> MIT license. Johann Burkard <http://johannburkard.de> <mailto:[email protected]> */ jQuery.fn.highlight = function(pat) { function innerHighlight(node, pat) { var skip = 0; if (node.nodeType == 3) { var pos = node.data.toUpperCase().indexOf(pat); if (pos >= 0) { var spannode = document.createElement('span'); spannode.className = 'highlight'; var middlebit = node.splitText(pos); var endbit = middlebit.splitText(pat.length); var middleclone = middlebit.cloneNode(true); spannode.appendChild(middleclone); middlebit.parentNode.replaceChild(spannode, middlebit); skip = 1; } } else if (node.nodeType == 1 && node.childNodes && !/(script|style)/i.test(node.tagName)) { for (var i = 0; i < node.childNodes.length; ++i) { i += innerHighlight(node.childNodes[i], pat); } } return skip; } return this.each(function() { innerHighlight(this, pat.toUpperCase()); }); }; jQuery.fn.removeHighlight = function() { return this.find("span.highlight").each(function() { this.parentNode.firstChild.nodeName; with (this.parentNode) { replaceChild(this.firstChild, this); normalize(); } }).end(); };

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  • review of a codility test - pair_sum_even_count

    - by geoaxis
    I recently took an online test on codility as part of a recruitment process. I was given two simple problems to solve in 1 hour. For those who don't know codility, its an online coding test site where you can solve ACM style problems in many different languages. if you have 30 or so mins then check this http://codility.com/demo/run/ My weapon of choice is usually Java. So on of the problems I have is as follows (I will try to remember, should have taken a screenshot) Lets say you have array A[0]=1 A[1]=-1 ....A[n]=x Then what would be the smartest way to find out the number of times when A[i]+A[j] is even where i < j So if we have {1,2,3,4,5} we have 1+3 1+5 2+4 3+5 = 4 pairs which are even The code I wrote was some thing along the lines int sum=0; for(int i=0;i<A.length-1;i++){ for (int j=i+1;j<A.length;j++){ if( ((A[i]+A[j])%2) == 0 && i<j) { sum++; } } } There was one more restriction that if the number of pairs is greater than 1e9 then it should retrun -1, but lets forget it. Can you suggest a better solution for this. The number of elements won't exceed 1e9 in normal cases. I think I got 27 points deducted for the above code (ie it's not perfect). Codility gives out a detailed assessment of what went wrong, I don't have that right now.

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  • FlashBuilder 4 and Zend Framework error

    - by sig
    I am trying to use adobe flash builder 4 with a php service. I had it set up an older macbook running leopard, but just tried to set it up on my new laptop running snow leopard. I did all the same steps.. set the Flex Server to be PHP, set the web root and url. Then I go to Data-Connect To PHP and point it to a php file I have in my web root. It says it needs to install Zend, and claims it does so successfully, but then when I try to continue, I get an error. I don't understand.. this same setup works on my older laptop. (Yes, I checked the amf.production was false) Unable to retrieve operations and entities from the file Make sure that Zend Framework is installed correctly and the parameter "amf.production" is not set to true in the amf_config.ini file located in the project output folder. false), true);$default_config-merge(new Zend_Config_Ini($configfile, 'zendamf'));$default_config-setReadOnly();$amf = $default_config-amf;// Store configuration in the registryZend_Registry::set("amf-config", $amf);// Initialize AMF Server$server = new Zend_Amf_Server();$server-setProduction($amf-production);if(isset($amf-directories)) { $dirs = $amf-directories-toArray(); foreach($dirs as $dir) { // get the first character of the path. // If it does not start with slash then it implies that the path is relative to webroot. Else it will be treated as absolute path $length = strlen($dir); $firstChar = $dir; if($length = 1) $firstChar = $dir[0]; if($firstChar != "/"){ // if the directory is ./ path then we add the webroot only. if($dir == "./"){ $server-addDirectory($webroot); }else{ $tempPath = $webroot . "/" . $dir; $server-addDirectory($tempPath); } }else{ $server-addDirectory($dir); } }}// Initialize introspector for non-productionif(!$amf-production) { $server-setClass('Zend_Amf_Adobe_Introspector', '', array("config" = $default_config, "server" = $server)); $server-setClass('Zend_Amf_Adobe_DbInspector', '', array("config" = $default_config, "server" = $server));}// Handle requestecho $server-handle();

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  • Using MD5 to generate an encryption key from password?

