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  • problem with hierarchical clustering in Python

    - by user248237
    I am doing a hierarchical clustering a 2 dimensional matrix by correlation distance metric (i.e. 1 - Pearson correlation). My code is the following (the data is in a variable called "data"): from hcluster import * Y = pdist(data, 'correlation') cluster_type = 'average' Z = linkage(Y, cluster_type) dendrogram(Z) The error I get is: ValueError: Linkage 'Z' contains negative distances. What causes this error? The matrix "data" that I use is simply: [[ 156.651968 2345.168618] [ 158.089968 2032.840106] [ 207.996413 2786.779081] [ 151.885804 2286.70533 ] [ 154.33665 1967.74431 ] [ 150.060182 1931.991169] [ 133.800787 1978.539644] [ 112.743217 1478.903191] [ 125.388905 1422.3247 ]] I don't see how pdist could ever produce negative numbers when taking 1 - pearson correlation. Any ideas on this? thank you.

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  • Get jQuery Error if PHP Breaks

    - by Norbert
    I have a PHP script that breaks if a variable is not populated and it isn't added to the database, but jQuery handles this as a success and I get this error: TypeError: Result of expression 'data' [null] is not an object. Here's the jQuery script: $.ajax({ type: "POST", url: "/clase/do-add", data: $("#adauga").serialize(), dataType: "json", error: function (xhr, textStatus, errorThrown) { alert('Try again.'); }, success: function(data) { var dlHTML = '<dl id="' + data.id + '"> [too long] </dl>'; $('form#adauga').after(dlHTML); $('#main dl:first').hide().fadeIn(); adaugaClasaSubmit.removeAttr('disabled'); adaugaClasa.removeAttr('readonly'); adaugaClasa.val("").focus(); } });

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  • calculate next line numbers

    - by osomanden
    Weird question I guess.. But I am not very math wiz - soo here goes.. I am trying to create a patterne (or variable patterns based on selection) based on x and y numbers (2 rows and 4 columns) and the direction of the counting of x numbers like: 1-2-3-4 5-6-7-8 That one is easy, when number of x-columns is reached, next line and continue x count. But with eg. this one (still 2 rows and 4 columns): 1-2-3-4 8-7-6-5 upsie.. what if it is eg. 3++ rows and still 4 columns? 1-2-3-4 8-7-6-5 9-10-11-12 what would be the formula for this - or other possible variations (teaser for variations): 9-10-11-12 8-7-6-5 1-2-3-4 or reversed

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  • How to handle Clean URIs in Classic ASP using PATH_INFO?

    - by Mario
    I'm trying to handle Clean URIs in a Classic ASP application. In PHP, I was able to use URIs like http://example.com/index.php/foo/bar/baz and have /foo/bar/baz available in the PATH_INFO environment variable. (I usually add a rewrite rule so I do not need the index.php segment) However, I don't seem to be able to mimic this in Classic ASP. If I try http://example.com/index.asp/foo/bar/baz, I get a 404 error. Is there a way to add a path after the index.asp segment and get the PHP like behaviour in ASP? Note: I'm currently using the workaround of rewriting URLs of the form: http://example.com/foo/bar/baz/ to index.asp?path=/foo/bar/baz since I can't seem to get index.asp/foo/bar/baz to work.

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  • Can I turn off implicit Python unicode conversions to find my mixed-strings bugs?

    - by Tal Weiss
    When profiling our code I was surprised to find millions of calls to C:\Python26\lib\encodings\utf_8.py:15(decode) I started debugging and found that across our code base there are many small bugs, usually comparing a string to a unicode or adding a sting and a unicode. Python graciously decodes the strings and performs the following operations in unicode. How kind. But expensive! I am fluent in unicode, having read Joel Spolsky and Dive Into Python... I try to keep our code internals in unicode only. My question - can I turn off this pythonic nice-guy behavior? At least until I find all these bugs and fix them (usually by adding a u'u')? Some of them are extremely hard to find (a variable that is sometimes a string...). Python 2.6.5 (and I can't switch to 3.x).

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  • slicing 2d numpy array

    - by MedicalMath
    I have a 2d numpy array called FilteredOutput that has 2 columns and 10001 rows, though the number of rows is a variable. I am trying to take the 2nd column of FilteredOutput and use it to populate a new 1d numpy array called timeSeriesArray using the following line of code: timeSeriesArray=p.array(FilteredOutput[:,0]) I got this syntax from the following link. But the problem is that I am getting the following error message: TypeError: list indices must be integers, not tuple Can anyone show me the proper syntax for populating the 1d array timeSeriesArray with the contents of the second column of the 2d array FilteredOutput?

