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  • Mixing Matplotlib patches with polar plot?

    - by Roger
    I'm trying to plot some data in polar coordinates, but I don't want the standard ticks, labels, axes, etc. that you get with the Matplotlib polar() function. All I want is the raw plot and nothing else, as I'm handling everything with manually drawn patches and lines. Here are the options I've considered: 1) Drawing the data with polar(), hiding the superfluous stuff (with ax.axes.get_xaxis().set_visible(False), etc.) and then drawing my own axes (with Line2D, Circle, etc.). The problem is when I call polar() and subsequently add a Circle patch, it's drawn in polar coordinates and ends up looking like an infinity symbol. Also zooming doesn't seem to work with the polar() function. 2) Skip the polar() function and somehow make my own polar plot manually using Line2D. The problem is I don't know how to make Line2D draw in polar coordinates and haven't figured out how to use a transform to do that. Any idea how I should proceed?

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  • Django extending user model and displaying form

    - by MichalKlich
    Hello, I am writing website and i`d like to implement profile managment. Basic thing would be to edit some of user details by themself, like first and last name etc. Now, i had to extend User model to add my own stuff, and email address. I am having troubles with displaying form. Example will describe better what i would like achieve. This is mine extended user model. class UserExtended(models.Model): user = models.ForeignKey(User, unique=True) kod_pocztowy = models.CharField(max_length=6,blank=True) email = models.EmailField() This is how my form looks like. class UserCreationFormExtended(UserCreationForm): def __init__(self, *args, **kwargs): super(UserCreationFormExtended, self).__init__(*args, **kwargs) self.fields['email'].required = True self.fields['first_name'].required = False self.fields['last_name'].required = False class Meta: model = User fields = ('username', 'first_name', 'last_name', 'email') It works fine when registering, as i need allow users to put username and email but when it goes to editing profile it displays too many fields. I would not like them to be able to edit username and email. How could i disable fields in form? Thanks for help.

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  • django admin site - filtering available objects for user

    - by JPG
    I have models that belong to some 'group' (Company class). I want to add users, who will also belong to a one group and should be able to edit/manage/add objects with membership in associated group. something like: class Company() class Something() company = ForeignKey(Company) user Microsoft_admin company = ForeignKey(Company) and this user should only see and edit objects belonging to associated Company in the Admin Interface. How to acomplish that?

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  • Parse large XML file w/ script or use BioPython API ?

    - by jeremy04
    Hey guys this is my first question on here. I'm trying to make a local copy of the UniprotKB in SQL. The UniprotKB is 2.1GB, and it comes in XML and a special text format used by SwissProt Here are my options: 1) Use a SAX parser (XML) - I chose Ruby, and Nokogiri. I started writing the parser, but my initial reaction: how would I map the XML schema to the SAX parser? 2) BioPython - I already have BioSQL/Biopython installed, which literally created my SQL schema for me, and I was able to successfully insert one SwissProt/Uniprot txt file into the database. I'm running it right now (crosses fingers) on the entire 2.1gb. Here is the code I'm running: from Bio import SeqIO from BioSQL import BioSeqDatabase from Bio import SwissProt server = BioSeqDatabase.open_database(driver = "MySQLdb", user = "root", passwd = "", host="localhost", db = "bioseqdb") db = server["uniprot"] iterator = SeqIO.parse(open("/path/to/uniprot_sprot.dat", "r"), "swiss") db.load(iterator) server.commit() Edit: it's now crashing because the transactions are getting locked (since the tables are Innodb) Error Number: 1205 Lock wait timeout exceeded; try restarting transaction. I'm using MySQL version: 5.1.43 Should I switch my database to Postgrelsql ?