    - by Charles
    I'm writing a simple program for file encryption. Mostly as an academic exercise but possibly for future serious use. All of the heavy lifting is done with third-party libraries, but putting the pieces together in a secure manner is still quite a challenge for the non-cryptographer. Basically, I've got just about everything working the way I think it should. I'm using 128-bit AES for the encryption with a 128-bit key length. I want users to be able to enter in variable-length passwords, so I decided to hash the password with MD5 and then use the hash as the key. I figured this was acceptable--the key is always supposed to be a secret, so there's no reason to worry about collision attacks. Now that I've implemented this, I ran across a couple articles indicating that this is a bad idea. My question is: why? If a good password is chosen, the cipher is supposed to be strong enough on its own to never reveal the key except via an extraordinary (read: currently infeasible) brute-force effort, right? Should I be using something like PBKDF2 to generate the key or is that just overkill for all but the most extreme cryptographic applications?

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  • Run time error: what's wrong?

    - by javacode
    I am getting run time error import javax.mail.*; import javax.mail.internet.*; import java.util.*; public class SendMail { public static void main(String [] args)throws MessagingException { SendMail sm=new SendMail(); sm.postMail(new String[]{"[email protected]"},"hi","hello","[email protected]"); } public void postMail( String recipients[ ], String subject, String message , String from) throws MessagingException { boolean debug = false; //Set the host smtp address Properties props = new Properties(); props.put("mail.smtp.host", "webmail.emailmyname.com"); // create some properties and get the default Session Session session = Session.getDefaultInstance(props, null); session.setDebug(debug); // create a message Message msg = new MimeMessage(session); // set the from and to address InternetAddress addressFrom = new InternetAddress(from); msg.setFrom(addressFrom); InternetAddress[] addressTo = new InternetAddress[recipients.length]; for (int i = 0; i < recipients.length; i++) { addressTo[i] = new InternetAddress(recipients[i]); } msg.setRecipients(Message.RecipientType.TO, addressTo); // Optional : You can also set your custom headers in the Email if you Want msg.addHeader("MyHeaderName", "myHeaderValue"); // Setting the Subject and Content Type msg.setSubject(subject); msg.setContent(message, "text/plain"); Transport.send(msg); } } Error Exception in thread "main" java.lang.NoClassDefFoundError: SendMail Caused by: java.lang.ClassNotFoundException: SendMail at java.net.URLClassLoader$1.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(Unknown Source) at java.lang.ClassLoader.loadClass(Unknown Source) at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source) at java.lang.ClassLoader.loadClass(Unknown Source) Could not find the main class: SendMail. Program will exit.

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  • Updating permissions on Amazon S3 files that were uploaded via JungleDisk

    - by Simon_Weaver
    I am starting to use Jungle Disk to upload files to an Amazon S3 bucket which corresponds to a Cloudfront distribution. i.e. I can access it via an http:// URL and I am using Amazon as a CDN. The problem I am facing is that Jungle Disk doesn't set 'read' permissions on the files so when I go to the corresponding URL in a browser I get an Amazon 'AccessDenied' error. If I use a tool like BucketExplorer to set the ACL then that URL now returns a 200. I really really like the simplicity of dragging files to a network drive. JungleDisk is the best program I've found to do this reliably without tripping over itself and getting confused. However it doesn't seem to have an option to make the files read-able. I really don't want to have to go to a different tool (especially if i have to buy it) to just change the permissions - and this seems really slow anyway because they generally seem to traverse the whole directory structure. JungleDisk provides some kind of 'web access' - but this is a paid feature and I'm not sure if it will work or not. S3 doesn't appear to propagate permissions down which is a real pain. I'm considering writing a manual tool to traverse my tree and set everything to 'read' but I'd rather not do this if this is a problem someone else has already solved.

