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  • Avoiding nesting two for loops

    - by chavanak
    Hi, Please have a look at the code below: import string from collections import defaultdict first_complex=open( "residue_a_chain_a_b_backup.txt", "r" ) first_complex_lines=first_complex.readlines() first_complex_lines=map( string.strip, first_complex_lines ) first_complex.close() second_complex=open( "residue_a_chain_a_c_backup.txt", "r" ) second_complex_lines=second_complex.readlines() second_complex_lines=map( string.strip, second_complex_lines ) second_complex.close() list_1=[] list_2=[] for x in first_complex_lines: if x[0]!="d": list_1.append( x ) for y in second_complex_lines: if y[0]!="d": list_2.append( y ) j=0 list_3=[] list_4=[] for a in list_1: pass for b in list_2: pass if a==b: list_3.append( a ) kvmap=defaultdict( int ) for k in list_3: kvmap[k]+=1 print kvmap Normally I use izip or izip_longest to club two for loops, but this time the length of the files are different. I don't want a None entry. If I use the above method, the run time becomes incremental and useless. How am I supposed to get the two for loops going? Cheers, Chavanak

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  • Convert object to DateRange

    - by user655832
    I'm querying an underlying PostgreSQL database using Pandas 0.8. Pandas is returning the DataFrame properly but the underlying timestamp column in my database is being returned as a generic "object" type in Pandas. As I would eventually like to seasonal normalization of my data I am curious as to how to convert this generic "object" column to something that is appropriate for analysis. Here is my current code to retrieve the data: # get records from db example import pandas.io.sql as psql import psycopg2 # define query to get all subs created this year QRY = """ select i i, i * random() f, case when random() > 0.5 then true else false end t, (current_date - (i*random())::int)::timestamp with time zone tsz from generate_series(1,1000) as s(i) order by 4 ; """ CONN_STRING = "host='localhost' port=5432 dbname='postgres' user='postgres'" # connect to db conn = psycopg2.connect(CONN_STRING) # get some data set index on relid column df = psql.frame_query(QRY, con=conn) print "Row count retrieved: %i" % (len(df),) Thanks for any help you can render. M

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  • Writing good tests for Django applications

    - by Ludwik Trammer
    I've never written any tests in my life, but I'd like to start writing tests for my Django projects. I've read some articles about tests and decided to try to write some tests for an extremely simple Django app or a start. The app has two views (a list view, and a detail view) and a model with four fields: class News(models.Model): title = models.CharField(max_length=250) content = models.TextField() pub_date = models.DateTimeField(default=datetime.datetime.now) slug = models.SlugField(unique=True) I would like to show you my tests.py file and ask: Does it make sense? Am I even testing for the right things? Are there best practices I'm not following, and you could point me to? my tests.py (it contains 11 tests): # -*- coding: utf-8 -*- from django.test import TestCase from django.test.client import Client from django.core.urlresolvers import reverse import datetime from someproject.myapp.models import News class viewTest(TestCase): def setUp(self): self.test_title = u'Test title: bareksc' self.test_content = u'This is a content 156' self.test_slug = u'test-title-bareksc' self.test_pub_date = datetime.datetime.today() self.test_item = News.objects.create( title=self.test_title, content=self.test_content, slug=self.test_slug, pub_date=self.test_pub_date, ) client = Client() self.response_detail = client.get(self.test_item.get_absolute_url()) self.response_index = client.get(reverse('the-list-view')) def test_detail_status_code(self): """ HTTP status code for the detail view """ self.failUnlessEqual(self.response_detail.status_code, 200) def test_list_status_code(self): """ HTTP status code for the list view """ self.failUnlessEqual(self.response_index.status_code, 200) def test_list_numer_of_items(self): self.failUnlessEqual(len(self.response_index.context['object_list']), 1) def test_detail_title(self): self.failUnlessEqual(self.response_detail.context['object'].title, self.test_title) def test_list_title(self): self.failUnlessEqual(self.response_index.context['object_list'][0].title, self.test_title) def test_detail_content(self): self.failUnlessEqual(self.response_detail.context['object'].content, self.test_content) def test_list_content(self): self.failUnlessEqual(self.response_index.context['object_list'][0].content, self.test_content) def test_detail_slug(self): self.failUnlessEqual(self.response_detail.context['object'].slug, self.test_slug) def test_list_slug(self): self.failUnlessEqual(self.response_index.context['object_list'][0].slug, self.test_slug) def test_detail_template(self): self.assertContains(self.response_detail, self.test_title) self.assertContains(self.response_detail, self.test_content) def test_list_template(self): self.assertContains(self.response_index, self.test_title)

