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  • How to fetch parameters when using the Apache Commons CLI library

    - by Mridang Agarwalla
    I'm using the Apache Commons CLI to handle command line arguments in Java. I've figured out my way around it to a decent extent but I need a little help. I've declared the a and b options and I'm able to access the value using CommandLine.getOptionValue. Usage: myapp [OPTION] [DIRECTORY] Options: -a Option A -b Option B How do I declare and access the DIRECTORY variable? Thank you.

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  • Imputing missing data in aligned sequences

    - by Kwame Oduro
    I want a simple perl script that can help me impute missing nucleotides in aligned sequences: As an example, my old_file contains the following aligned sequences: seq1 ATGTC seq2 ATGTC seq3 ATNNC seq4 NNGTN seq5 CTCTN So I now want to infer all Ns in the file and get a new file with all the Ns inferred based on the majority nucleotide at a particular position. My new_file should look like this: seq1 ATGTC seq2 ATGTC seq3 ATGTC seq4 ATGTC seq5 CTCTC A script with usage: "impute_missing_data.pl old_file new_file" or any other approach will be helpful to me. Thank you.

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  • Windows XP GUI programming language

    - by bobir
    I need to write a Windows XP/Vista application, main requirements: Just one .exe file, without extra runtime, like Air, .Net; posstibly a couple of dlls. Very small file size. The application is for network centric usage, similar to ICQ or Gtalk clients. Thanks in advance.

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  • Which CA issues Timestamping certificate

    - by frx
    Hello! Our company currently implementing TSA (Time Stamp Authority) service. And now we are searching CA (Certification Authority), which could issue certificate with intended usage: Timestamping. I contacted with few CA's, but they offer just Digital ID certificates, and know nothing about TSA. Maybe someone has experience with such problem? Thank You!

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  • [bash] files indexed by production date

    - by caas
    Each day an application creates a file called file_YYYYMMDD.csv where YYYYMMDD is the production date. But sometimes the generation fails and no files are generated for a couple of days. I'd like an easy way in a bash or sh script to find the filename of the most recent file, which has been produced before a given reference date. Typical usage: find the last generated file, disregarding those produced after the May 1st. Thanks for your help

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  • Web site backup in PHP?

    - by Pekka
    Does anybody know a clean PHP-based solution that can backup remote web sites using FTP? Must haves: Recursive FTP backups Possible to run through a cron job Easy to configure (easy adding of multiple sites) Local storage of backup files is sufficient Would be nice: Backed up sites are stored as zip files A nice interface to manage things Provides notification when backup has succeeded or failed Does incremental backups Does MySQL Database backups I need this to be PHP (or Perl) based because it's going to be used on shared hosting packages that do not allow usage of the standard GNU/Linux tools available.

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  • How to write my own global lock / unlock functions for PostgreSQL

    - by rafalmag
    I have postgresql (in perlu) function getTravelTime(integer, timestamp), which tries to select data for specified ID and timestamp. If there are no data or if data is old, it downloads them from external server (downloading time ~300ms). Multiple process use this database and this function. There is an error when two process do not find data and download them and try to do an insert to travel_time table (id and timestamp pair have to be unique). I thought about locks. Locking whole table would block all processes and allow only one to proceed. I need to lock only on id and timestamp. pg_advisory_lock seems to lock only in "current session". But my processes uses their own sessions. I tried to write my own lock/unlock functions. Am I doing it right? I use active waiting, how can I omit this? Maybe there is a way to use pg_advisory_lock() as global lock? My code: CREATE TABLE travel_time_locks ( id_key integer NOT NULL, time_key timestamp without time zone NOT NULL, UNIQUE (id_key, time_key) ); ------------ -- Function: mylock(integer, timestamp) DROP FUNCTION IF EXISTS mylock(integer, timestamp) CASCADE; -- Usage: SELECT mylock(1, '2010-03-28T19:45'); -- function tries to do a global lock similar to pg_advisory_lock(key, key) CREATE OR REPLACE FUNCTION mylock(id_input integer, time_input timestamp) RETURNS void AS $BODY$ DECLARE rows int; BEGIN LOOP BEGIN -- active waiting here !!!! :( INSERT INTO travel_time_locks (id_key, time_key) VALUES (id_input, time_input); EXCEPTION WHEN unique_violation THEN CONTINUE; END; EXIT; END LOOP; END; $BODY$ LANGUAGE 'plpgsql' VOLATILE COST 1; ------------ -- Function: myunlock(integer, timestamp) DROP FUNCTION IF EXISTS myunlock(integer, timestamp) CASCADE; -- Usage: SELECT myunlock(1, '2010-03-28T19:45'); -- function tries to do a global unlock similar to pg_advisory_unlock(key, key) CREATE OR REPLACE FUNCTION myunlock(id_input integer, time_input timestamp) RETURNS integer AS $BODY$ DECLARE BEGIN DELETE FROM ONLY travel_time_locks WHERE id_key=id_input AND time_key=time_input; RETURN 1; END; $BODY$ LANGUAGE 'plpgsql' VOLATILE COST 1;