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  • How do I find the most “Naturally" direct route using A-star (A*)

    - by Greg B
    I have implemented the A* algorithm in AS3 and it works great except for one thing. Often the resulting path does not take the most “natural” or smooth route to the target. In my environment the object can move diagonally as inexpensively as it can move horizontally or vertically. Here is a very simple example; the start point is marked by the S, and the end (or finish) point by the F. | | | | | | | | | | |S| | | | | | | | | x| | | | | | | | | | x| | | | | | | | | | x| | | | | | | | | | x| | | | | | | | | | x| | | | | | | | | | |F| | | | | | | | | | | | | | | | | | | | | | | | | | | | | As you can see, during the 1st round of finding, nodes [0,2], [1,2], [2,2] will all be added to the list of possible node as they all have a score of N. The issue I’m having comes at the next point when I’m trying to decide which node to proceed with. In the example above I am using possibleNodes[0] to choose the next node. If I change this to possibleNodes[possibleNodes.length-1] I get the following path. | | | | | | | | | | |S| | | | | | | | | | |x| | | | | | | | | | |x| | | | | | | | | | |x| | | | | | | | |x| | | | | | | | |x| | | | | | | | |F| | | | | | | | | | | | | | | | | | | | | | | | | | | | | And then with possibleNextNodes[Math.round(possibleNextNodes.length / 2)-1] | | | | | | | | | | |S| | | | | | | | | |x| | | | | | | | | x| | | | | | | | | | x| | | | | | | | | | x| | | | | | | | | | x| | | | | | | | | | |F| | | | | | | | | | | | | | | | | | | | | | | | | | | | | All these paths have the same cost as they all contain the same number of steps but, in this situation, the most sensible path would be as follows... | | | | | | | | | | |S| | | | | | | | | |x| | | | | | | | | |x| | | | | | | | | |x| | | | | | | | | |x| | | | | | | | | |x| | | | | | | | | |F| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Is there a formally accepted method of making the path appear more sensible rather than just mathematically correct?

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  • Improving method to read signed 8-bit integers from hexadecimal.

    - by JYelton
    Scenario: I have a string of hexadecimal characters which encode 8-bit signed integers. Each two characters represent a byte which employ the leftmost (MSB) bit as the sign (rather than two's complement). I am converting these to signed ints within a loop and wondered if there's a better way to do it. There are too many conversions and I am sure there's a more efficient method that I am missing. Current Code: string strData = "FFC000407F"; // example input data, encodes: -127, -64, 0, 64, 127 int v; for (int x = 0; x < strData.Length/2; x++) { v = HexToInt(strData.Substring(x * 2, 2)); Console.WriteLine(v); // do stuff with v } private int HexToInt(string _hexData) { string strBinary = Convert.ToString(Convert.ToInt32(_hexData, 16), 2).PadLeft(_hexData.Length * 4, '0'); int i = Convert.ToInt32(strBinary.Substring(1, 7), 2); i = (strBinary.Substring(0, 1) == "0" ? i : -i); return i; } Question: Is there a more streamlined and direct approach to reading two hex characters and converting them to an int when they represent a signed int (-127 to 127) using the leftmost bit as the sign?

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  • [C#] Improving method to read signed 8-bit integers from hexadecimal.

