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  • svn over HTTP proxy

    - by small_jam
    Hi all. I'm on laptop (Ubuntu) with a network that use HTTP proxy (only http connections allowed). When I use svn up for url like 'http://.....' everything is cool (google chrome repository works perfect), but right now I need to svn up from server with 'svn://....' and I see connection refused. I've set proxy configuration in /etc/subversion/servers but it doesn't help. Anyone have opinion/solution? Thanks. Anton.

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  • Where has my parallel port gone? ioperm(888,1,1) returns -1.

    - by marcusw
    I have an old Dell Dimension 8200 running Gentoo which I use solely to control various things using the parallel port. After shutting it down a few weeks ago, I started it up again today and tried to access the parallel port like I usually do. Unfortunately, my code bombed out when it tried to call ioperm(888,1,1) to grab the parallel port which returned an error code of -1. There have been no changes to the system be it hardware or software, no updates, no tweaking, no dropping the case, no over-amping the data pins, nothing. The port and the software have been working fine for months with no changes, and were working fine when I shut it down last. Running my code with root privileges changes nothing. What is breaking this and how can I fix it?

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  • what is the command in terminal to extract text from a file

    - by PRINCE EMMIT
    hey can any one tell me to write the command in terminal to extract text from a html file using tags like,,,,...etc.... -i am thinking of putting these tags in a text file... -then i wanna match the tags with the help of command of terminal... -then i have to put that into a dump file(text)... because...i wanna change the text with language preference.... i tried with awk script and egrep too....but i got poor result...

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  • How to define an alias in fish shell?

    - by armandino
    I would like to define some aliases in fish. Apparently it should be possible to define them in ~/.config/fish/functions but they don't get auto loaded when I restart the shell. Any ideas? p.s. if anyone is using or has used fish in the past I'd be interested to hear your comments as to whether it offers anything that bash does not.

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  • Can't import my module when start my twisted application under root

    - by kepkin
    Here is absolutely minimal application so you could try to reproduce it on your machine. Having two files for example in /home/aln/tmp/tw_test: server.tac MyLib.py MyLib.py class Solver(object): def solve(self): """ do extremely complex stuff here """ print "Hello from solve" server.tac #!/usr/bin/python import MyLib from twisted.application import internet, service from twisted.internet import protocol, reactor, defer, utils, threads from twisted.protocols import basic class MyProtocol(basic.LineReceiver): def lineReceived(self, line): if line=="new job": self.transport.write("started a job" + '\r\n') self.factory.run_defered() class MyFactory(protocol.ServerFactory, MyLib.Solver): protocol = MyProtocol def run_defered_helper(self): self.solve() def run_defered(self): d = threads.deferToThread(self.run_defered_helper) application = service.Application('MyApplication') factory = MyFactory() internet.TCPServer(1079, factory).setServiceParent(service.IServiceCollection(application)) Everything works fine when I start it under non-root user. aln@aln-laptop:tw_test$ twistd -ny server.tac 2010-03-03 22:42:55+0300 [-] Log opened. 2010-03-03 22:42:55+0300 [-] twistd 8.2.0 (/usr/bin/python 2.6.4) starting up. 2010-03-03 22:42:55+0300 [-] reactor class: twisted.internet.selectreactor.SelectReactor. 2010-03-03 22:42:55+0300 [-] <class 'MyFactory'> starting on 1079 2010-03-03 22:42:55+0300 [-] Starting factory <MyFactory object at 0x2d5ea50> 2010-03-03 22:42:59+0300 [MyProtocol,0,127.0.0.1] Hello from solve ^C2010-03-03 22:43:01+0300 [-] Received SIGINT, shutting down. 2010-03-03 22:43:01+0300 [-] (Port 1079 Closed) 2010-03-03 22:43:01+0300 [-] Stopping factory <MyFactory object at 0x2d5ea50> 2010-03-03 22:43:01+0300 [-] Main loop terminated. 2010-03-03 22:43:02+0300 [-] Server Shut Down. But if try to start it under root (which is going to happen in my real application) I receive the following exception: aln@aln-laptop:tw_test$ sudo twistd -ny server.tac [sudo] password for aln: Traceback (most recent call last): File "/usr/lib/python2.6/dist-packages/twisted/application/app.py", line 694, in run runApp(config) File "/usr/lib/python2.6/dist-packages/twisted/scripts/twistd.py", line 23, in runApp _SomeApplicationRunner(config).run() File "/usr/lib/python2.6/dist-packages/twisted/application/app.py", line 411, in run self.application = self.createOrGetApplication() File "/usr/lib/python2.6/dist-packages/twisted/application/app.py", line 494, in createOrGetApplication application = getApplication(self.config, passphrase) --- <exception caught here> --- File "/usr/lib/python2.6/dist-packages/twisted/application/app.py", line 505, in getApplication application = service.loadApplication(filename, style, passphrase) File "/usr/lib/python2.6/dist-packages/twisted/application/service.py", line 390, in loadApplication application = sob.loadValueFromFile(filename, 'application', passphrase) File "/usr/lib/python2.6/dist-packages/twisted/persisted/sob.py", line 215, in loadValueFromFile exec fileObj in d, d File "server.tac", line 2, in <module> import MyLib exceptions.ImportError: No module named MyLib Failed to load application: No module named MyLib If I try to load MyLib module in the python intepreter under root, it works fine: aln@aln-laptop:tw_test$ sudo python Python 2.6.4 (r264:75706, Dec 7 2009, 18:43:55) [GCC 4.4.1] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> import MyLib >>> import sys >>> print(sys.path) ['', '/usr/lib/python2.6', '/usr/lib/python2.6/plat-linux2', '/usr/lib/python2.6/lib-tk', '/usr/lib/python2.6/lib-old', '/usr/lib/python2.6/lib-dynload', '/usr/lib/python2.6/dist-packages', '/usr/lib/python2.6/dist-packages/PIL', '/usr/lib/python2.6/dist-packages/gst-0.10', '/usr/lib/pymodules/python2.6', '/usr/lib/python2.6/dist-packages/gtk-2.0', '/usr/lib/pymodules/python2.6/gtk-2.0', '/usr/local/lib/python2.6/dist-packages'] >>> sys.path is absolutely the same for aln user. I tried sudo -E too. Any suggestions?

