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  • How to get the best LINPACK result and conquer the Top500?

    - by knweiss
    Given a large Linux HPC cluster with hundreds/thousands of nodes. What are your best practices to get the best possible LINPACK benchmark (HPL) result to submit for the Top500 supercomputer list? To give you an idea what kind of answers I would appreciate here are some sub-questions (with links): How to you tune the parameters (N, NB, P, Q, memory-alignment, etc) for the HPL.dat file (without spending too much time trying each possible permutation - esp with large problem sizes N)? Are there any Top500 submission rules to be aware of? What is allowed, what isn't? Which MPI product, which version? Does it make a difference? Any special host order in your MPI machine file? Do you use CPU pinning? How to you configure your interconnect? Which interconnect? Which BLAS package do you use for which CPU model? (Intel MKL, AMD ACML, GotoBLAS2, etc.) How do you prepare for the big run (on all nodes)? Start with small runs on a subset of nodes and then scale up? Is it really necessary to run LINPACK with a big run on all of the nodes (or is extrapolation allowed)? How do you optimize for the latest Intel/AMD CPUs? Hyperthreading? NUMA? Is it worth it to recompile the software stack or do you use precompiled binaries? Which settings? Which compiler optimizations, which compiler? (What about profile-based compilation?) How to get the best result given only a limited amount of time to do the benchmark run? (You can block a huge cluster forever) How do you prepare the individual nodes (stopping system daemons, freeing memory, etc)? How do you deal with hardware faults (ruining a huge run)? Are there any must-read documents or websites about this topic? E.g. I would love to hear about some background stories of some of the current Top500 systems and how they did their LINPACK benchmark. I deliberately don't want to mention concrete hardware details or discuss hardware recommendations because I don't want to limit the answers. However, feel free to mention hints e.g. for specific CPU models.

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  • High availability for databases (DRBD + GFS)?

    - by EvanAlm
    Does it work to have like an MySQL (or any other relational database) on the GFS (with DRBD) and have multiple nodes reading and writing to it? Is that the "best" way of providing a HA database/application setup if so? Is RHEL (cluster suite) a good way to set up this? (or centos)

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  • rawurl encode problem

    - by pradeep
    hi, i am using rawurlencode($url_variable) while passing to a script.. when i receive the variable in the script ,before passing this variable to mysql ,i was doing mysql_real_escape_string . now the problem is like when there is a variable like $url_variable = "Off-St.Mark's-Road" ...after i do mysql_real_escape_string it become slike Off-St.Mark\\'s-Road . which is creating a problem in mysql query ... how i get over this...rawurlencode is necessary to pass variables to the script and i want to do mysql_real_escape_string to make the data safe...

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  • Cache for large read only database recommendation

    - by paddydub
    I am building site on with Spring, Hibernate and Mysql. The mysql database contains information on coordinates and locations etc, it is never updated only queried. The database contains 15000 rows of coordinates and 48000 rows of coordinate connections. Every time a request is processed, the application needs to read all these coordinates which is taking approx 3-4 seconds. I would like to set up a cache, to allow quick access to the data. I'm researching memcached at the moment, can you please advise if this would be my best option?

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  • Some emails are being delivered, some returned

