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• Scipy sparse... arrays?

  - by spitzanator

  Hey, folks. So, I'm doing some Kmeans classification using numpy arrays that are quite sparse-- lots and lots of zeroes. I figured that I'd use scipy's 'sparse' package to reduce the storage overhead, but I'm a little confused about how to create arrays, not matrices. I've gone through this tutorial on how to create sparse matrices: http://www.scipy.org/SciPy_Tutorial#head-c60163f2fd2bab79edd94be43682414f18b90df7 To mimic an array, I just create a 1xN matrix, but as you may guess, Asp.dot(Bsp) doesn't quite work because you can't multiply two 1xN matrices. I'd have to transpose each array to Nx1, and that's pretty lame, since I'd be doing it for every dot-product calculation. Next up, I tried to create an NxN matrix where column 1 == row 1 (such that you can multiply two matrices and just take the top-left corner as the dot product), but that turned out to be really inefficient. I'd love to use scipy's sparse package as a magic replacement for numpy's array(), but as yet, I'm not really sure what to do. Any advice? Thank you very much!

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• Best practise when using httplib2.Http() object

  - by tomaz

  I'm writing a pythonic web API wrapper with a class like this import httplib2 import urllib class apiWrapper: def __init__(self): self.http = httplib2.Http() def _http(self, url, method, dict): ''' Im using this wrapper arround the http object all the time inside the class ''' params = urllib.urlencode(dict) response, content = self.http.request(url,params,method) as you can see I'm using the _http() method to simplify the interaction with the httplib2.Http() object. This method is called quite often inside the class and I'm wondering what's the best way to interact with this object: create the object in the __init__ and then reuse it when the _http() method is called (as shown in the code above) or create the httplib2.Http() object inside the method for every call of the _http() method (as shown in the code sample below) import httplib2 import urllib class apiWrapper: def __init__(self): def _http(self, url, method, dict): '''Im using this wrapper arround the http object all the time inside the class''' http = httplib2.Http() params = urllib.urlencode(dict) response, content = http.request(url,params,method)

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• Underscore characters disappears

  - by pocoa

  I'm using jEdit 4.3 pre 16. As I've mentioned on the title, when I'm typing, sometimes underscore characters disappears. I tried to change fonts, line highlighting etc. but it didn't work. Is there any solution of this problem?

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• Dynamically expanding Django forms

  - by RexE

  I would like to create a form where a user can enter an arbitrary # of items in separate textboxes. The user could add (and potentially remove) fields as needed. Something like this: I found the following different solutions: http://www.eggdrop.ch/blog/2007/02/15/django-dynamicforms/ http://dewful.com/?p=100 Is there another best practice I might not be aware of?

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• Django BigInteger auto-increment field as primary key?

  - by Alex Letoosh

  Hi all, I'm currently building a project which involves a lot of collective intelligence. Every user visiting the web site gets created a unique profile and their data is later used to calculate best matches for themselves and other users. By default, Django creates an INT(11) id field to handle models primary keys. I'm concerned with this being overflown very quickly (i.e. ~2.4b devices visiting the page without prior cookie set up). How can I change it to be represented as BIGINT in MySQL and long() inside Django itself? I've found I could do the following (http://docs.djangoproject.com/en/dev/ref/models/fields/#bigintegerfield): class MyProfile(models.Model): id = BigIntegerField(primary_key=True) But is there a way to make it autoincrement, like usual id fields? Additionally, can I make it unsigned so that I get more space to fill in? Thanks!