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  • pyramid traversal resource url no attribute __name__

    - by Santana
    So I have: resources.py: def _add(obj, name, parent): obj.__name__ = name obj.__parent__ = parent return obj class Root(object): __parent__ = __name__ = None def __init__(self, request): super(Root, self).__init__() self.request = request self.collection = request.db.post def __getitem__(self, key): if u'profile' in key: return Profile(self.request) class Profile(dict): def __init__(self, request): super(Profile, self).__init__() self.__name__ = u'profile' self.__parent__ = Root self.collection = request.db.posts def __getitem__(self, name): post = Dummy(self.collection.find_one(dict(username=name))) return _add(post, name, self) and I'm using MongoDB and pyramid_mongodb views.py: @view_config(context = Profile, renderer = 'templates/mytemplate.pt') def test_view(request): return {} and in mytemplate.pt: <p tal:repeat='item request.context'> ${item} </p> I can echo what's in the database (I'm using mongodb), but when I provided a URL for each item using resource_url() <p tal:repeat='item request.context'> <a href='${request.resource_url(item)}'>${item}</a> </p> I got an error: 'dict' object has no attribute '__name__', can someone help me?

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  • Django dictionary in templates: Grab key from another objects attribute

    - by Jordan Messina
    I have a dictionary called number_devices I'm passing to a template, the dictionary keys are the ids of a list of objects I'm also passing to the template (called implementations). I'm iterating over the list of objects and then trying to use the object.id to get a value out of the dict like so: {% for implementation in implementations %} {{ number_devices.implementation.id }} {% endfor %} Unfortunately number_devices.implementation is evaluated first, then the result.id is evaluated obviously returning and displaying nothing. I can't use parentheses like: {{ number_devices.(implementation.id) }} because I get a parse error. How do I get around this annoyance in Django templates? Thanks for any help!

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  • failure on creating a Scikits.TimeSeries object

    - by user311906
    Hi All I am trying to create a scikit.timeseries object starting from 2 datetime objects. If I understood correctly it should be possible to create a scikits.timeseries starting from datetime objects. I try the following code but it says that Insufficient parameters. The 2 datetime differs for few microseconds. In this case what should be the value for freq parameter? Is what I am trying allowed? In theory, since timeseries can be based on datetime objects it should be possible to hanlde up to microsecond , is this correct? I think that this is not really clear to me. Regards Eo import datetime import sckilits.timeseries as ts tm1 = datetime.datetime( 2010,1,1, 10,10,2, 123456 ) tm2 = datetime.datetime( 2010,1,1, 10,10,2, 345678 ) d = [ tm1, tm2 ] tseries = ts.time_series( dates=d ) tseries = ts.time_series( d )

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  • Problem opening Solr *.jsp pages with urllib2.urlopen.

    - by nestling
    I'm trying to open a page at http://localhost:8983/solr/admin/stats.jsp but urllib2.urlopen returns a blank string. It works fine for solr/ and solr/admin, but for all the pages above /solr/admin/ I get nothing but a blank string. 76]: t = urllib2.urlopen('http://localhost:8983/solr/admin/stats.jsp') 77]: s = t.read() 78]: s 78]: 79]: type(s) 79]: <type 'str'> 80]: urllib2.urlopen('http://localhost:8983/solr/admin/registry.jsp').read() 80]: In [84]: urllib2.urlopen('http://localhost:8983/solr/admin/schema.jsp').read() Out[84]: I know this isn't a problem with urllib2, but beyond that I am at a loss. I wish solr (or jetty) had an easy to get to log file, so that perhaps it could tell me its side of the story.

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  • Add string to another string

    - by daemonfire300
    Hi there, I currently encountered a problem: I want to handle adding strings to other strings very efficiently, so I looked up many methods and techniques, and I figured the "fastest" method. But I quite can not understand how it actually works: def method6(): return ''.join([`num` for num in xrange(loop_count)]) From source (Method 6) Especially the ([numfor num in xrange(loop_count)]) confused me totally.