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  • Really fast C++ html parser

    - by Alessandro
    Hello to all, I'm doing a html text feature extractor in C++; the program need to be REALLY fast: i need to extract a this features in ms per html page and the memory usage needs to be good and finally unicode encoding well be nice. I know how difficult is to have all of this things, but i want a parser close to these things at least. Somebody have a suggestion?

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  • Filtering python string through external program

    - by Peter
    What's the cleanest way of filtering a Python string through an external program? In particular, how do you write the following function? def filter_through(s, ext_cmd): # Filters string s through ext_cmd, and returns the result. # Example usage: # filter a multiline string through tac to reverse the order. filter_through("one\ntwo\nthree\n", "tac") # => returns "three\ntwo\none\n" Note: the example is only that - I realize there are much better ways of reversing lines in python.

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  • Object or primitive type

    - by John
    Hi, Can someone explain to me the usage of Integer, Boolean etc in place of their primitive types in JAVA? I can't seem to grasp the advantages their are providing. They seem to create unnecessary problems of handling null values. Thanks!

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  • javascript error listener

    - by John Doe
    hi all i try using window.attachEvent (or addEventListener) to capture js errors my callback function gets only one event parameter my question is: how do i get line number and source file of the error from this event? the alternative usage window.onerror=callback; works but an event listener has other benefits thus im giving it a try

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  • How to automatically monitor and limit resource of process on Windows

    - by Nat
    On Linux, normally I use ptrace function to trace all syscall, and kill the process if the it tries to do anything harmful to my machine, such as system("shutdown -s -t 00") or so. Is there a way for me to do this on Windows? EDIT: I want to write Sandbox program to limit time and memory usage of its child that can work on both Windows and Linux, and now it can only run on Linux via ptrace

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  • Deep clone utility recomendation

    - by Supowski
    Is there any utility for deep cloning for java collections: Arrays Lists Maps NOTE: prefer some solution without usage of serialization, but with use of Object.clone() method. I can be sure that my custom object will implement clone() method and will use only java-standard classes that are cloneable...

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  • Insert Image in richTextBoxControl

    - by Rahat
    What is the best way to insert an image programatically into the RichTextBox control in C# Winforms? If the method is using Clipboard then what is the optimized way to keep the Clipboard original data (i.e. the data state before placing my image on the Clipboard) available to be replaced after my temporary usage of Clipboard for inseting my image in Rich Text Box Control.

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  • Connect to MySQL in Ruby using NetBeans

    - by Varun
    I've downloaded the "dbd-mysql-0.4.4.zip" and linked it to my project. While I try to run a demo code from NetBeans the very first line require "dbi" gives me an error. Is there a different way to do it? I also tried jruby setup.rb config --with=dbi,dbd_mysql from the command prompt and it gave me the following error: config: unknown option --with=dbi,dbd_mysql Try 'ruby setup.rb --help' for detailed usage. Any suggestions please?

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  • Free JVM profilers for websites

    - by 2Real
    I'm looking for a JVM profiler (preferably open source) so I can look at the heap and cpu usage of my personal website. I've used Lambda Probe, and I like it because it provides a web interface for my remote Unix computer that has no display. I was wondering what else is available Thanks,

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  • ByPassing Google App Engine SDK to allow black listed classes

    - by ivanceras
    Is there a way to circumbent google app engine sdk to allow the usage of classes that are not present in the GAE JRE white list? I know the app that I would be building will not run in appspot, but at least in my development server, I need to access a postgresql database(java.net.socket.*) and generate some files(java.io.FileWriter) in my development server.

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  • RMagick Rounded Corners

    - by mikeycgto
    Need a simple a way of rounding off an Image. I need the corners to be transparent. This link shows how to do it via command line: http://www.imagemagick.org/Usage/thumbnails/#rounded What I need is the corresponding RMagick\Ruby code... Thanks!

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  • magento https error

    - by Ela
    when i made https enabled in secure url and front end secure url usage to yes in magento the checkout page becomes not found. Should i need to do anything more? where i have to place my ssl certificates. please help me in this

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