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• File Uploads with Turbogears 2

  - by William Chambers

  I've been trying to work out the 'best practices' way to manage file uploads with Turbogears 2 and have thus far not really found any examples. I've figured out a way to actually upload the file, but I'm not sure how reliable it us. Also, what would be a good way to get the uploaded files name? file = request.POST['file'] permanent_file = open(os.path.join(asset_dirname, file.filename.lstrip(os.sep)), 'w') shutil.copyfileobj(file.file, permanent_file) file.file.close() this_file = self.request.params["file"].filename permanent_file.close() So assuming I'm understanding correctly, would something like this avoid the core 'naming' problem? id = UUID. file = request.POST['file'] permanent_file = open(os.path.join(asset_dirname, id.lstrip(os.sep)), 'w') shutil.copyfileobj(file.file, permanent_file) file.file.close() this_file = file.filename permanent_file.close()

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• Getting a RichTextCtrl's default font size in wxPython

  - by Sam

  I have a RichTextCtrl, which I've modified to accept HTML input. The HTML parsing code needs to be able to increase and decrease the font size as it gets tags like <font size="-1">, but I can't work out how to get the control's default font size to adjust. I tried the following (where self is my RichTextCtrl): fred = wx.richtext.RichTextAttr() self.GetStyle(0,fred) print fred.GetFontSize() However, the final instruction fails, because GetStyle turns fred into a TextAttrEx and so I get AttributeError: 'TextAttrEx' object has no attribute 'GetFontSize'. Am I missing a vastly easier way of getting the default font size?

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• How to deserialize an object with pyYaml using safe_load?

  - by systempuntoout

  Having a snippet like this: import yaml class User(object): def __init__(self, name, surname): self.name= name self.surname= surname user = User('spam', 'eggs') serialized_user = yaml.dump(user) #Network deserialized_user = yaml.load(serialized_user) print "name: %s, sname: %s" % (deserialized_user.name, deserialized_user.surname) Yaml docs says that it is not safe to call yaml.load with any data received from an untrusted source; so, what do i need to modify to my snippet\class to use safe_load method? Is it possible?

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• Open/Close database connection in django

  - by mp0int

  I am using Django and Postgresql as my DBMS. I wish to set a setting that enables to enable/disable database connection. When the connection is set to closed (in settings.py) the site will display a message such as "meintanence mode" or something like that. Django will not show any db connection error message (or mail them to admins). It is appreciated if django do not try to connect to the database at all.

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• Trace/BPT trap when running feedparser inside a Thread object

  - by simao

  Hello, I am trying to run a Thread to parse a list of links using the universal feed parser, but when I start the thread I get a Trace/BPT trap. Here's the code I am using: class parseRssFiles(Thread): def __init__ (self,rssLinks): Thread.__init__(self) self.rssLinks = rssLinks def run(self): self.rssContents = [ feedparser.parse(link) for link in rssLinks] Is there any other way to do this? Link to the report generated by Mac OS X 10.6.2: http://simaom.com/trace.txt Thanks

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• Sqlite / SQLAlchemy: how to enforce Foreign Keys?

  - by Nick Perkins

  The new version of SQLite has the ability to enforce Foreign Key constraints, but for the sake of backwards-compatibility, you have to turn it on for each database connection separately! sqlite> PRAGMA foreign_keys = ON; I am using SQLAlchemy -- how can I make sure this always gets turned on? What I have tried is this: engine = sqlalchemy.create_engine('sqlite:///:memory:', echo=True) engine.execute('pragma foreign_keys=on') ...but it is not working!...What am I missing?

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• Uploading file from file object with PyCurl

  - by Tom

  I'm attempting to upload a file like this: import pycurl c = pycurl.Curl() values = [ ("name", "tom"), ("image", (pycurl.FORM_FILE, "tom.png")) ] c.setopt(c.URL, "http://upload.com/submit") c.setopt(c.HTTPPOST, values) c.perform() c.close() This works fine. However, this only works if the file is local. If I was to fetch the image such that: import urllib2 resp = urllib2.urlopen("http://upload.com/people/tom.png") How would I pass resp.fp as a file object instead of writing it to a file and passing the filename? Is this possible?