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  • sed to insert on first match only

    - by SS.
    UPDATED: Using sed, how can I insert (NOT SUBSTITUTE) a new line on only the first match of keyword for each file. Currently I have the following but this inserts for every line containing Matched Keyword and I want it to only insert the New Inserted Line for only the first match found in the file: sed -ie '/Matched Keyword/ i\New Inserted Line' *.* For example: Myfile.txt: Line 1 Line 2 Line 3 This line contains the Matched Keyword and other stuff Line 4 This line contains the Matched Keyword and other stuff Line 6 changed to: Line 1 Line 2 Line 3 New Inserted Line This line contains the Matched Keyword and other stuff Line 4 This line contains the Matched Keyword and other stuff Line 6

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  • CPU Affinity Masks (Putting Threads on different CPUs)

    - by hahuang65
    I have 4 threads, and I am trying to set thread 1 to run on CPU 1, thread 2 on CPU 2, etc. However, when I run my code below, the affinity masks are returning the correct values, but when I do a sched_getcpu() on the threads, they all return that they are running on CPU 4. Anybody know what my problem here is? Thanks in advance! #define _GNU_SOURCE #include <stdio.h> #include <pthread.h> #include <stdlib.h> #include <sched.h> #include <errno.h> void *pthread_Message(char *message) { printf("%s is running on CPU %d\n", message, sched_getcpu()); } int main() { pthread_t thread1, thread2, thread3, thread4; pthread_t threadArray[4]; cpu_set_t cpu1, cpu2, cpu3, cpu4; char *thread1Msg = "Thread 1"; char *thread2Msg = "Thread 2"; char *thread3Msg = "Thread 3"; char *thread4Msg = "Thread 4"; int thread1Create, thread2Create, thread3Create, thread4Create, i, temp; CPU_ZERO(&cpu1); CPU_SET(1, &cpu1); temp = pthread_setaffinity_np(thread1, sizeof(cpu_set_t), &cpu1); printf("Set returned by pthread_getaffinity_np() contained:\n"); for (i = 0; i < CPU_SETSIZE; i++) if (CPU_ISSET(i, &cpu1)) printf("CPU1: CPU %d\n", i); CPU_ZERO(&cpu2); CPU_SET(2, &cpu2); temp = pthread_setaffinity_np(thread2, sizeof(cpu_set_t), &cpu2); for (i = 0; i < CPU_SETSIZE; i++) if (CPU_ISSET(i, &cpu2)) printf("CPU2: CPU %d\n", i); CPU_ZERO(&cpu3); CPU_SET(3, &cpu3); temp = pthread_setaffinity_np(thread3, sizeof(cpu_set_t), &cpu3); for (i = 0; i < CPU_SETSIZE; i++) if (CPU_ISSET(i, &cpu3)) printf("CPU3: CPU %d\n", i); CPU_ZERO(&cpu4); CPU_SET(4, &cpu4); temp = pthread_setaffinity_np(thread4, sizeof(cpu_set_t), &cpu4); for (i = 0; i < CPU_SETSIZE; i++) if (CPU_ISSET(i, &cpu4)) printf("CPU4: CPU %d\n", i); thread1Create = pthread_create(&thread1, NULL, (void *)pthread_Message, thread1Msg); thread2Create = pthread_create(&thread2, NULL, (void *)pthread_Message, thread2Msg); thread3Create = pthread_create(&thread3, NULL, (void *)pthread_Message, thread3Msg); thread4Create = pthread_create(&thread4, NULL, (void *)pthread_Message, thread4Msg); pthread_join(thread1, NULL); pthread_join(thread2, NULL); pthread_join(thread3, NULL); pthread_join(thread4, NULL); return 0; }

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  • How to declare a(n) vector/array of reducer objects in Cilk++?