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  • Initialize a static member ( an array) in C++

    - by Jimmy zhang
    I intended to create a class which only have static members and static functions. One of the member variable is an array. Would it be possible to initialize it without using constructors? I am having lots of linking errors right now... Class A{ public: static char a[128]; static void do_something(); } How would you initialize a[128]? Why can't I initialize a[128] by directly specifying its value like in C? a[128={1,2,3,...};

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  • AS3 Memory management when instantiating extended classes

    - by araid
    I'm developing an AS3 application which has some memory leaks I can't find, so I'd like to ask some newbie questions about memory management. Imagine I have a class named BaseClass, and some classes that extend this one, such as ClassA, ClassB, etc. I declare a variable: myBaseClass:BaseClass = new ClassA(); After a while, I use it to instantiate a new object: myBaseClass = new ClassB(); some time after myBaseClass = new ClassC(); and the same thing keeps happening every x millis, triggered by a timer. Is there any memory problem here? Are the unused instances correctly deleted by the garbage collector? Thanks!

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  • filtering elements from list of lists in Python?

    - by user248237
    I want to filter elements from a list of lists, and iterate over the elements of each element using a lambda. For example, given the list: a = [[1,2,3],[4,5,6]] suppose that I want to keep only elements where the sum of the list is greater than N. I tried writing: filter(lambda x, y, z: x + y + z >= N, a) but I get the error: <lambda>() takes exactly 3 arguments (1 given) How can I iterate while assigning values of each element to x, y, and z? Something like zip, but for arbitrarily long lists. thanks, p.s. I know I can write this using: filter(lambda x: sum(x)..., a) but that's not the point, imagine that these were not numbers but arbitrary elements and I wanted to assign their values to variable names.

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  • How to store and access ajax data in javascript without using global variables ?

    - by mike_t2e
    I may be missing something obvious here, but how could I rewrite this code so that it doesn't need the theVariable to be a global variable ? <script language="javascript"> theVariable = ""; function setValue() /* called on page load */ { /* make ajax call to the server here */ theVariable = "a string of json data waiting to be eval()'d"; } function getValue() { alert(theVariable); } </script> <input type="button" onClick="javascript:getValue()" value="Get the value"> In my actual situation, the setValue function makes an ajax call to the server, receives a json string and the data from that is accessed when you mouseover various parts of the page. I end up using several global variables which works fine, but is messy and I'd like to know if there's a better and more elegant way of doing it ?

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  • Return popupmenu selection in MATLAB using one line of code

    - by Doresoom
    I have a GUI which uses a selection from a popupmenu in another callback. Is there a way to return the selected value of the popupmenu in only one line without creating any temporary variables? I've tried several solutions, but I've only managed two lines with one temporary variable: Three lines: list=get(handles.popupmenu1,'String'); val=get(handles.popupmenu1,'Value'); str=list{val}; Two lines: temp=get(handles.popupmenu1,{'String','Value'}); str=temp{1}{temp{2}}; Can anyone shave it down to one? PS, It's a dynamic menu, so I can't just use get(handles.popupmenu1,'Value') and ignore the string component altogether.)

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  • Can you explain what's going on in this Ruby code?

    - by samoz
    I'm trying to learn Ruby as well as Ruby on Rails right now. I'm following along with Learning Rails, 1st edition, but I'm having a hard time understanding some of the code. I generally do work in C, C++, or Java, so Ruby is a pretty big change for me. I'm currently stumped with the following block of code for a database migrator: def self.up create_table :entries do |t| t.string :name t.timestamps end end Where is the t variable coming from? What does it actually represent? Is it sort of like the 'i' in a for(i=0;i<5;i++) statement? Also, where is the :entries being defined at? (entries is the name of my controller, but how does this function know about that?)

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  • static setter method injection in Spring

    - by vishnu
    Hi, I have following requirement I wanted to pass http:\\localhost:9080\testws.cls value as setter injection through spring configuration file. How can i do this static variable setter injection for WSDL_LOCATION public class Code1 extends javax.xml.ws.Service { private final static URL CODE1_WSDL_LOCATION; static { URL url = null; try { url = new URL("http:\\localhost:9080\testws.cls"); } catch (MalformedURLException e) { e.printStackTrace(); } CODE1_WSDL_LOCATION = url; } public Code1(URL wsdlLocation, QName serviceName) { super(wsdlLocation, serviceName); } public Code1() { super(CODE1_WSDL_LOCATION, new QName("http://tempuri.org", "Code1")); } /** * * @return * returns Code1Soap */ @WebEndpoint(name = "Code1Soap") public Code1Soap getCode1Soap() { return (Code1Soap)super.getPort(new QName("http://tempuri.org", "Code1Soap"), Code1Soap.class); } } Please help me out.