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• Math on Django Templates

  - by Leandro Abilio

  Here's another question about Django. I have this code: views.py cursor = connections['cdr'].cursor() calls = cursor.execute("SELECT * FROM cdr where calldate > '%s'" %(start_date)) result = [SQLRow(cursor, r) for r in cursor.fetchall()] return render_to_response("cdr_user.html", {'calls':result }, context_instance=RequestContext(request)) I use a MySQL query like that because the database is not part of a django project. My cdr table has a field called duration, I need to divide that by 60 and multiply the result by a float number like 0.16. Is there a way to multiply this values using the template tags? If not, is there a good way to do it in my views? My template is like this: {% for call in calls %} <tr class="{% cycle 'odd' 'even' %}"><h3> <td valign="middle" align="center"><h3>{{ call.calldate }}</h3></td> <td valign="middle" align="center"><h3>{{ call.disposition }}</h3></td> <td valign="middle" align="center"><h3>{{ call.dst }}</h3></td> <td valign="middle" align="center"><h3>{{ call.billsec }}</h3></td> <td valign="middle" align="center">{{ (call.billsec/60)*0.16 }}</td></h3> </tr> {% endfor %} The last is where I need to show the value, I know the "(call.billsec/60)*0.16" is impossible to be done there. I wrote it just to represent what I need to show.

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• How to customize pickle for django model objects

  - by muudscope

  I need to pickle a complex object that refers to django model objects. The standard pickling process stores a denormalized object in the pickle. So if the object changes on the database between pickling and unpickling, the model is now out of date. (I know this is true with in-memory objects too, but the pickling is a convenient time to address it.) So what I'd like is a way to not pickle the full django model object. Instead just store its class and id, and re-fetch the contents from the database on load. Can I specify a custom pickle method for this class? I'm happy to write a wrapper class around the django model to handle the lazy fetching from db, if there's a way to do the pickling.

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• How to create a custom admin configuration panel in Django?

  - by Matteo

  Hi, I would like to create a configuration panel for the homepage of the web-app I'm designing with Django. This configuration panel should let me choose some basic options like highlighting some news, setting a showcase banner, and so on. Basically I don't need an app with different rows, but just a panel page with some configuration options. The automatically generated administration area created by Django doesn't seem to handle this feature as far as I can see, so I'm asking you for some directions. Any hint is highly appreciated. Thank you in advance. Matteo

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• My method is being recognized within my own program. Newbie mistake probably.

  - by Sergio Tapia

  Here's my code: sentenceToTranslate = raw_input("Please write in the sentence you want to translate: ") words = sentenceToTranslate.split(" ") for word in words: if isVowel(word[0]): print "TEST" def isVowel(letter): if letter.lower() == "a" or letter.lower() == "e" or letter.lower() == "i" or letter.lower() == "o" or letter.lower() == "u": return True else: return False The error I get is: NameError: name 'isVowel' is not defined What am I doing wrong?

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• Repetitive content in docstrings

  - by Morgoth

  What are good ways to deal with repetitive content in docstrings? I have many functions that take 'standard' arguments, which have to be explained in the docstring, but it would be nice to write the relevant parts of the docstring only once, as this would be much easier to maintain and update. I naively tried the following: arg_a = "a: a very common argument" def test(a): ''' Arguments: %s ''' % arg_a pass But this does not work, because when I do help(test) I don't see the docstring. Is there a good way to do this?

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• Is it possible to calculate distance on GeoDjango in a SELECT statement?

  - by alex

  I am using MYSQL. I have a table with 1 column, a Point field. I want to SELECT all rows that have a point with a distance less than 50 meters of my given point. Simple enough, right? Below is how it's done in RAW SQL. But of course, I want to use GeoDjango to do this. cursor.execute("SELECT * FROM project_location WHERE\ (GLength(LineStringFromWKB(LineString(asbinary(utm), asbinary(PointFromWKB(point(%s, %s)))))) < 50)\

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• How can I test to see if a class contains a particular attribute?