    - by JYelton
    Scenario: I have a string of hexadecimal characters which encode 8-bit signed integers. Each two characters represent a byte which employ the leftmost (MSB) bit as the sign (rather than two's complement). I am converting these to signed ints within a loop and wondered if there's a better way to do it. There are too many conversions and I am sure there's a more efficient method that I am missing. Current Code: string strData = "FFC000407F"; // example input data, encodes: -127, -64, 0, 64, 127 int v; for (int x = 0; x < strData.Length/2; x++) { v = HexToInt(strData.Substring(x * 2, 2)); Console.WriteLine(v); // do stuff with v } private int HexToInt(string _hexData) { string strBinary = Convert.ToString(Convert.ToInt32(_hexData, 16), 2).PadLeft(_hexData.Length * 4, '0'); int i = Convert.ToInt32(strBinary.Substring(1, 7), 2); i = (strBinary.Substring(0, 1) == "0" ? i : -i); return i; } Question: Is there a more streamlined and direct approach to reading two hex characters and converting them to an int when they represent a signed int (-127 to 127) using the leftmost bit as the sign?

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  • R + Bioconductor : combining probesets in an ExpressionSet

    - by Mike Dewar
    Hi, First off, this may be the wrong Forum for this question, as it's pretty darn R+Bioconductor specific. Here's what I have: library('GEOquery') GDS = getGEO('GDS785') cd4T = GDS2eSet(GDS) cd4T <- cd4T[!fData(cd4T)$symbol == "",] Now cd4T is an ExpressionSet object which wraps a big matrix with 19794 rows (probesets) and 15 columns (samples). The final line gets rid of all probesets that do not have corresponding gene symbols. Now the trouble is that most genes in this set are assigned to more than one probeset. You can see this by doing gene_symbols = factor(fData(cd4T)$Gene.symbol) length(gene_symbols)-length(levels(gene_symbols)) [1] 6897 So only 6897 of my 19794 probesets have unique probeset - gene mappings. I'd like to somehow combine the expression levels of each probeset associated with each gene. I don't care much about the actual probe id for each probe. I'd like very much to end up with an ExpressionSet containing the merged information as all of my downstream analysis is designed to work with this class. I think I can write some code that will do this by hand, and make a new expression set from scratch. However, I'm assuming this can't be a new problem and that code exists to do it, using a statistically sound method to combine the gene expression levels. I'm guessing there's a proper name for this also but my googles aren't showing up much of use. Can anyone help?

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  • Keeping track of leading zeros with BitSet in Java

    - by Ryan
    So, according to this question there are two ways to look at the size of a BitSet. size(), which is legacy and not really useful. I agree with this. The size is 64 after doing: BitSet b = new BitSet(8); length(), which returns the index of the highest set bit. In the above example, length() will return 0. This is somewhat useful, but doesn't accurately reflect the number of bits the BitSet is supposed to be representing in the event you have leading zeros. The information I'm dealing with rarely(if ever) falls evenly into 8-bit bytes, and the leading 0s are just as important to me as the 1s. I have some data fields that are 333 bits long, some that are 20, etc. Is there a better way to deal with bit-level details in Java that will keep track of leading zeros? Otherwise, I'm going to have to 'roll my own', so to speak. To which I have a few ideas already, but I'd prefer not to reinvent the wheel if possible.

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  • How to invalidate cache when benchmarking?

    - by Michael Buen
    I have this code, that when swapping the order of UsingAs and UsingCast, their performance also swaps. using System; using System.Diagnostics; using System.Linq; using System.IO; class Test { const int Size = 30000000; static void Main() { object[] values = new MemoryStream[Size]; UsingAs(values); UsingCast(values); Console.ReadLine(); } static void UsingCast(object[] values) { Stopwatch sw = Stopwatch.StartNew(); int sum = 0; foreach (object o in values) { if (o is MemoryStream) { var m = (MemoryStream)o; sum += (int)m.Length; } } sw.Stop(); Console.WriteLine("Cast: {0} : {1}", sum, (long)sw.ElapsedMilliseconds); } static void UsingAs(object[] values) { Stopwatch sw = Stopwatch.StartNew(); int sum = 0; foreach (object o in values) { if (o is MemoryStream) { var m = o as MemoryStream; sum += (int)m.Length; } } sw.Stop(); Console.WriteLine("As: {0} : {1}", sum, (long)sw.ElapsedMilliseconds); } } Outputs: As: 0 : 322 Cast: 0 : 281 When doing this... UsingCast(values); UsingAs(values); ...Results to this: Cast: 0 : 322 As: 0 : 281 When doing just this... UsingAs(values); ...Results to this: As: 0 : 322 When doing just this: UsingCast(values); ...Results to this: Cast: 0 : 322 Aside from running them independently, how to invalidate the cache so the second code being benchmarked won't receive the cached memory of first code? Benchmarking aside, just loved the fact that modern processors do this caching magic :-)