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  • django newbie question : cant start a new project

    - by Moayyad Yaghi
    hello . I'm totally new to django . and I'm using its documentation to get help on how to use it but seems like something is missing. i installed django using setup.py install command and i added the ( django/bin ) to system path variable but. i still cant start a new project i use the following syntax to start a project : django-admin.py startproject myNewProject but it says Type 'django-admin.py help' for usage. 1 do i miss anything ? thank u

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  • verbose_name for a model's method

    - by mawimawi
    How can I set a verbose_name for a model's method, so that it might be displayed in the admin's change_view form? example: class Article(models.Model): title = models.CharField(max_length=64) created_date = models.DateTimeField(....) def created_weekday(self): return self.created_date.strftime("%A") in admin.py: class ArticleAdmin(admin.ModelAdmin): readonly_fields = ('created_weekday',) fields = ('title', 'created_weekday') Now the label for created_weekday is "Created Weekday", but I'd like it to have a different label which should be i18nable using ugettext_lazy as well. I've tried created_weekday.verbose_name=... after the method, but that did not show any result. Is there a decorator or something I can use, so I could make my own "verbose_name" / "label" / whateverthename is?

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  • Google App Engine appcfg.py data_upload Authentication fail

    - by Pradeep Upadhyay
    Hi, I am using appcfg.py to upload data to datastore from a csv file. But every time I try, I am getting error: [info ] Authentication failed even if i am using Admin id and password. In my app.yaml file I am having: handlers: - url: /remote_api script: $PYTHON_LIB/google/appengine/ext/remote_api/handler.py login: admin - url: .* script: MainHandler.py Can anybody please help me? Thanks in advance.

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  • How to call the __del__ method?

    - by Verrtex
    I am reading a code. There is a class in which __del__ method is defined. I figured out that this method is used to destroy an instance of the class. However, I cannot find a place where this method is used. The main reason for that is that I do not know how this method is used, probably not like that: obj1.del(). So, my questions is how to call the __del__ method? Thank you for any help.

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  • Django: Get remote IP address inside settings.py

    - by Silver Light
    Hello! I want to enable debug (DEBUG = True) For my Django project only if it runs on localhost. How can I get user IP address inside settings.py? I would like something like this to work: #Debugging only on localhost if user_ip = '127.0.0.1': DEBUG = True else: DEBUG = False How do I put user IP address in user_ip variable inside settings.py file?

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  • How do I code this relationship in SQLAlchemy?