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  • Encoding with url and api

    - by user2950824
    So I have this web app set up and running and it works fine for any username that you request, but when i try http://mrcastelo.pythonanywhere.com/lol/euw/Nazaré, it simply doesnt work - the error that I get on the server is the following: iddata= getJSON(urllolbase+region+urlid+username) #SummonerID UnicodeDecodeError: 'ascii' codec can't decode byte 0xc3 in position 5: ordinal not in range(128) It is annoying me greatly, I've tried some other threads but none of them came to a fix. The api that I am using (www.legendaryapi.com) does accept this because this works. Any idea on how to fix this?

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  • how to show the right word in my code, my code is : os.urandom(64)

    - by zjm1126
    My code is: print os.urandom(64) which outputs: > "D:\Python25\pythonw.exe" "D:\zjm_code\a.py" \xd0\xc8=<\xdbD' \xdf\xf0\xb3>\xfc\xf2\x99\x93 =S\xb2\xcd'\xdbD\x8d\xd0\\xbc{&YkD[\xdd\x8b\xbd\x82\x9e\xad\xd5\x90\x90\xdcD9\xbf9.\xeb\x9b>\xef#n\x84 which isn't readable, so I tried this: print os.urandom(64).decode("utf-8") but then I get: > "D:\Python25\pythonw.exe" "D:\zjm_code\a.py" Traceback (most recent call last): File "D:\zjm_code\a.py", line 17, in <module> print os.urandom(64).decode("utf-8") File "D:\Python25\lib\encodings\utf_8.py", line 16, in decode return codecs.utf_8_decode(input, errors, True) UnicodeDecodeError: 'utf8' codec can't decode bytes in position 0-3: invalid data What should I do to get human-readable output?

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  • How can I load an MP3 or similar music file for display and analysis in wxWidgets?

    - by Jon Cage
    I'm developing a GUI in wxPython which allows a user to generate sequences of colours for some toys I'm building. Part of the program needs to load an MP3 (and potentially other formats further down the line) and display it to the user. That should be sufficient to get started but later I'd like to add features like identifying beats and some crude frequency analysis. Is there any simple way of loading / understanding an MP3's contents to display a plot of its amplitudes to the screen using wxWidgets? I later intend to port to C++/wxWidgets for speed and to avoid having to distribute wxPython.

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  • How to exclude results with get_object_or_404?

    - by googletorp
    In Django you can use the exclude to create SQL similar to not equal. An example could be. Model.objects.exclude(status='deleted') Now this works great and exclude is very flexible. Since I'm a bit lazy, I would like to get that functionality when using get_object_or_404, but I haven't found a way to do this, since you cannot use exclude on get_object_or_404. What I want is to do something like this: model = get_object_or_404(pk=id, status__exclude='deleted') But unfortunately this doesn't work as there isn't an exclude query filter or similar. The best I've come up with so far is doing something like this: object = get_object_or_404(pk=id) if object.status == 'deleted': return HttpResponseNotfound('text') Doing something like that, really defeats the point of using get_object_or_404, since it no longer is a handy one-liner. Alternatively I could do: object = get_object_or_404(pk=id, status__in=['list', 'of', 'items']) But that wouldn't be very maintainable, as I would need to keep the list up to date. I'm wondering if I'm missing some trick or feature in django to use get_object_or_404 to get the desired result?

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  • Increasing figure size in Matplotlib

    - by Anirudh
    I am trying to plot a graph from a distance matrix. The code words fine and gives me a image in 800 * 600 pixels. The image being too small, All the nodes are packed together. I want increase the size of the image. so I added the following line to my code - figure(num=None, figsize=(10, 10), dpi=80, facecolor='w', edgecolor='k') After this all I get is a blank 1000 * 1000 image file. My overall code - import networkx as nx import pickle import matplotlib.pyplot as plt print "Reading from pickle." p_file = open('pickles/names') Names = pickle.load(p_file) p_file.close() p_file = open('pickles/distance') Dist = pickle.load(p_file) p_file.close() G = nx.Graph() print "Inserting Nodes." for n in Names: G.add_node(n) print "Inserting Edges." for i in range(601): for j in range(601): G.add_edge(Names[i],Names[j],weight=Dist[i][j]) print "Drawing Graph." nx.draw(G) print "Saving Figure." #plt.figure(num=None, figsize=(10, 10)) plt.savefig('new.png') print "Success!"

