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  • Converting Numpy Lstsq residual value to R^2

    - by whatnick
    I am performing a least squares regression as below (univariate). I would like to express the significance of the result in terms of R^2. Numpy returns a value of unscaled residual, what would be a sensible way of normalizing this. field_clean,back_clean = rid_zeros(backscatter,field_data) num_vals = len(field_clean) x = field_clean[:,row:row+1] y = 10*log10(back_clean) A = hstack([x, ones((num_vals,1))]) soln = lstsq(A, y ) m, c = soln [0] residues = soln [1] print residues

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  • How do I parse youtube xml for a specific entry?

    - by sharataka
    I am trying to return the duration of the video but am having trouble. #YOUTUBE FEED #download the file: file = urllib2.urlopen('http://gdata.youtube.com/feeds/api/videos/2s0vk2wEMtA') #convert to string: data = file.read() #close file because we dont need it anymore: file.close() #entire feed root = etree.fromstring(data) for entry in root: for item in entry: print item When I print item, I see as the last element: Element '{http://gdata.youtube.com/schemas/2007}duration' at 0x10c4fb7d0 But I don't know how to get the value from this. Any advice?

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  • overriding callbacks avoiding attribute pollution

    - by pygabriel
    I've a class that has some callbacks and its own interface, something like: class Service: def __init__(self): connect("service_resolved", self.service_resolved) def service_resolved(self, a,b c): ''' This function is called when it's triggered service resolved signal and has a lot of parameters''' the connect function is for example the gtkwidget.connect, but I want that this connection is something more general, so I've decided to use a "twisted like" approach: class MyService(Service): def my_on_service_resolved(self, little_param): ''' it's a decorated version of srvice_resolved ''' def service_resolved(self,a,b,c): super(MyService,self).service_resolved(a,b,c) little_param = "something that's obtained from a,b,c" self.my_on_service_resolved(little_param) So I can use MyService by overriding my_on_service_resolved. The problem is the "attributes" pollution. In the real implementation, Service has some attributes that can accidentally be overriden in MyService and those who subclass MyService. How can I avoid attribute pollution? What I've thought is a "wrapper" like approach but I don't know if it's a good solution: class WrapperService(): def __init__(self): self._service = service_resolved # how to override self._service.service_resolved callback? def my_on_service_resolved(self,param): ''' '''

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  • delete common dictionaries in list based on a value

    - by pythoonatic
    How would I delete all corresponding dictionaries in a list of dictionaries based on one of the dictionaries having a character in it. data = [ { 'x' : 'a', 'y' : '1' }, { 'x' : 'a', 'y' : '1/1' }, { 'x' : 'a', 'y' : '2' }, { 'x' : 'b', 'y' : '1' }, { 'x' : 'b', 'y' : '1' }, { 'x' : 'b', 'y' : '1' }, ] For example, how would I delete all of the x = a due to one of the y in the x=a having a / in it? Based on the example data above, here is where I would like to get to: cleaneddata = [ { 'x' : 'b', 'y' : '1' }, { 'x' : 'b', 'y' : '1' }, { 'x' : 'b', 'y' : '1' }, ]

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  • Parsing a Multi-Index Excel File in Pandas

    - by rhaskett
    I have a time series excel file with a tri-level column MultiIndex that I would like to successfully parse if possible. There are some results on how to do this for an index on stack overflow but not the columns and the parse function has a header that does not seem to take a list of rows. The ExcelFile looks like is like the following: Column A is all the time series dates starting on A4 Column B has top_level1 (B1) mid_level1 (B2) low_level1 (B3) data (B4-B100+) Column C has null (C1) null (C2) low_level2 (C3) data (C4-C100+) Column D has null (D1) mid_level2 (D2) low_level1 (D3) data (D4-D100+) Column E has null (E1) null (E2) low_level2 (E3) data (E4-E100+) ... So there are two low_level values many mid_level values and a few top_level values but the trick is the top and mid level values are null and are assumed to be the values to the left. So, for instance all the columns above would have top_level1 as the top multi-index value. My best idea so far is to use transpose, but the it fills Unnamed: # everywhere and doesn't seem to work. In Pandas 0.13 read_csv seems to have a header parameter that can take a list, but this doesn't seem to work with parse.