    - by Tom Broucke
    I have my own VPS where a site is running (control panel: directadmin). When I send mails, some are being delivered (hotmail, gmail, [email protected] ,...), others are not ([email protected]), others are delivered after being greylisted ([email protected]). /var/log/exim/mainlog What could be the cause of this? Is the problem Sender-Side or Receiver-Side? case 1: [email protected] (delivered) 2012-06-20 15:02:03 1ShKXr-0005Sc-7g <= [email protected] U=apache P=local S=1319 T="Password reset" from <[email protected]> for [email protected] 2012-06-20 15:02:03 1ShKXr-0005Sc-7g gmail-smtp-in-v4v6.l.google.com [2a00:1450:8005::1b] Network is unreachable 2012-06-20 15:02:03 1ShKXr-0005Sc-7g => [email protected] F=<[email protected]> R=lookuphost T=remote_smtp S=1355 H=gmail-smtp-in-v4v6.l.google.com [173.194.67.27] X=TLSv1:RC4-SHA:128 C="250 2.0.0 OK 1340196103 cp4si34336466wib.14" 2012-06-20 15:02:03 1ShKXr-0005Sc-7g Completed case 2: [email protected] (not being delivered) 2012-06-21 09:57:14 1ShcGQ-0007No-5H <= [email protected] H=localhost ([91.230.245.141]) [127.0.0.1] P=esmtpa A=login:[email protected] S=740 [email protected] T="hey" from <[email protected]> for [email protected] 2012-06-21 09:57:14 1ShcGQ-0007No-5H ** [email protected] F=<[email protected]> R=virtual_aliases: 2012-06-21 09:57:14 1ShcGQ-0007Nt-7Z <= <> R=1ShcGQ-0007No-5H U=mail P=local S=1546 T="Mail delivery failed: returning message to sender" from <> for [email protected] 2012-06-21 09:57:14 1ShcGQ-0007No-5H Completed 2012-06-21 09:57:14 1ShcGQ-0007Nt-7Z => info <[email protected]> F=<> R=virtual_user T=virtual_localdelivery S=1643 2012-06-21 09:57:14 1ShcGQ-0007Nt-7Z Completed case 3: [email protected] (greylisted) 2012-06-21 15:29:02 1ShhRW-000862-BV <= [email protected] H=localhost ([91.230.245.141]) [127.0.0.1] P=esmtpa A=login:[email protected] S=782 [email protected] T="testmail squirrel" from <[email protected]> for [email protected] 2012-06-21 15:29:02 1ShhRW-000862-BV SMTP error from remote mail server after RCPT TO:<[email protected]>: host mx-cluster-b1.one.com [195.47.247.194]: 450 4.7.1 <[email protected]>: Recipient address rejected: Greylisted for 5 minutes 2012-06-21 15:29:02 1ShhRW-000862-BV == [email protected] R=lookuphost T=remote_smtp defer (-44): SMTP error from remote mail server after RCPT TO:<[email protected]>: host mx-cluster-b2.one.com [195.47.247.195]: 450 4.7.1 <[email protected]>: Recipient address rejected: Greylisted for 5 minutes Notice that the "from" in case1 differs in case2: [email protected] or [email protected]. Thanks for your time!

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  • php.ini not being read with windows 7 installation

    - by Kyle
    I have installed php successfully on a Windows 7 machine but I can not for the life of me get it to read the php.ini file. I have uncommented out the line for php to use mysql and when I run phpinfo(), it never shows up. I have checked to make sure there is only one php.ini file on my entire c:\ drive and it's sitting in my c:\windows folder. has anyone else run into this and know of a solution to get php to read the .ini so that I can enable some extensions (mysql etc)?

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  • Using a Time Zone Conversion When Dynamically Generating Results

    - by John
    Hello, If I understand correctly, the code below converts $row["datesubmitted"] from one timezone to another. I would like to print the converted $row["datesubmitted"] dynamically in an HTML table. Is there a way that I can apply the conversion below for each row that is pulled from MySQL? I assume that I can't just plug $row["dt"] into the code since there is no field called "dt" in the MySQL that I am using. Thanks in advance, John $dt = new DateTime($row["datesubmitted"], $tzFrom); $dt->setTimezone($tzTo);

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  • How do you unpack gems using jruby on rails 2.3?

    - by James Moore
    I'm trying to unpack all the system gems to end up with a standalone Rails directory including all the rails gems and all the system gems. I'm starting with a bare rails setup; just did a jruby -S rails and a 'generate jdbc'. I then add a config.gem 'jdbc-mysql' to environment.rb and do the jruby -S rake gems:unpack:dependencies. After unpacking, if I do a rake I get: no such file to load -- jdbc-mysql Is there something else you need to do to get the jdbc gem unpacked? I'm using jruby 1.4.0 (and moving to 1.5 is on my todo list) and rails 2.3.8.

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  • Unable to uninstall SQL 2008 Instance(s)

    - by ichoudhury
    Windows 2008 R2 High Availability Cluster and we were just going through the first phase of configuration. Somebody accidentally loaded the instance incorrectly, so I was hopping to uninstall and reinstall. But when I approach the uninstall process, it fails with the following msg: Object reference not set to an instance of an object SQL instance not yet clustered (FYI) Any idea?

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  • Does changing the default HDFS replication factor from 3 affect mapper performance?

    - by liamf
    Have a HDFS/Hadoop cluster setup and am looking into tuning. I wonder if changing the default HDFS replication factor (default:3) to something bigger will improve mapper performance, at the obvious expense of increasing disk storage used? My reasoning being that if the data is already replicated to more nodes, mapper jobs can be run on more nodes in parallel without any data streaming/copying? Anyone got any opinions?

