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  • Convert a sequence of sequences to a dictionary and vice-versa

    - by louis
    One way to manually persist a dictionary to a database is to flatten it into a sequence of sequences and pass the sequence as an argument to cursor.executemany(). The opposite is also useful, i.e. reading rows from a database and turning them into dictionaries for later use. What's the best way to go from myseq to mydict and from mydict to myseq? >>> myseq = ((0,1,2,3), (4,5,6,7), (8,9,10,11)) >>> mydict = {0: (1, 2, 3), 8: (9, 10, 11), 4: (5, 6, 7)}

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  • PInvokeStackImbalance -- C# with offreg.dll ( windows ddk7 )

    - by user301185
    I am trying to create an offline registry in memory using the offreg.dll provided in the windows ddk 7 package. You can find out more information on the offreg.dll here: MSDN Currently, while attempted to create the hive using ORCreateHive, I receive the following error: "Managed Debugging Assistant 'PInvokeStackImbalance' has detected a problem. This is likely because the managed PInvoke signature does not match the unmanaged target signature. Check that the calling convention and parameters of the PInvoke signature match the target unmanaged signature." Here is the offreg.h file containing ORCreateHive: typedef PVOID ORHKEY; typedef ORHKEY *PORHKEY; VOID ORAPI ORGetVersion( __out PDWORD pdwMajorVersion, __out PDWORD pdwMinorVersion ); DWORD ORAPI OROpenHive ( __in PCWSTR lpHivePath, __out PORHKEY phkResult ); DWORD ORAPI ORCreateHive ( __out PORHKEY phkResult ); DWORD ORAPI ORCloseHive ( __in ORHKEY Handle ); The following is my C# code attempting to call the .dll and create the pointer for future use. using System.Runtime.InteropServices; namespace WindowsFormsApplication6 { public partial class Form1 : Form { public Form1() { InitializeComponent(); } [DllImport("offreg.dll", CharSet = CharSet.Auto, EntryPoint = "ORCreateHive", SetLastError=true, CallingConvention = CallingConvention.StdCall)] public static extern IntPtr ORCreateHive2(); private void button1_Click(object sender, EventArgs e) { try { IntPtr myHandle = ORCreateHive2(); } catch (Exception r) { MessageBox.Show(r.ToString()); } } } } I have been able to create pointers in the past with no issue utilizing user32.dll, icmp.dll, etc. However, I am having no such luck with offreg.dll. Thank you.

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  • Refresh decorator

    - by Morgoth
    I'm trying to write a decorator that 'refreshes' after being called, but where the refreshing only occurs once after the last function exits. Here is an example: @auto_refresh def a(): print "In a" @auto_refresh def b(): print "In b" a() If a() is called, I want the refresh function to be run after exiting a(). If b() is called, I want the refresh function to be run after exiting b(), but not after a() when called by b(). Here is an example of a class that does this: class auto_refresh(object): def __init__(self, f): print "Initializing decorator" self.f = f def __call__(self, *args, **kwargs): print "Before function" if 'refresh' in kwargs: refresh = kwargs.pop('refresh') else: refresh = False self.f(*args, **kwargs) print "After function" if refresh: print "Refreshing" With this decorator, if I run b() print '---' b(refresh=True) print '---' b(refresh=False) I get the following output: Initializing decorator Initializing decorator Before function In b Before function In a After function After function --- Before function In b Before function In a After function After function Refreshing --- Before function In b Before function In a After function After function So when written this way, not specifying the refresh argument means that refresh is defaulted to False. Can anyone think of a way to change this so that refresh is True when not specified? Changing the refresh = False to refresh = True in the decorator does not work: Initializing decorator Initializing decorator Before function In b Before function In a After function Refreshing After function Refreshing --- Before function In b Before function In a After function Refreshing After function Refreshing --- Before function In b Before function In a After function Refreshing After function because refresh then gets called multiple times in the first and second case, and once in the last case (when it should be once in the first and second case, and not in the last case).