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  • Float multiple fixed-width / varible-height boxes into 2 columns

    - by Jeremy H
    I'll try to explain this as best I can. I have multiple divs that are fixed-width but variable height. I want to float these boxes into two columns inside a fixed-width container. What happens when a give them all a float: left value, I get something like this: ######### ######### # box 1 # # box 2 # ######### # ..... # ......... # ..... # ......... ######### ######### ######### # box 3 # # box 4 # # ..... # # ..... # ######### ######### ######### ######### # box 5 # # box 6 # # ..... # ######### # ..... # ######### (The periods are white space) What I really would really like is the top of box 3 to touch the bottom of box 1. Any easy way to acheive this?

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  • Kohana -- Command Line

    - by swt83
    I'm trying to "faux-fork" a process (an email being sent via SMTP) in my web application, and the application is built on Kohana. $command = 'test/email'; exec('php index.php '.$command.' > /dev/null/ &', $errors, $response); I'm getting an error -- Notice: Undefined index: SERVER_NAME When I look into Kohana's index.php file, I see that it is looking for a variable named SERVER_NAME, but I guess it is coming up NULL because Kohana couldn't detect this value and set it prior to run. Any ideas how to get Kohana to run via command line?

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  • Matlab: Randomize and Split

    - by Null-Hypothesis
    I have following data matrix in Matlab, I am trying to actually split this into multiple segments by passing a variable to a matlab function. But before splitting I would like to shuffle the matrix. The size of my matrix is 150X4 s.data 5.1000 3.5000 1.4000 0.2000 4.9000 3.0000 1.4000 0.2000 4.7000 3.2000 1.3000 0.2000 4.6000 3.1000 1.5000 0.2000 5.0000 3.6000 1.4000 0.2000 .. s = data: [150x4 double] labels: [150x1 double] Coming from R environment I find MatLab is very strange. Initially I thought the columns in matrix has a relationshop like in a R dataframe but thats wrong in my assumption.

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  • Using Jquery $getJSON How do I dynamically create data for the [data] parameter after Url param?

    - by Breadtruck
    I have no problems getting the Json to work and parse the json return. I was just wondering how I could build a dynamic "whatever data is" and stick it into [data] to pass my parameters from there and not manually append them to the url. From jquery website example: $.getJSON("test.js", { name: "John", time: "2pm" }, function(json){ alert("JSON Data: " + json.users[3].name); }); I thought I could build a string ( which doesn't make sense anyway ) and drop it inside the { }, but I obviously don't understand that part. name: isn't a string and you can't put a variable in that part, so how would I dynamically put items into whatever [data] is.

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  • How to build third party libraries with Android NDK

    - by heiko.witte
    How can I compile third party libraries with the android NDK? I am compiling a wrapper which implements the JNI functions as a shared lib, which depends on another 3rd party lib (HTK). I don't know how to setup the makefile. The following does not work: LOCAL_PATH := $(call my-dir) include $(CLEAR_VARS) include HTKLib/Android.mk LOCAL_PATH := $(call my-dir) include $(CLEAR_VARS) LOCAL_MODULE := gaitfuncs LOCAL_SRC_FILES := gaitfuncs.c %LOCAL_LDLIBS := -L$(SYSROOT)/usr/lib -llog include $(BUILD_SHARED_LIBRARY) The second makefile should then build a static lib which my shared lib links to. How can I include this subdir makefile properly? Is this the correct way of doing it? And as a bonus: Are there wildcards for the LOCAL_SRC_FILES variable to take all files ending in .c for example. Thanks!

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  • How to put/get INT to/from a WCHAR array ?