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  • High CPU usage - symptoms moving from server to server after bouncing

    - by grt3kl
    First off, I apologize if I didn't include enough information to properly troubleshoot this issue. This sort of thing isn't my specialty, so it is a learning process. If there's something I need to provide, please let me know and I'll be happy to do what I can. The images associated with my question are at the bottom of this post. We are dealing with a clustered environment of four WebLogic 9.2 Java application servers. The cluster utilizes a round-robin load algorithm. Other details include: Java(TM) 2 Runtime Environment, Standard Edition (build 1.5.0_12-b04) BEA JRockit(R) (build R27.4.0-90_CR352234-91983-1.5.0_12-20071115-1605-linux-x86_64, compiled mode) Basically, I started looking at the servers' performance because our customers are seeing lots of lag at various times of the day. Our servers should easily handle the loads they are given, so it's not clear what's going on. Using HP Performance Manager, I generated some graphs that indicate that the CPU usage is completely out of whack. It seems that, at any given point, one or more of the servers has a CPU utilization of over 50%. I know this isn't particularly high, but I would say it is a red flag based on the CPU utilization of the other servers in the WebLogic cluster. Interesting things to note: The high CPU utilization was occurring only on server02 for several weeks. The server crashed (extremely rare; we are not sure if it's related to this) and upon starting it back up, the CPU utilization was normal on all 4 servers. We restarted all 4 managed servers and the application server (on server01) yesterday, on 2/28. As you can see, server03 and server04 picked up the behavior that was seen on server02 before. The CPU utilization is a Java process owned by the application user (appown). The number of transactions is consistent across all servers. It doesn't seem like any one server is actually handling more than another. If anyone has any ideas or can at least point me in the right direction, that would be great. Again, please let me know if there is any additional information I should post. Thanks!

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  • Installed Redmine on Ubuntu; But i have no clue how to use it to create Users/Projects/Roles/Tracking etc.....

    - by Ronnie
    Hi all, Im new to Redmine. I installed redmine(with mysql) on Ubuntu 10.04. The following were the installation steps i did: $ sudo apt-get install redmine redmine-mysql subversion $ ln -s /usr/share/redmine/public /var/www/redmine In /etc/apache2/mods-available/passenger.conf, added a PassengerDefaultUser www-data directive. Configured the /var/www/redmine location in /etc/apache2/sites-available/default: RailsBaseURI /redmine PassengerResolveSymlinksInDocumentRoot on $ sudo a2enmod passenger I then restarted the apache2 server. Thats it. Now i typed http://localhost/redmine/ in my browser and accessed my redmine instance. So from here on, how do i create different users with with different privileges, create different projects, also update the issues and other project management related stuff..... I know this sounds silly, but i couldnt find anythin to proceed....

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  • How to navigate to another html page?

    - by newbie
    In my application there's a usual login page sending username and password to the server script, where it needs to be authenticated, and in case of an authentic user, the server should redirect to a page student.html. This is my code var ports = 3000; var portt = 3001; var express = require('express'); var student = require('express')(); var teacher = require('express')(); var server_s = require('http').createServer(student); var server_t = require('http').createServer(teacher); var ios = require('socket.io').listen(server_s); var iot = require('socket.io').listen(server_t); var path = require('path'); server_s.listen(ports); server_t.listen(portt); student.use(express.static(path.join(__dirname, 'public'))); student.get('/', function(req,res){ res.sendfile(__dirname + '/login.html'); }); teacher.use(express.static(path.join(__dirname, 'public'))); teacher.get('/', function(req,res){ res.sendfile(__dirname + '/mytry.html'); }); ios.sockets.on('connection', function(socket){ var username, password; socket.on('check',function(data){ username = data[0]; password = data[1]; //************* Database connection and query ************* var mysql = require('mysql'); var connection = mysql.createConnection({ host : 'localhost', user : 'user', password: '*******', database: 'my_db' }); connection.connect(); var qstring = 'SELECT s_id FROM login_student WHERE username='+username+'AND password='+password; connection.query(qstring, function(err, rows, fields) { if (err) { console.log('ERROR: ' + err); socket.emit('login_failure','DB error'); return; } console.log('The solution is: ', rows[0].solution); if (rows>0) //***** Here i want redirection to another page ****** else socket.emit('login_failure','Invalid Username or password'); }); connection.end(); }); }); iot.sockets.on('connection', function(socket){ ; }); }); Can anyone suggest what should I do?