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  • Performance of Java matrix math libraries?

    - by dfrankow
    We are computing something whose runtime is bound by matrix operations. (Some details below if interested.) This experience prompted the following question: Do folk have experience with the performance of Java libraries for matrix math (e.g., multiply, inverse, etc.)? For example: JAMA: http://math.nist.gov/javanumerics/jama/ COLT: http://acs.lbl.gov/~hoschek/colt/ Apache commons math: http://commons.apache.org/math/ I searched and found nothing. Details of our speed comparison: We are using Intel FORTRAN (ifort (IFORT) 10.1 20070913). We have reimplemented it in Java (1.6) using Apache commons math 1.2 matrix ops, and it agrees to all of its digits of accuracy. (We have reasons for wanting it in Java.) (Java doubles, Fortran real*8). Fortran: 6 minutes, Java 33 minutes, same machine. jvisualm profiling shows much time spent in RealMatrixImpl.{getEntry,isValidCoordinate} (which appear to be gone in unreleased Apache commons math 2.0, but 2.0 is no faster). Fortran is using Atlas BLAS routines (dpotrf, etc.). Obviously this could depend on our code in each language, but we believe most of the time is in equivalent matrix operations. In several other computations that do not involve libraries, Java has not been much slower, and sometimes much faster.

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  • How can this verbose, unpythonic routine be improved?

    - by fmark
    Is there a more pythonic way of doing this? I am trying to find the eight neighbours of an integer coordinate lying within an extent. I am interested in reducing its verbosity without sacrificing execution speed. def fringe8((px, py), (x1, y1, x2, xy)): f = [(px - 1, py - 1), (px - 1, py), (px - 1, py + 1), (px, py - 1), (px, py + 1), (px + 1, py - 1), (px + 1, py), (px + 1, py + 1)] f_inrange = [] for fx, fy in f: if fx < x1: continue if fx >= x2: continue if fy < y1: continue if fy >= y2: continue f_inrange.append((fx, fy)) return f_inrange

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  • pylab.savefig() and pylab.show() image difference

    - by Jack1990
    I'm making an script to automatically create plots from .xvg files, but there's a problem when I'm trying to use pylab's savefig() method. Using pylab.show() and saving from there, everything's fine. Using pylab.show() Using pylab.savefig() def producePlot(timestep, energy_values,type_line = 'r', jump = 1,finish = 100): fc = sp.interp1d(timestep[::jump], energy_values[::jump],kind='cubic') xnew = numpy.linspace(0, finish, finish*2) pylab.plot(xnew, fc(xnew),type_line) pylab.xlabel('Time in ps ') pylab.ylabel('kJ/mol') pylab.xlim(xmin=0, xmax=finish) def produceSimplePlot(timestep, energy_values,type_line = 'r', jump = 1,finish = 100): pylab.plot(timestep, energy_values,type_line) pylab.xlabel('Time in ps ') pylab.ylabel('kJ/mol') pylab.xlim(xmin=0, xmax=finish) def linearRegression(timestep, energy_values, type_line = 'g'): #, jump = 1,finish = 100): from scipy import stats import numpy #print 'fuck' timestep = numpy.asarray(timestep) slope, intercept, r_value, p_value, std_err = stats.linregress(timestep,energy_values) line = slope*timestep+intercept pylab.plot(timestep, line, type_line) def plottingTime(Title,file_name, timestep, energy_values ,loc, jump , finish): pylab.title(Title) producePlot(timestep,energy_values, 'b',jump, finish) linearRegression(timestep,energy_values) import numpy Average = numpy.average(energy_values) #print Average pylab.legend(("Average = %.2f" %(Average),'Linear Reg'),loc) #pylab.show() pylab.savefig('%s.jpg' %file_name[:-4], bbox_inches= None, pad_inches=0) #if __name__ == '__main__': #plottingTime(Title,timestep1, energy_values, jump =10, finish = 4800) def specialCase(Title,file_name, timestep, energy_values,loc, jump, finish): #print 'Working here ...?' pylab.title(Title) producePlot(timestep,energy_values, 'b',jump, finish) import numpy from pylab import * Average = numpy.average(energy_values) #print Average pylab.legend(("Average = %.2g" %(Average), Title),loc) locs,labels = yticks() yticks(locs, map(lambda x: "%.3g" % x, locs)) #pylab.show() pylab.savefig('%s.jpg' %file_name[:-4] , bbox_inches= None, pad_inches=0) Thanks in advance, John