    - by Martin Del Vecchio
    I am new to SQLAlchemy (and SQL, for that matter). I can't figure out how to code the idea I have in my head. I am creating a database of performance-test results. A test run consists of a test type and a number (this is class TestRun below) A test suite consists the version string of the software being tested, and one or more TestRun objects (this is class TestSuite below). A test version consists of all test suites with the given version name. Here is my code, as simple as I can make it: from sqlalchemy import * from sqlalchemy.ext.declarative import declarative_base from sqlalchemy.orm import relationship, backref, sessionmaker Base = declarative_base() class TestVersion (Base): __tablename__ = 'versions' id = Column (Integer, primary_key=True) version_name = Column (String) def __init__ (self, version_name): self.version_name = version_name class TestRun (Base): __tablename__ = 'runs' id = Column (Integer, primary_key=True) suite_directory = Column (String, ForeignKey ('suites.directory')) suite = relationship ('TestSuite', backref=backref ('runs', order_by=id)) test_type = Column (String) rate = Column (Integer) def __init__ (self, test_type, rate): self.test_type = test_type self.rate = rate class TestSuite (Base): __tablename__ = 'suites' directory = Column (String, primary_key=True) version_id = Column (Integer, ForeignKey ('versions.id')) version_ref = relationship ('TestVersion', backref=backref ('suites', order_by=directory)) version_name = Column (String) def __init__ (self, directory, version_name): self.directory = directory self.version_name = version_name # Create a v1.0 suite suite1 = TestSuite ('dir1', 'v1.0') suite1.runs.append (TestRun ('test1', 100)) suite1.runs.append (TestRun ('test2', 200)) # Create a another v1.0 suite suite2 = TestSuite ('dir2', 'v1.0') suite2.runs.append (TestRun ('test1', 101)) suite2.runs.append (TestRun ('test2', 201)) # Create another suite suite3 = TestSuite ('dir3', 'v2.0') suite3.runs.append (TestRun ('test1', 102)) suite3.runs.append (TestRun ('test2', 202)) # Create the in-memory database engine = create_engine ('sqlite://') Session = sessionmaker (bind=engine) session = Session() Base.metadata.create_all (engine) # Add the suites in version1 = TestVersion (suite1.version_name) version1.suites.append (suite1) session.add (suite1) version2 = TestVersion (suite2.version_name) version2.suites.append (suite2) session.add (suite2) version3 = TestVersion (suite3.version_name) version3.suites.append (suite3) session.add (suite3) session.commit() # Query the suites for suite in session.query (TestSuite).order_by (TestSuite.directory): print "\nSuite directory %s, version %s has %d test runs:" % (suite.directory, suite.version_name, len (suite.runs)) for run in suite.runs: print " Test '%s', result %d" % (run.test_type, run.rate) # Query the versions for version in session.query (TestVersion).order_by (TestVersion.version_name): print "\nVersion %s has %d test suites:" % (version.version_name, len (version.suites)) for suite in version.suites: print " Suite directory %s, version %s has %d test runs:" % (suite.directory, suite.version_name, len (suite.runs)) for run in suite.runs: print " Test '%s', result %d" % (run.test_type, run.rate) The output of this program: Suite directory dir1, version v1.0 has 2 test runs: Test 'test1', result 100 Test 'test2', result 200 Suite directory dir2, version v1.0 has 2 test runs: Test 'test1', result 101 Test 'test2', result 201 Suite directory dir3, version v2.0 has 2 test runs: Test 'test1', result 102 Test 'test2', result 202 Version v1.0 has 1 test suites: Suite directory dir1, version v1.0 has 2 test runs: Test 'test1', result 100 Test 'test2', result 200 Version v1.0 has 1 test suites: Suite directory dir2, version v1.0 has 2 test runs: Test 'test1', result 101 Test 'test2', result 201 Version v2.0 has 1 test suites: Suite directory dir3, version v2.0 has 2 test runs: Test 'test1', result 102 Test 'test2', result 202 This is not correct, since there are two TestVersion objects with the name 'v1.0'. I hacked my way around this by adding a private list of TestVersion objects, and a function to find a matching one: versions = [] def find_or_create_version (version_name): # Find existing for version in versions: if version.version_name == version_name: return (version) # Create new version = TestVersion (version_name) versions.append (version) return (version) Then I modified my code that adds the records to use it: # Add the suites in version1 = find_or_create_version (suite1.version_name) version1.suites.append (suite1) session.add (suite1) version2 = find_or_create_version (suite2.version_name) version2.suites.append (suite2) session.add (suite2) version3 = find_or_create_version (suite3.version_name) version3.suites.append (suite3) session.add (suite3) Now the output is what I want: Suite directory dir1, version v1.0 has 2 test runs: Test 'test1', result 100 Test 'test2', result 200 Suite directory dir2, version v1.0 has 2 test runs: Test 'test1', result 101 Test 'test2', result 201 Suite directory dir3, version v2.0 has 2 test runs: Test 'test1', result 102 Test 'test2', result 202 Version v1.0 has 2 test suites: Suite directory dir1, version v1.0 has 2 test runs: Test 'test1', result 100 Test 'test2', result 200 Suite directory dir2, version v1.0 has 2 test runs: Test 'test1', result 101 Test 'test2', result 201 Version v2.0 has 1 test suites: Suite directory dir3, version v2.0 has 2 test runs: Test 'test1', result 102 Test 'test2', result 202 This feels wrong to me; it doesn't feel right that I am manually keeping track of the unique version names, and manually adding the suites to the appropriate TestVersion objects. Is this code even close to being correct? And what happens when I'm not building the entire database from scratch, as in this example. If the database already exists, do I have to query the database's TestVersion table to discover the unique version names? Thanks in advance. I know this is a lot of code to wade through, and I appreciate the help.

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  • How to set up Atana Studio 3 Themes in Pydev

    - by willy1234x1
    I've installed the Aptana Studio 3 preview and noticed it has support for themes (such as a bespin style or Ruby envy) and I'd love to use the Bespin one in Pydev but so far I've had no luck getting it to work, anyone have a clue as to how to get it to work? Video showing the themes in action.