  - by BryanWheelock

  How can I test to see if a class contains a particular attribute? In [14]: user = User.objects.get(pk=2) In [18]: user.__dict__ Out[18]: {'date_joined': datetime.datetime(2010, 3, 17, 15, 20, 45), 'email': u'[email protected]', 'first_name': u'', 'id': 2L, 'is_active': 1, 'is_staff': 0, 'is_superuser': 0, 'last_login': datetime.datetime(2010, 3, 17, 16, 15, 35), 'last_name': u'', 'password': u'sha1$44a2055f5', 'username': u'DickCheney'} In [25]: hasattr(user, 'username') Out[25]: True In [26]: hasattr(User, 'username') Out[26]: False I'm having a weird bug where more attributes are showing up than I actually define. I want to conditionally stop this. e.g. if not hasattr(User, 'karma'): User.add_to_class('karma', models.PositiveIntegerField(default=1))

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• Hide deprecated methods from tab completion

  - by Morgoth

  I would like to control which methods appear when a user uses tab-completion on a custom object in ipython - in particular, I want to hide functions that I have deprecated. I still want these methods to be callable, but I don't want users to see them and start using them if they are inspecting the object. Is this something that is possible?

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• Sizers... - wxPython

  - by Francisco Aleixo

  Ok, so I'm learning about sizers in wxPython and I was wondering if it was possible to do something like: ============================================== |WINDOW TITLE _ [] X| |============================================| |xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx| |xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx| |xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx| |xxxxxxxxxxxxxxxxxxNOTEBOOKxxxxxxxxxxxxxxxxxx| |xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx| |xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx| |xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx| |________ ___________| |IMAGE | |LoginForm | |________| |___________| ============================================== NOTE:Yeah, I literally got this from http://stackoverflow.com/questions/1892110/wxpython-picking-the-right-sizer-to-use-in-an-application With NOTEBOOK expanded to left and bottom, IMAGE to align to left and bottom and loginform align to right and bottom and I managed to do almost everything but now I have a problem.. The problem is that I can't align Loginform and Image separately (im using Box Sizers), and I would like to. This is the code I'm using that is causing the problem at the moment, any help is appreciated. NOTE:The code might be (HUGELY) sloppy as I'm still learning box sizers. sizer = wx.BoxSizer(wx.VERTICAL) sizer1 = wx.BoxSizer(wx.HORIZONTAL) sizer1.Add(self.nb,1, wx.EXPAND) sizer.Add(sizer1,1, wx.LEFT | wx.RIGHT | wx.EXPAND, 10) sizer.Add((-1, 25)) sizer2 = wx.BoxSizer(wx.VERTICAL) sizer2.Add(self.userLabel, 0) sizer2.Add(self.userText, 0) sizer2.Add(self.pwdLabel, 0) sizer2.Add(self.pwdText, 0) sizer2.Add(self.rem, 0) sizer3 = wx.BoxSizer(wx.HORIZONTAL) sizer3.Add(self.login, 0) sizer3.Add(self.sair,0, wx.LEFT, 5) sizer2.Add(sizer3, 0) sizer4 = wx.BoxSizer(wx.HORIZONTAL) sizer4.Add(image, 1, wx.LEFT | wx.BOTTOM) sizer4.Add(sizer2,0, wx.RIGHT | wx.BOTTOM , 5) sizer.Add(sizer4,0, wx.ALIGN_RIGHT | wx.RIGHT, 10)

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• BioPython: extracting sequence IDs from a Blast output file

  - by Jon

  Hi, I have a BLAST output file in XML format. It is 22 query sequences with 50 hits reported from each sequence. And I want to extract all the 50x22 hits. This is the code I currently have, but it only extracts the 50 hits from the first query. from Bio.Blast import NCBIXM blast_records = NCBIXML.parse(result_handle) blast_record = blast_records.next() save_file = open("/Users/jonbra/Desktop/my_fasta_seq.fasta", 'w') for alignment in blast_record.alignments: for hsp in alignment.hsps: save_file.write('>%s\n' % (alignment.title,)) save_file.close() Somebody have any suggestions as to extract all the hits? I guess I have to use something else than alignments. Hope this was clear. Thanks! Jon