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  • Return more then One field from database SQLAlchemy

    - by David Neudorfer
    This line: used_emails = [row.email for row in db.execute(select([halo4.c.email], halo4.c.email!=''))] Returns: ['[email protected]', '[email protected]', '[email protected]', '[email protected]', '[email protected]'] I use this to find a match: if recipient in used_emails: If it finds a match I need to pull another field (halo4.c.code) from the database in the same row. Any suggestions on how to do this?

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  • Is it possible to use a back reference to specify the number of replications in a regular expression

    - by user307894
    Is it possible to use a back reference to specify the number of replications in a regular expression? foo= 'ADCKAL+2AG.+2AG.+2AG.+2AGGG+.+G+3AGGa4.' The substrings that start with '+[0-9]' followed by '[A-z]{n}.' need to be replaced with simply '+' where the variable n is the digit from earlier in the substring. Can that n be back referenced? For example (doesn't work) '+([0-9])[A-z]{/1}.' is the pattern I want replaced with "+" (that last dot can be any character and represents a quality score) so that foo should come out to ADCKAL++++G.G+. foo = 'ADCKAL+2AG.+2AG.+2AG.+2AGGG^+.+G+3AGGa4.' indelpatt = re.compile('\+([0-9])') while indelpatt.search(foo): indelsize=int(indelpatt.search(foo).group(1)) new_regex = '\+%s[ACGTNacgtn]{%s}.' % (indelsize,indelsize) newpatt=re.compile(new_regex) foo = newpatt.sub("+", foo) I'm probably missing an easier way to parse the string.

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  • Why is numpy c extension slow?

    - by Bitwise
    I am working on large numpy arrays, and some native numpy operations are too slow for my needs (for example simple operations such as "bitwise" A&B). I started looking into writing C extensions to try and improve performance. As a test case, I tried the example given here, implementing a simple trace calculation. I was able to get it to work, but was surprised by the performance: for a (1000,1000) numpy array, numpy.trace() was about 1000 times faster than the C extension! This happens whether I run it once or many times. Is this expected? Is the C extension overhead that bad? Any ideas how to speed things up?

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  • Is there any way to do this without using '__init__'?

    - by zjm1126
    class a(object): c=b()# how to call the b method d=4 def __init__(self): print self.c def b(self): return self.d+1 a() how to call the 'b' method not in the __init__ thanks the error is : Traceback (most recent call last): File "D:\zjm_code\a.py", line 12, in <module> class a(object): File "D:\zjm_code\a.py", line 13, in a c=b()# how to call the b method NameError: name 'b' is not defined

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  • How can I access the "through" object of a Django ManyToManyField?

    - by Macha
    I have the following models in my Django app. How can I from the Team model find all the User objects who have accepted as True in the Membership model? I know I need to use Team.objects.filter(), but I'm not sure how to check the value of the accepted field. from django.contrib.auth.models import User class Team(models.Model): members = models.ManyToManyField(User, through="Membership") class Membership(models.Model): user = models.ForeignKey(User) team = models.ForeignKey(Team) accepted = models.BooleanField(default=False)

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  • Detecting and interacting with long running process

    - by jacquesb
    I want a script to start and interact with a long running process. The process is started first time the script is executed, after that the script can be executed repeatedly, but will detect that the process is already running. The script should be able to interact with the process. I would like this to work on Unix and Windows. I am unsure how I do this. Specifically how do I detect if the process is already running and open a pipe to it? Should I use sockets (e.g. registering the server process on a known port and then check if it responds) or should I use "named pipes"? Or is there some easier way?

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  • How to check if a file is a textfile?

    - by daniels
    I have a folder full of files and i want to search some string inside them. The issue is that some files may be zip,exe,ogg,etc. Can i check somehow what kind of file is it so i only open and search through txt, php, etc files. I can't rely on the file extension.