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  • PAM authentication problem

    - by mdipierro
    I am using this module to authenticate using pam: http://code.google.com/p/web2py/source/browse/gluon/contrib/pam.py I can call authenticate('username','password') and it returns True/ False. It works for any 'username' but 'root'. My guess is that there is a security restriction in PAM that does not allow to check for the root password. I need to be able to check the root password. Is there anything I can change in the pam.conf or somewhere else to remove this restriction?

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  • Send a "304 Not Modified" for images stored in the datastore

    - by Emilien
    I store user-uploaded images in the Google App Engine datastore as db.Blob, as proposed in the docs. I then serve those images on /images/<id>.jpg. The server always sends a 200 OK response, which means that the browser has to download the same image multiple time (== slower) and that the server has to send the same image multiple times (== more expensive). As most of those images will likely never change, I'd like to be able to send a 304 Not Modified response. I am thinking about calculating some kind of hash of the picture when the user uploads it, and then use this to know if the user already has this image (maybe send the hash as an Etag?) I have found this answer and this answer that explain the logic pretty well, but I have 2 questions: Is it possible to send an Etag in Google App Engine? Has anyone implemented such logic, and/or is there any code snippet available?

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  • Duplicate django query set?

    - by Piotr Czapla
    I have a simple django's query set like: qs = AModel.objects.exclude(state="F").order_by("order") I'd like to use it as follows: qs[0:3].update(state='F') expected = qs[3] # throws error here But last statement throws: "Cannot update a query once a slice has been taken." How can I duplicate the query set?

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  • Twisted - how to create multi protocol process and send the data between the protocols

    - by SpankMe
    Hey, Im trying to write a program that would be listening for data (simple text messages) on some port (say tcp 6666) and then pass them to one or more different protocols - irc, xmpp and so on. I've tried many approaches and digged the Internet, but I cant find easy and working solution for such task. The code I am currently fighting with is here: http://pastebin.com/ri7caXih I would like to know how to from object like: ircf = ircFactory('asdfasdf', '#asdf666') get access to self protocol methods, because this: self.protocol.dupa1(msg) returns error about self not being passed to active protocol object. Or maybe there is other, better, easier and more kosher way to create single reactor with multiple protocols and have actions triggeres when a message arrives on any of them, and then pass that message to other protocols for handling/processing/sending? Any help will be highly appreciated!

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  • Django multiple generic_inline_formset in a view

    - by Can Burak Cilingir
    We have a bunch of formsets: EmailAddressInlineFormSet = generic_inlineformset_factory( EmailAddress, extra=1, exclude=["created_by","last_modified_by"]) emailaddressformset = EmailAddressInlineFormSet( instance=person, prefix="emailaddress") # [ more definitions ] and, in the view, we process them as: emailaddressformset = EmailAddressInlineFormSet( request.POST, instance=person, prefix="emailaddress") # [ more definitions ] So, nothing fancy or unordinary. The unfortunate or unordinary fact is, we have 15 of these formsets, one for email addresses, other for phone numbers etc. so the view code is ugly and not-so-manageable. What would be the most unhackish way to handle this number of formsets in a single view? At the end -i guess- I'm looking for a class or a functionality like multiple_generic_inline_formset and open to all kind of suggestions or discussions.

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  • How do I launch background jobs w/ paramiko?

    - by sophacles
    Here is my scenario: I am trying to automate some tasks using Paramiko. The tasks need to be started in this order (using the notation (host, task)): (A, 1), (B, 2), (C, 2), (A,3), (B,3) -- essentially starting servers and clients for some testing in the correct order. Further, because in the tests networking may get mucked up, and because I need some of the output from the tests, I would like to just redirect output to a file. In similar scenarios the common response is to use 'screen -m -d' or to use 'nohup'. However with paramiko's exec_cmd, nohup doesn't actually exit. Using: bash -c -l nohup test_cmd & doesnt work either, exec_cmd still blocks to process end. In the screen case, output redirection doesn't work very well, (actually, doesnt work at all the best I can figure out). So, after all that explanation, my question is: is there an easy elegant way to detach processes and capture output in such a way as to end paramiko's exec_cmd blocking? Update The dtach command works nicely for this!