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  • xmlrpc client call in python does not come back

    - by Jack Ha
    Using Python 2.6.4, windows With the following script I want to test a certain xmlrpc server. I call a non-existent function and hope for a traceback with an error. Instead, the function does not return. What could be the cause? import xmlrpclib s = xmlrpclib.Server("http://127.0.0.1:80", verbose=True) s.functioncall() The output is: send: 'POST /RPC2 HTTP/1.0\r\nHost: 127.0.0.1:80\r\nUser-Agent: xmlrpclib.py/1.0 .1 (by www.pythonware.com)\r\nContent-Type: text/xml\r\nContent-Length: 106\r\n\ r\n' send: "<?xml version='1.0'?>\n<methodCall>\n<methodName>functioncall</methodName >\n<params>\n</params>\n</methodCall>\n" reply: 'HTTP/1.1 200 OK\r\n' header: Content-Type: text/xml header: Cache-Control: no-cache header: Content-Length: 376 header: Date: Tue, 30 Mar 2010 13:27:21 GMT body: '<?xml version="1.0"?>\r\n<methodResponse>\r\n<fault>\r\n<value>\r\n<struc t>\r\n<member>\r\n<name>faultCode</name>\r\n<value><i4>1</i4></value>\r\n</membe r>\r\n<member>\r\n<name>faultString</name>\r\n<value><string>PVSS00ctrl (2), 2 010.03.30 15:27:21.395, CTRL, SEVERE, 72, Function not defined, functioncall , , \n</string></value>\r\n</member>\r\n</struct>\r\n</value>\r\n</fault>\r\n</m ethodResponse>\r\n' (here the program hangs and does not return until I kill the server) edit: the server is written in c++, using its own xmlrpc library

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  • Auto-converting numbers to comma-fied versions

    - by Jeff Atwood
    Given the following text /feeds/tag/remote-desktop 1320 17007 22449240 /feeds/tag/terminal-server 1328 15805 20989040 /foo/23211/test 1490 11341 16898090 Let's say we want to convert those numbers to their comma-fied forms, like so /feeds/tag/remote-desktop 1,320 17,007 22,449,240 /feeds/tag/terminal-server 1,328 15,805 20,989,040 /foo/23211/test 1,490 11,341 16,898,090 (don't worry about fixing the fixed-width ASCII spacing, that's a problem for another day) This is the best regex I could come up with; it's based on this JavaScript regex solution from Regex Ninja Steven Levithan: return Regex.Replace(s, @"\b(?<!\/)\d{4,}\b(?<!\/)", delegate(Match match) { string output = ""; string m = match.Value; int len = match.Length; for (int i = len - 1; i >= 0 ; i--) { output = m[i] + output; if ((len - i) % 3 == 0) output = "," + output; } if (output.StartsWith(",")) output = output.Substring(1, output.Length-1); return output; }); In a related question, there is a very clever number comma insertion regex proposed: text = Regex.Replace(text, @"(?<=\d)(?=(\d{3})+$)", ",") However this requires an end anchor $ which, as you can see, I don't have in the above text -- the numbers are "floating" in the rest of the text. I suspect there is a cleaner way to do this than my solution? After writing this, I just realized I could combine them, and put one Regex inside the other, like so: return Regex.Replace(s, @"\b(?<!\/)\d{4,}\b(?<!\/)", delegate(Match match) { return Regex.Replace(match.Value, @"(?<=\d)(?=(\d{3})+$)", ","); });