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  • add new records using signal in django admin

    - by ganesh
    I've a model called broadcastinfo, It has fields viz.. info,userid...userid is excluded. when i add an new info, my broadcastinfo table should get the records of all userid from user table and the given message. Im trying this via signal.Any idea is highly appreciated. Thanks

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  • Django - count date between

    - by DJPy
    I have many record in my database wich contains datetime field (e.g. 2010-05-23 17:45:57). I want to count all records between e.g. 15:00 and 15:59 (it all can by from other day, month or year). How can I do this?

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  • wxWidgets/wxPython: Do two identical events cause two handlings?

    - by cool-RR
    When there are two identical events in the event loop, will wxPython handle both of them, or will it call the handler only once for them both? I mean, in my widget I want to have an event like EVT_NEED_TO_RECALCULATE_X. I want this event to be posted in all kinds of different circumstances that require x to be recalculated. However, even if there are two different reasons to recalculate x, only one recalculation needs to be done. How do I do this?

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  • ValueError: setting an array element with a sequence.

    - by MedicalMath
    This code: import numpy as p def firstfunction(): UnFilteredDuringExSummaryOfMeansArray = [] MeanOutputHeader=['TestID','ConditionName','FilterType','RRMean','HRMean','dZdtMaxVoltageMean','BZMean','ZXMean' ,'LVETMean','Z0Mean','StrokeVolumeMean','CardiacOutputMean','VelocityIndexMean'] dataMatrix = BeatByBeatMatrixOfMatrices[column] roughTrimmedMatrix = p.array(dataMatrix[1:,1:17]) trimmedMatrix = p.array(roughTrimmedMatrix,dtype=p.float64) myMeans = p.mean(trimmedMatrix,axis=0,dtype=p.float64) conditionMeansArray = [TestID,testCondition,'UnfilteredBefore',myMeans[3], myMeans[4], myMeans[6], myMeans[9] , myMeans[10], myMeans[11], myMeans[12], myMeans[13], myMeans[14], myMeans[15]] UnFilteredDuringExSummaryOfMeansArray.append(conditionMeansArray) secondfunction(UnFilteredDuringExSummaryOfMeansArray) return def secondfunction(UnFilteredDuringExSummaryOfMeansArray): RRDuringArray = p.array(UnFilteredDuringExSummaryOfMeansArray,dtype=p.float64)[1:,3] return firstfunction() Throws this error message: File "mypath\mypythonscript.py", line 3484, in secondfunction RRDuringArray = p.array(UnFilteredDuringExSummaryOfMeansArray,dtype=p.float64)[1:,3] ValueError: setting an array element with a sequence. However, this code works: import numpy as p a=range(24) b = p.reshape(a,(6,4)) c=p.array(b,dtype=p.float64)[:,2] I re-arranged the code a bit to put it into a cogent posting, but it should more or less have the same result. Can anyone show me what to do to fix the problem in the broken code above so that it stops throwing an error message?

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  • SqlAlchemy hangs after adding record in MS SQL

    - by Patrick
    I'm running SQLAlchemy on Jython and trying to connect to a MS SQL database using jTDS with windows authentication. I can query and delete just fine but when I try to insert new values it will hang when I commit. int 'before add' session.add(newVal) print 'after add' session.commit() print 'after commit' I see the first two print statements but not the last. My CPU maxes out and I can't even query the table directly using the MS SQL Management Studio. When I kill the Jython java process I can query again but the new values haven't been added. Strangely enough I can insert values directly using an SQL command: insert_sql = "INSERT INTO my_table (my_value) VALUES ('test_value')" session.execute(insert_sql) session.commit() Any ideas what I'm doing wrong?