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  • Tkinter Gui to read in csv file and generate buttons based on the entries in the first row

    - by Thomas Jensen
    I need to write a gui in Tkinter that can choose a csv file, read it in and generate a sequence of buttons based on the names in the first row of the csv file (later the data in the csv file should be used to run a number of simulations). So far I have managed to write a Tkinter gui that will read the csv file, but I am stomped as to how I should proceed: from Tkinter import * import tkFileDialog import csv class Application(Frame): def __init__(self, master = None): Frame.__init__(self,master) self.grid() self.createWidgets() def createWidgets(self): top = self.winfo_toplevel() self.menuBar = Menu(top) top["menu"] = self.menuBar self.subMenu = Menu(self.menuBar) self.menuBar.add_cascade(label = "File", menu = self.subMenu) self.subMenu.add_command( label = "Read Data",command = self.readCSV) def readCSV(self): self.filename = tkFileDialog.askopenfilename() f = open(self.filename,"rb") read = csv.reader(f, delimiter = ",") app = Application() app.master.title("test") app.mainloop() Any help is greatly appreciated!

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  • Problem bounding name to a class in Django

    - by martinthenext
    Hello! I've got a view function that has to decide which form to use depending on some conditions. The two forms look like that: class OpenExtraForm(forms.ModelForm): class Meta: model = Extra def __init__(self, *args, **kwargs): super(OpenExtraForm, self).__init__(*args, **kwargs) self.fields['opening_challenge'].label = "lame translation" def clean_opening_challenge(self): challenge = self.cleaned_data['opening_challenge'] if challenge is None: raise forms.ValidationError('??????? ???, ??????????? ?????? ???. ???????????') return challenge class HiddenExtraForm(forms.ModelForm): class Meta: model = Extra exclude = ('opening_challenge') def __init__(self, *args, **kwargs): super(HiddenExtraForm, self).__init__(*args, **kwargs) The view code goes like that: @login_required def manage_extra(request, extra_id=None, hidden=False): if not_admin(request.user): raise Http404 if extra_id is None: # Adding a new extra extra = Extra() if hidden: FormClass = HiddenExtraForm else: FormClass = OpenExtraForm else: # Editing an extra extra = get_object_or_404(Extra, pk=extra_id) if extra.is_hidden(): FromClass = HiddenExtraForm else: FormClass = OpenExtraForm if request.POST: form = FormClass(request.POST, instance=extra) if form.is_valid(): form.save() return HttpResponseRedirect(reverse(view_extra, args=[extra.id])) else: form = FormClass(instance=extra) return render_to_response('form.html', { 'form' : form, }, context_instance=RequestContext(request) ) The problem is somehow if extra.is_hidden() returns True, the statement FromClass = HiddenExtraForm doesn't work. I mean, in all other conditions that are used in the code it works fine: the correct Form classes are intantiated and it all works. But if extra.is_hidden(), the debugger shows that the condition is passed and it goes to the next line and does nothing! As a result I get a UnboundLocalVar error which says FormClass hasn't been asssigned at all. Any ideas on what's happening?

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  • get average from set of objects in django

    - by dotty
    Hay, i have a simple rating system for a property. You give it a mark out of 5 (stars). The models are defined like this def Property(models.Model) # stuff here def Rating(models.Model) property = models.ForeignKey(Property) stars = models.IntegerField() What i want to do is get a property, find all the Rating objects, collect them, then get the average 'stars' from them. any ideas how to do this?

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  • Editting ForeignKey from "child" table

    - by profuel
    I'm programming on py with django. I have models: class Product(mymodels.Base): title = models.CharField() price = models.ForeignKey(Price) promoPrice = models.ForeignKey(Price, related_name="promo_price") class Price(mymodels.Base): value = models.DecimalField(max_digits=10, decimal_places=3) taxValue = models.DecimalField("Tax Value", max_digits=10, decimal_places=3) valueWithTax = models.DecimalField("Value with Tax", max_digits=10, decimal_places=3) I want to see INPUTs for both prices when editing product, but cannot find any possibility to do that. inlines = [...] works only from Price to Product, which is stupid in this case. Thanx for adnvance.

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  • Removing specific ticks from matplotlib plot

    - by Jsg91
    I'm trying to remove the origin ticks from my plot below to stop them overlapping, alternatively just moving them away from each other would also be great I tried this: xticks = ax.xaxis.get_major_ticks() xticks[0].label1.set_visible(False) yticks = ax.yaxis.get_major_ticks() yticks[0].label1.set_visible(False) However this removed the first and last ticks from the y axis like so: Does anyone have an idea about how to do this? Any help would be greatly appreciated.

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