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  • How to make socket.listen(1) work for some time and then continue rest of code???

    - by Rami Jarrar
    I'm making server that make a tcp socket and work over port range, with each port it will listen on that port for some time, then continue the rest of the code. like this:: import socket sck = socket.socket(socket.AF_INET, socket.SOCK_STREAM) sck.setsockopt(socket.SOL_SOCKET, socket.SO_REUSEADDR, 1) msg ='' ports = [x for x in xrange(4000)] while True: try: for i in ports: sck.bind(('',i)) ## sck.listen(1) ## make it just for some time and then continue this ## if there a connection do this conn, addr = sck.accept() msg = conn.recv(2048) ## do something ##if no connection continue the for loop conn.close() except KeyboardInterrupt: exit() so how i could make sck.listen(1) work just for some time ??

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  • Keeping track of changes - Django

    - by RadiantHex
    Hi folks!! I have various models of which I would like to keep track and collect statistical data. The problem is how to store the changes throughout time. I thought of various alternative: Storing a log in a TextField, open it and update it every time the model is saved. Alternatively pickle a list and store it in a TextField. Save logs on hard drive. What are your suggestions?

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  • How to not specify ruleset name when reading from config file?

    - by user102533
    When I read rules from a configuration file, I do something like this: IConfigurationSource configurationSource = new FileConfigurationSource("myvalidation.config"); var validator = ValidationFactory.CreateValidator<Salary>(configurationSource); The config file looks like this: <ruleset name="Default"> <properties> <property name="Address"> <validator lowerBound="10" lowerBoundType="Inclusive" upperBound="15" upperBoundType="Inclusive" negated="false" messageTemplate="" messageTemplateResourceName="" messageTemplateResourceType="" tag="" type="Microsoft.Practices.EnterpriseLibrary.Validation.Validators.StringLengthValidator, Microsoft.Practices.EnterpriseLibrary.Validation, Version=4.1.0.0, Culture=neutral, PublicKeyToken=null" name="String Length Validator" /> </property> </properties> </ruleset> My question is - is there a way to not specify the ruleset name? It's not required for me to specify a ruleset name if I am using the attribute approach and I can validate using: ValidationResults results = Validation.Validate(salary); Now when reading from config files, I have to specify the ruleset name. There is no overload of the CreateValidator method that accepts the configuration source without specifying the ruleset name. Also, the xml in the config file requires a name attribute for ruleset

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  • How do you efficiently bulk index lookups?

    - by Liron Shapira
    I have these entity kinds: Molecule Atom MoleculeAtom Given a list(molecule_ids) whose lengths is in the hundreds, I need to get a dict of the form {molecule_id: list(atom_ids)}. Likewise, given a list(atom_ids) whose length is in the hunreds, I need to get a dict of the form {atom_id: list(molecule_ids)}. Both of these bulk lookups need to happen really fast. Right now I'm doing something like: atom_ids_by_molecule_id = {} for molecule_id in molecule_ids: moleculeatoms = MoleculeAtom.all().filter('molecule =', db.Key.from_path('molecule', molecule_id)).fetch(1000) atom_ids_by_molecule_id[molecule_id] = [ MoleculeAtom.atom.get_value_for_datastore(ma).id() for ma in moleculeatoms ] Like I said, len(molecule_ids) is in the hundreds. I need to do this kind of bulk index lookup on almost every single request, and I need it to be FAST, and right now it's too slow. Ideas: Will using a Molecule.atoms ListProperty do what I need? Consider that I am storing additional data on the MoleculeAtom node, and remember it's equally important for me to do the lookup in the molecule-atom and atom-molecule directions. Caching? I tried memcaching lists of atom IDs keyed by molecule ID, but I have tons of atoms and molecules, and the cache can't fit it. How about denormalizing the data by creating a new entity kind whose key name is a molecule ID and whose value is a list of atom IDs? The idea is, calling db.get on 500 keys is probably faster than looping through 500 fetches with filters, right?