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• Beautifulsoup recursive attribute

  - by Marcos Placona

  Hi, trying to parse an XML with Beautifulsoup, but hit a brick wall when trying to use the "recursive" attribute with findall() I have a pretty odd xml format shown below: <?xml version="1.0"?> <catalog> <book id="bk101"> <author>Gambardella, Matthew</author> <title>XML Developer's Guide</title> <genre>Computer</genre> <price>44.95</price> <publish_date>2000-10-01</publish_date> <description>An in-depth look at creating applications with XML.</description> <catalog>true</catalog> </book> <book id="bk102"> <author>Ralls, Kim</author> <title>Midnight Rain</title> <genre>Fantasy</genre> <price>5.95</price> <publish_date>2000-12-16</publish_date> <description>A former architect battles corporate zombies, an evil sorceress, and her own childhood to become queen of the world.</description> <catalog>false</catalog> </book> </catalog> As you can see, the catalog tag repeats inside the book tag, which causes an error when I try to to something like: from BeautifulSoup import BeautifulStoneSoup as BSS catalog = "catalog.xml" def open_rss(): f = open(catalog, 'r') return f.read() def rss_parser(): rss_contents = open_rss() soup = BSS(rss_contents) items = soup.findAll('catalog', recursive=False) for item in items: print item.title.string rss_parser() As you will see, on my soup.findAll I've added recursive=false, which in theory would make it no recurse through the item found, but skip to the next one. This doesn't seem to work, as I always get the following error: File "catalog.py", line 17, in rss_parser print item.title.string AttributeError: 'NoneType' object has no attribute 'string' I'm sure I'm doing something stupid here, and would appreciate if someone could give me some help on how to solve this problem. Changing the HTML structure is not an option, this this code needs to perform well as it will potentially parse a large XML file. Thanks in advance, Marcos

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• How to integrate a Ipython console in a PyQT application

  - by user1800689

  I am developing PyQt software for my lab. In this software, I am loading different kind of RAW and analyzed data from a mySQL database (usually in arrays). I would like to integrate an Iython console in a Widget, so that I could interact easily with these data. I had some difficulties with Ipython 0.13 to do this. Here is what I already have (The whole code is very long, so I just show the part containing the widget, the Ipython console and the corresponding import line, if you need more, just tell me): ##I load everything useful to my application, including the following line from IPython.frontend.qt.console.qtconsoleapp import IPythonQtConsoleApp ##then is my whole software ##here is a class containing the Graphical User Interface elements. A button call the following function. self.Shell_Widget is the widget containing the Ipython console, self.MainWindow is the application mainwindow def EmbeddedIpython(self): """ This function should launch an Ipython console """ self.Shell_Widget = QtGui.QDockWidget(self.MainWindow) #Widget creation self.MainWindow.addDockWidget(4,self.Shell_Widget) self.Shell_Widget.setMinimumSize(400,420) console = IPythonQtConsoleApp() #Console Creation console.initialize() console.start() self.Shell_Widget.show() So, as wanted, an Ipython console is launched, and seems to work, but I can not access the whole application variables ,arrays etc... I think the Ipython console is launched independently from my software, but here is my limit in programming... Does someone know how to launch Ipython within my application? Maybe a missing parameter, or a different way to integrate Ipython. for information, this doesn't work: Embedding IPython Qt console in a PyQt application Thank you for your help!!

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• How to display total record count against models in django admin

  - by Rog

  Is there a neat way to make the record/object count for a model appear on the main model list in the admin module? I have found techniques for showing counts of related objects within sets in the list_display page (and I can see the total in the pagination section at the bottom of the same), but haven't come across a neat way to show the record count at the model list level.

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