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  • Switch User in RedHat like XP

    - by rd42
    In our cluster, RedHat4 & 5 machines, if someone locks the computer and walks away no body can use it. Is there a feature in RedHat5, Gnome, KDE etc that would allow for the option of switching users at the lock screen, so more than one person can be logged in? Thanks, rd42

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  • design pattern tools to use?

    - by ajsie
    i have noticed that every area has some tools you can use to make things easier. eg. css = dreamweaver doctrine/propel = orm designer // you dont have to hardcore code schemas manually and remembering all the syntax/variables mysql = mysql workbench // the same etc. in this way you get aided and dont have to type things the hard way, and can learn the structure, but then use GUI tools to help you develop faster. now i'm learning design patterns (singleton, factory, command, memento etc) and im wondering if there are some kind of tools you can use that will help you develop faster. i dont know exactly what tools i'm trying to find, just helping me when coding with design patterns (schema drawings? references?) are there any?

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  • Group your tabs feature Firefox: Automatically sort by domain?

    - by Dan
    I'm using Firefox 8.0 and am enjoying the Group your tabs feature: But I'm not always good at keeping it organized. I'm trying to find a way to automatically put certain domains in certain groups. Probably through a plug-in? All the tab related plug-ins just help cluster your tabs together and don't actually work with the "Group your tabs" feature (which is why I posted the picture, to avoid ambiguity, since grouping tabs can refer to a lot of things).

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  • Mobile App integrating with Web portal

    - by Shine
    I'm planning to develop a city info site. The web pages will display contents from a constantly updating MySQL database- most probably using a CMS. I am planning to share the same database for a Mobile app related to this. In the pages there are options for using geolocation, rate and comment for the user. I think, this mobile app should work while it's offline too. So how should i deal with data for mobile? Should i use a connection between MySQL and IndexedDB? (I'm not quite sure about this part). Appreciating your time & help.

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  • Multicast Prblem in Linux Red Hat server

    - by Uma Kant Verma
    I am facing a very strange behavior on my server. I am using a linux cluster.On fail over server my broadcast application halts after 5 minutes.But it is working fine on Primary server. My application process listening on port and send broadcast.It is working 5 mins after that it wait on socket for further packets but it didn't receive anything. Same process is working fine at Primary server. Plz help me.

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  • Quick way to do data lookup in PHP

    - by Ghostrider
    I have a data table with 600,000 records that is around 25 megabytes large. It is indexed by a 4 byte key. Is there a way to find a row in such dataset quickly with PHP without resorting to MySQL? The website in question is mostly static with minor PHP code and no database dependencies and therefore fast. I would like to add this data without having to use MySQL if possible. In C++ I would memory map the file and do a binary search in it. Is there a way to do something similar in PHP?

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  • One regular expression to match parts in various positions

    - by richsage
    Hi all, I'm trying to parse a DSN (from a Symfony application) using regular expressions, in order to link with a secondary application, but using the same database. The DSN I currently have is: mysql:dbname=my_db_name;host=localhost with a regex of: /^(\w+):(dbname=(\w+))?;?(host=(\w+))?/ (using preg_match()). This matches OK, but fails in my test environment because the DSN elements are switched around, thus: mysql:host=localhost;dbname=my_testdb_name I could just switch them round, yes :-) but I'm sure that extraction of the host and dbname parts from both DSNs is possible with a single regular expression, and I'd like to be able to enhance my knowledge at the same time ;-) Is there a way I can do this?

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  • Rewrite this function as DB query?

    - by aLk
    I'm cleaning up my code, should i change the following function to a MySQL query? If so what would be a nice MySQL function to achieve this functionality? public ArrayList getNewTitles(ArrayList candidateTitles, ArrayList existingTitles) { ArrayList newTitles = new ArrayList(); Movie movie = new Movie(); boolean isNew = true; for(int i=0; i<candidateTitles.size(); i++) { for(int j=0; j<existingTitles.size(); j++) { movie = (Movie)existingTitles.get(j); if(((String)candidateTitles.get(i)).equals(movie.getRawTitle())) { isNew = false; } } if(isNew == true) { System.out.println("newTitle for crawling: " + (String)candidateTitles.get(i)); newTitles.add((String)candidateTitles.get(i)); } else { System.out.println("candidate binned: " + (String)candidateTitles.get(i)); } isNew = true; } return newTitles; }

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