    - by nimo
    how can I put a INT type variable to a wchar array ? Thanks EDIT: Sorry for the short question. Yes we can cast INT to a WCHAR array using WCHAR*, but when we are retrieving back the result (WCHAR[] to INT), I just realize that we need to read size of 2 from WCHAR array since INT is 4 BYTEs which is equal to 2 WCHARs. WCHAR arData[20]; INT iVal = 0; wmemcpy((WCHAR*)&iVal, arData, (sizeof(INT))/2); Is this the safest way to retrieve back INT value from WCHAR array

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  • AS3 Accessing Variables of Parent Class From Child

    - by TheDarkIn1978
    i'm trying to assign a parent's variable from the parent's child //Parent public class Main extends Sprite { public var selectedSquare:Sprite; public function Main() { //inits and adds new Square child class to display list } ... ------- //Child public function dragSquare(evt:MouseEvent):void { Sprite(parent).selectedSquare = this; //evil doesn't work! parent.addChild(this); this.startDrag(); } i'm receiving this error, but i'm casting parent from displayObjectContainer to a Sprite so i have no idea why it's not working. 1119: Access of possibly undefined property selectedSquare through a reference with static type flash.display:Sprite.

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  • About the fix for the interference between Company mode and Yasnippet

    - by janoChen
    Emacs wiki says: Company does interfere with Yasnippet’s native behaviour. Here’s a quick fix: http://gist.github.com/265010 The code is the following: (define-key company-active-map "\t" 'company-yasnippet-or-completion) (defun company-yasnippet-or-completion () (interactive) (if (yas/expansion-at-point) (progn (company-abort) (yas/expand)) (company-complete-common))) (defun yas/expansion-at-point () "Tested with v0.6.1. Extracted from `yas/expand-1'" (first (yas/current-key))) I placed that code in my .emacs and the following message appeared: Warning (initialization): An error occurred while loading `c:/Documents and Settings/Alex.AUTOINSTALL.001/Application Data/.emacs.elc': Symbol's value as variable is void: company-active-map To ensure normal operation, you should investigate and remove the cause of the error in your initialization file. Start Emacs with the `--debug-init' option to view a complete error backtrace. Do I have to place the fix code inside a YASnippet's .el file? or in my .emacs (which throws me an error)?

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  • android: Check if a View is bringed to front

    - by user329692
    Hi Guys! I made a custom component which simple extends a WebView This component is used into activities that are loaded from a tabhost. This component creates a timertask too. I'd like to execute the task only if the activity that contains the component is visible. Ex: public class MyWebView extends WebView { public MyWebView(Context context, AttributeSet as) { super(context,as); /** More code **/ TimerTask ttask = new TimerTask() { @Override public void run() { if (iamvisible) doStuff(); } }; timer = new Timer(); timer.schedule(ttask, refreshInterval * 1000, refreshInterval * 1000); } } How can I set the iamvisible variable? I tried overriding onWindowFocusChanged and onWindowVisibilityChanged but with no luck Regards in advance

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  • a simple secenerio to implement java script asp.net C#, question rephrased

    - by user287745
    i had asked this question before but got no answer correct. so, this is a simple thing textbox.text='user typing'; button:-store the value to a variable and a database. very simple nothing to it but there should be no post back, that is the page must not load again, try ajax? tried it not working i must a lot of time trying to implement this using java script ajax and read many many post, but for some reason i cannot implement the functionality correctly. please help. thank you

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  • XQuery fn:replace not behaving as expected

    - by CoolGravatar
    I have an Excel worksheet in XML format which contains <Cell ss:StyleID="s127"><Data ss:Type="String">A01-Replace</Data></Cell> I want to replace @A01-Replace with a different string. I'm using the XQuery's replace function like so: let $excel := doc("excel.xml") let $test := "another string" return replace($excel, "(A[0-9]+-Replace)", $test) Before calling replace, the variable $excel is valid XML upon output. However, when I output $excel after I call the replace function, all of the XML tags have been stripped, and $excel is a string with the content of the cells as its values. I would like to keep the XML tags there. Any ideas?

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  • How to increment a value using a C-Preprocessor in Objective-C?

    - by mystify
    Example: I try to do this: static NSInteger stepNum = 1; #define METHODNAME(i) -(void)step##i #define STEP METHODNAME(stepNum++) @implementation Test STEP { // do stuff... [self nextFrame:@selector(step2) afterDelay:1]; } STEP { // do stuff... [self nextFrame:@selector(step3) afterDelay:1]; } STEP { // do stuff... [self nextFrame:@selector(step4) afterDelay:1]; } // ... When building, Xcode complains that it can't increment stepNum. This seems logical to me, because at this time the code is not "alive" and this pre-processing substitution stuff happens before actually compiling the source code. Is there another way I could have an variable be incremented on every usage of STEP macro, the easy way?

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