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  • pandas read rotated csv files

    - by EricCoding
    Is there any function in pandas that can directly read a rotated csv file? To be specific, the header information in the first col instead of the first row. For example: A 1 2 B 3 5 C 6 7 and I would like the final DataFrame this way A B C 1 3 5 2 5 7 Of corse we can get around this problem using some data wangling techniques like transpose and slicing. I am wondering there should be a quick way in API but I could not find it.

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  • Setting 0/1-to-1 relationship in SQLAlchemy?

    - by Timmy
    is there a proper way of setting up a 0/1-to-1 relationship? i want to be able to check if the related item exists without creating it: if item.relationship is None: item.relationship = item2() but it creates the insert statements on the if statement

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  • chatbot using twisted and wokkel

    - by dmitriy k.
    I am writing a chatbot using Twisted and wokkel and everything seems to be working except that bot periodically logs off. To temporarily fix that I set presence to available on every connection initialized. Does anyone know how to prevent going offline? (I assume if i keep sending available presence every minute or so bot wont go offline but that just seems too wasteful.) Suggestions anyone? Here is the presence code: class BotPresenceClientProtocol(PresenceClientProtocol): def connectionInitialized(self): PresenceClientProtocol.connectionInitialized(self) self.available(statuses={None: 'Here'}) def subscribeReceived(self, entity): self.subscribed(entity) self.available(statuses={None: 'Here'}) def unsubscribeReceived(self, entity): self.unsubscribed(entity) Thanks in advance.

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  • virtualenvwrapper .hook problem

    - by Wraith
    I've used virtualenvwrapper, but I'm having problems running it on a new computer. My .bashrc file is updated per the instructions: export WORKON_HOME=$DEV_HOME/projects source /usr/local/bin/virtualenvwrapper.sh But when source is run, I get the following: bash: /25009.hook: Permission denied bash: /25009.hook: No such file or directory This previous post leads me to believe the filename is being recycled and locked because virtualenvwrapper.sh uses $$. Is there any way to fix this?

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  • Simplifying for-if messes with better structure?

    - by HH
    # Description: you are given a bitwise pattern and a string # you need to find the number of times the pattern matches in the string # any one liner or simple pythonic solution? import random def matchIt(yourString, yourPattern): """find the number of times yourPattern occurs in yourString""" count = 0 matchTimes = 0 # How can you simplify the for-if structures? for coin in yourString: #return to base if count == len(pattern): matchTimes = matchTimes + 1 count = 0 #special case to return to 2, there could be more this type of conditions #so this type of if-conditionals are screaming for a havoc if count == 2 and pattern[count] == 1: count = count - 1 #the work horse #it could be simpler by breaking the intial string of lenght 'l' #to blocks of pattern-length, the number of them is 'l - len(pattern)-1' if coin == pattern[count]: count=count+1 average = len(yourString)/matchTimes return [average, matchTimes] # Generates the list myString =[] for x in range(10000): myString= myString + [int(random.random()*2)] pattern = [1,0,0] result = matchIt(myString, pattern) print("The sample had "+str(result[1])+" matches and its size was "+str(len(myString))+".\n" + "So it took "+str(result[0])+" steps in average.\n" + "RESULT: "+str([a for a in "FAILURE" if result[0] != 8])) # Sample Output # # The sample had 1656 matches and its size was 10000. # So it took 6 steps in average. # RESULT: ['F', 'A', 'I', 'L', 'U', 'R', 'E']

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