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  • Silence output from SimpleXMLRPCServer

    - by Corey Goldberg
    I am running an xml-rpc server using SimpleXMLRPCServer from the stdlib. My code looks something like this: import SimpleXMLRPCServer import socket class RemoteStarter: def start(self): return 'foo' rs = RemoteStarter() host = socket.gethostbyaddr(socket.gethostname())[0] port = 9000 server = SimpleXMLRPCServer.SimpleXMLRPCServer((host, port)) server.register_instance(rs) server.serve_forever() every time the 'start' method gets called remotely, the server prints an access line like this: <server_name> - - [10/Mar/2010 13:06:20] "POST /RPC2 HTTP/1.0" 200 - I can't figure out a way to silence the output so it doesn't print these access lines to stdout. anyone?

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  • A graph-based tuple merge?

    - by user1644030
    I have paired values in tuples that are related matches (and technically still in CSV files). Neither of the paired values are necessarily unique. tupleAB = (A####, B###), (A###, B###), (A###, B###)... tupleBC = (B####, C###), (B###, C###), (B###, C###)... tupleAC = (A####, C###), (A###, C###), (A###, C###)... My ideal output would be a dictionary with a unique ID and a list of "reinforced" matches. The way I try to think about it is in a graph-based context. For example, if: tupleAB[x] = (A0001, B0012) tupleBC[y] = (B0012, C0230) tupleAC[z] = (A0001, C0230) This would produce: output = {uniquekey0001, [A0001, B0012, C0230]} Ideally, this would also be able to scale up to more than three tuples (for example, adding a "D" match that would result in an additional three tuples - AD, BD, and CD - and lists of four items long; and so forth). In regards to scaling up to more tuples, I am open to having "graphs" that aren't necessarily fully connected, i.e., every node connected to every other node. My hunch is that I could easily filter based on the list lengths. I am open to any suggestions. I think, with a few cups of coffee, I could work out a brute force solution, but I thought I'd ask the community if anyone was aware of a more elegant solution. Thanks for any feedback.

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  • Using PyLab to create a 2D graph from two separate lists

    - by user324333
    Hey Guys, This seems like a basic problem with an easy answer but I simply cannot figure it out no matter how much I try. I am trying to create a line graph based on two lists. For my x-axis, I want my list to be a set of strings. x_axis_list = ["Jan-06","Jul-06","Jan-07","Jul-07","Jan-08"] y_axis_list = [5,7,6,8,9] Any suggestions on how to best graph these items?

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  • Tokenize a command string

    - by pocoa
    I have string like this: command "http://www.mysite.com" some_param="string param" some_param2=50 I want to tokenize this string into: command "http://www.mysite.com" some_param="string param" some_param2=50 I know it's possible to split with spaces but these parameters can also be seperated by commas, like: command "http://www.mysite.com", some_param="string param", some_param2=50 I tried to do it like this: \w+\=?\"?.+\"? but it didn't work.

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  • import webkit fails with an ImportError

    - by Stuart K
    When I import webkit on Ubuntu 10.04 I get the following error: Traceback (most recent call last): File "test.py", line 1, in <module> import webkit File "/usr/lib/pymodules/python2.6/webkit/__init__.py", line 19, in <module> import webkit ImportError: /usr/lib/pymodules/python2.6/webkit/webkit.so: undefined symbol: webkit_web_frame_get_global_context I think all the packages I need are installed. Does anyone have an idea of why this is failing?