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  • rb plugin the hot key not working

    - by Bunny Rabbit
    def activate(self,shell): self.shell = shell self.action = gtk.Action ('foo','bar','baz',None) self.activate_id = self.action.connect ('activate', self.call_bk_fn,self.shell) self.action_group = gtk.ActionGroup ('hot_key_action_group') self.action_group.add_action_with_accel (self.action, "<control>E") uim = shell.get_ui_manager () uim.insert_action_group (self.action_group, 0) uim.ensure_update () def call_bk_fn(self,shell): print('hello world') i am using the above code in a plugin for rhythmbox ,and here i am trying to register the key ctr+e so that the call_bk_fn gets called whenever the key combination is pressed , but its not working why is that so ?

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  • Sleeping a thread blocking stdin

    - by Sid
    Hey, I'm running a function which evaluates commands passed in using stdin and another function which runs a bunch of jobs. I need to make the latter function sleep at regular intervals but that seems to be blocking the stdin. Any advice on how to resolve this would be appreciated. The source code for the functions is def runJobs(comps, jobQueue, numRunning, limit, lock): while len(jobQueue) >= 0: print(len(jobQueue)); if len(jobQueue) > 0: comp, tasks = find_computer(comps, 0); #do something time.sleep(5); def manageStdin(): print "Global Stdin Begins Now" for line in fileinput.input(): try: print(eval(line)); except Exception, e: print e; --Thanks

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  • Should I use a class in this: Reading a XML file using lxml.

    - by PulpFiction
    Hi everyone. This question is in continuation to my previous question, in which I asked about passing around an ElementTree. I need to read the XML files only and to solve this, I decided to create a global ElementTree and then parse it wherever required. My question is: Is this an acceptable practice? I heard global variables are bad. If I don't make it global, I was suggested to make a class. But do I really need to create a class? What benefits would I have from that approach. Note that I would be handling only one ElementTree instance per run, the operations are read-only. If I don't use a class, how and where do I declare that ElementTree so that it available globally? (Note that I would be importing this module) Please answer this question in the respect that I am a beginner to development, and at this stage I can't figure out whether to use a class or just go with the functional style programming approach.

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  • sending the data from form to db in django

    - by BharatKrishna
    I have a form in which I can input text through text boxes. How do I make these data go into the db on clicking submit. this is the code of the form in the template. <form method="post" action="app/save_page"> <p> Title:<input type="text" name="title"/> </p> <p> Name:<input type="text" name="name"/> </p> <p> Phone:<input type="text" name="phone"/> </p> <p> Email:<input type="text" name="email"/> </p> <p> <textarea name="description" rows=20 cols=60> </textarea><br> </p> <input type="submit" value="Submit"/> </form> I have a function in the views.py for saving the data in the page. But I dont know how to impliment it properly: def save_page(request): title = request.POST["title"] name = request.POST["name"] phone = request.POST["phone"] email = request.POST["email"] description = request.POST["description"] Now how do I send these into the db? And what do I put in views.py so that those data goes into the db? so how do I open a database connection and put those into the db and save it? should I do something like : connection=sqlite3.connect('app.db') cursor= connection.cursor() ..... ..... connection.commit() connection.close() Thank you.

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  • Django admin panel doesn't work after modify default user model.

    - by damienix
    I was trying to extend user profile. I founded a few solutions, but the most recommended was to create new user class containing foreign key to original django.contrib.auth.models.User class. I did it with this so i have in models.py: class UserProfile(models.Model): user = models.ForeignKey(User, unique=True) website_url = models.URLField(verify_exists=False) and in my admin.py from django.contrib import admin from someapp.models import * from django.contrib.auth.admin import UserAdmin # Define an inline admin descriptor for UserProfile model class UserProfileInline(admin.TabularInline): model = UserProfile fk_name = 'user' max_num = 1 # Define a new UserAdmin class class MyUserAdmin(UserAdmin): inlines = [UserProfileInline, ] # Re-register UserAdmin admin.site.unregister(User) admin.site.register(User, MyUserAdmin) And now when I'm trying to create/edit user in admin panel i have an error: "Unknown column 'content_userprofile.id' in 'field list'" where content is my appname. I was trying to add line AUTH_PROFILE_MODULE = 'content.UserProfile' to my settings.py but with no effect. How to tell panel admin to know how to correctly display fields in user form?

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