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  • Decoding tcp packets using python

    - by mikip
    Hello I am trying to decode data received over a tcp connection. The packets are small, no more than 100 bytes. However when there is a lot of them I receive some of the the packets joined together. Is there a way to prevent this. I am using python I have tried to separate the packets, my source is below. The packets start with STX byte and end with ETX bytes, the byte following the STX is the packet length, (packet lengths less than 5 are invalid) the checksum is the last bytes before the ETX def decode(data): while True: start = data.find(STX) if start == -1: #no stx in message pkt = '' data = '' break #stx found , next byte is the length pktlen = ord(data[1]) #check message ends in ETX (pktken -1) or checksum invalid if pktlen < 5 or data[pktlen-1] != ETX or checksum_valid(data[start:pktlen]) == False: print "Invalid Pkt" data = data[start+1:] continue else: pkt = data[start:pktlen] data = data[pktlen:] break return data , pkt I use it like this #process reports try: data = sock.recv(256) except: continue else: while data: data, pkt = decode(data) if pkt: process(pkt) Also if there are multiple packets in the data stream, is it best to return the packets as a collection of lists or just return the first packet I am not that familiar with python, only C, is this method OK. Any advice would be most appreciated. Thanks in advance Thanks

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  • Making HTTP POST request

    - by infrared
    I'm trying to make a POST request to retrieve information about a book. Here is the code that returns HTTP code: 302, Moved import httplib, urllib params = urllib.urlencode({ 'isbn' : '9780131185838', 'catalogId' : '10001', 'schoolStoreId' : '15828', 'search' : 'Search' }) headers = {"Content-type": "application/x-www-form-urlencoded", "Accept": "text/plain"} conn = httplib.HTTPConnection("bkstr.com:80") conn.request("POST", "/webapp/wcs/stores/servlet/BuybackSearch", params, headers) response = conn.getresponse() print response.status, response.reason data = response.read() conn.close() When I try from a browser, from this page: http://www.bkstr.com/webapp/wcs/stores/servlet/BuybackMaterialsView?langId=-1&catalogId=10001&storeId=10051&schoolStoreId=15828 , it works. What am I missing in my code? Thanks EDIT: Here's what I get when I call print response.msg 302 Moved Date: Tue, 07 Sep 2010 16:54:29 GMT Vary: Host,Accept-Encoding,User-Agent Location: http://www.bkstr.com/webapp/wcs/stores/servlet/BuybackSearch X-UA-Compatible: IE=EmulateIE7 Content-Length: 0 Content-Type: text/plain; charset=utf-8 Seems that the location points to the same url I'm trying to access in the first place? EDIT2: I've tried using urllib2 as suggested here. Here is the code: import urllib, urllib2 url = 'http://www.bkstr.com/webapp/wcs/stores/servlet/BuybackSearch' values = {'isbn' : '9780131185838', 'catalogId' : '10001', 'schoolStoreId' : '15828', 'search' : 'Search' } data = urllib.urlencode(values) req = urllib2.Request(url, data) response = urllib2.urlopen(req) print response.geturl() print response.info() the_page = response.read() print the_page And here is the output: http://www.bkstr.com/webapp/wcs/stores/servlet/BuybackSearch Date: Tue, 07 Sep 2010 16:58:35 GMT Pragma: No-cache Cache-Control: no-cache Expires: Thu, 01 Jan 1970 00:00:00 GMT Set-Cookie: JSESSIONID=0001REjqgX2axkzlR6SvIJlgJkt:1311s25dm; Path=/ Vary: Accept-Encoding,User-Agent X-UA-Compatible: IE=EmulateIE7 Content-Length: 0 Connection: close Content-Type: text/html; charset=utf-8 Content-Language: en-US Set-Cookie: TSde3575=225ec58bcb0fdddfad7332c2816f1f152224db2f71e1b0474c866f3b; Path=/

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