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  • Pygame program that can get keyboard input with caps

    - by None
    I have a Pygame program that needs text input. The way it does this is to get keyboard input and when a key is pressed it renders that key so it is added to the screen. Essentially it acts like a text field. The problem is, when you hold shift it doesn't do anything. I relize this is because the program ignores shift input and instead writes the text if it's number is under 128. I have thought of setting a variable when shift is pressed then capitalizing if it was true, but string capitalization only woks on letters, not things like numbers or semicolons. Is there maybe a number I can add to the ascii number typed to modify it if shift is pressed, or something else?

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  • Correct way to detect sequence parameter?

    - by noamtm
    I want to write a function that accepts a parameter which can be either a sequence or a single value. The type of value is str, int, etc., but I don't want it to be restricted to a hardcoded list. In other words, I want to know if the parameter X is a sequence or something I have to convert to a sequence to avoid special-casing later. I could do type(X) in (list, tuple) but there may be other sequence types I'm not aware of, and no common base class. -N. Edit: See my "answer" below for why most of these answers don't help me. Maybe you have something better to suggest.

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  • Programatically Determining Bin Path

    - by Andy
    I'm working on a web app called pj and there is a bin file and a src folder. The relative paths before I deploy the app will look something like: pj/bin and pj/src/pj/script.py. However, after deployment, the relative paths will look like: pj_dep/deployed/bin and pj_dep/deployed/lib/python2.6/site-packages/pj/script.py Question: Within script.py, I am trying to find the path of a file in the bin directory. This leads to 2 different behaviors in the dev and deployment environment. If I do os.path.join(os.path.dirname(__file__), 'bin') to try to get the path for the dev environment, I will have a different path for the deployment environment. Is there a more generalized way I can find the bin directory so that I do not need to rely on an if statement to determine how many directories to go up based on the current env? This doesn't seem flexible and might cause other issues later on when the code is moved.

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  • who can help me install osqa on bluehost?

    - by rutger
    hi all, i've tried to install osqa on bluehost but i simply have to admit that my skills and knowledge are not sufficient. I'm not getting anywhere. Is there anyone that would consider helping me install osqa on my bluehost account. I'm willing to offer a fair compensation for it. kind regards, Rutger

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  • Fabfiles With Command Line Arguments

    - by phasetwenty
    Is there a clean way to have your fabfile take command line arguments? I'm writing an installation script for a tool that I want to be able to specify an optional target directory via the command line. I wrote some code to test what would happen if I passed in some command line arguments: # fabfile.py import sys def install(): _get_options() def _get_options(): print repr(sys.argv[1:]) A couple of runs: $ fab install ['install'] Done. $ fab install --electric-boogaloo Usage: fab [options] <command>[:arg1,arg2=val2,host=foo,hosts='h1;h2',...] ... fab: error: no such option: --electric-boogaloo

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  • Subprocess fails to catch the standard output

    - by user343934
    I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "<string>", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in <module> align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO\__init__.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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  • app-engine-patch and "object_detail" view didn't work

    - by Hugh
    Hi(Sorry for my ugly english) When I calling the flowing: http://192.168.62.90:8000/blog/entry/?agphdXR1bW4xOTEychALEgpibG9nX2VudHJ5GCYM will use this: urlpatterns = patterns('', (r'^media/(?P<path>.*)$', 'django.views.static.serve', {'document_root': settings.MEDIA_ROOT, 'show_indexes': True}), (r'^$', list_detail.object_list, entry_info), (r'^entry/(?P<object_id>.*)$', list_detail.object_detail, {'queryset': Entry.all(), 'template_name': 'sample_test_page.html'}), ) and the error is: Generic view must be called with either an object_id or a slug/slug_field. I want to know why this didn't work for me.

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