    - by Jin
    Hi All, I had a problem when I am using Cilk++, an extension to C++ for parallel computing. I found that I can't declare a vector of reducer objects: typedef cilk::reducer_opadd<int> T_reducer; vector<T_reducer> bitmiss_vec; for (int i = 0; i < 24; ++i) { T_reducer r; bitmiss_vec.push_back(r); } However, when I compile the code with Cilk++, it complains at the push_back() line: cilk++ geneAttack.cilk -O1 -g -lcilkutil -o geneAttack /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In member function ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Tp*, const _Tp&) [with _Tp = cilk::reducer_opadd<int>]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:601: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:229: error: ‘cilk::reducer_opadd<Type>::reducer_opadd(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/ext/new_allocator.h:107: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename std::_Vector_base<_Tp, _Alloc>::_Tp_alloc_type::pointer, std::vector<_Tp, _Alloc> >, const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:229: error: ‘cilk::reducer_opadd<Type>::reducer_opadd(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:252: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:230: error: ‘cilk::reducer_opadd<Type>& cilk::reducer_opadd<Type>::operator=(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:256: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In static member function ‘static _BI2 std::__copy_backward<_BoolType, std::random_access_iterator_tag>::__copy_b(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*, bool _BoolType = false]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:465: instantiated from ‘_BI2 std::__copy_backward_aux(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:474: instantiated from ‘static _BI2 std::__copy_backward_normal<<anonymous>, <anonymous> >::__copy_b_n(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*, bool <anonymous> = false, bool <anonymous> = false]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:540: instantiated from ‘_BI2 std::copy_backward(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:253: instantiated from ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename std::_Vector_base<_Tp, _Alloc>::_Tp_alloc_type::pointer, std::vector<_Tp, _Alloc> >, const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:230: error: ‘cilk::reducer_opadd<Type>& cilk::reducer_opadd<Type>::operator=(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:433: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In function ‘void std::_Construct(_T1*, const _T2&) [with _T1 = cilk::reducer_opadd<int>, _T2 = cilk::reducer_opadd<int>]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_uninitialized.h:87: instantiated from ‘_ForwardIterator std::__uninitialized_copy_aux(_InputIterator, _InputIterator, _ForwardIterator, std::__false_type) [with _InputIterator = cilk::reducer_opadd<int>*, _ForwardIterator = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_uninitialized.h:114: instantiated from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = cilk::reducer_opadd<int>*, _ForwardIterator = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_uninitialized.h:254: instantiated from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>) [with _InputIterator = cilk::reducer_opadd<int>*, _ForwardIterator = cilk::reducer_opadd<int>*, _Tp = cilk::reducer_opadd<int>]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:275: instantiated from ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename std::_Vector_base<_Tp, _Alloc>::_Tp_alloc_type::pointer, std::vector<_Tp, _Alloc> >, const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:229: error: ‘cilk::reducer_opadd<Type>::reducer_opadd(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_construct.h:81: error: within this context make: *** [geneAttack] Error 1 jinchen@galactica:~/workspace/biometrics/genAttack$ make cilk++ geneAttack.cilk -O1 -g -lcilkutil -o geneAttack geneAttack.cilk: In function ‘int cilk cilk_main(int, char**)’: geneAttack.cilk:670: error: expected primary-expression before ‘,’ token geneAttack.cilk:670: error: expected primary-expression before ‘}’ token geneAttack.cilk:674: error: ‘bitmiss_vec’ was not declared in this scope make: *** [geneAttack] Error 1 The Cilk++ manule says it supports array/vector of reducers, although there are performance issues to consider: "If you create a large number of reducers (for example, an array or vector of reducers) you must be aware that there is an overhead at steal and reduce that is proportional to the number of reducers in the program. " Anyone knows what is going on? How should I declare/use vector of reducers? Thank you

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  • Compiling x264 with mp4 support problem

    - by johnas
    I'm trying to compile x264 with mp4 output support. I download the latest version from their git by typing git clone git://git.videolan.org/x264.git When I run ./configure it configures and I'm able to make it. But when i try to configure it with ./configure --enable-mp4-output and then try to make it, it returns a strange error, indicating that there is a compilation error. The error message looks like: ... Lots of similar errors ... output/mp4.c:297: warning: implicit declaration of function ‘gf_isom_add_sample’ output/mp4.c:297: error: ‘mp4_hnd_t’ has no member named ‘p_file’ output/mp4.c:297: error: ‘mp4_hnd_t’ has no member named ‘i_track’ output/mp4.c:297: error: ‘mp4_hnd_t’ has no member named ‘i_descidx’ output/mp4.c:297: error: ‘mp4_hnd_t’ has no member named ‘p_sample’ output/mp4.c:299: error: ‘mp4_hnd_t’ has no member named ‘p_sample’ output/mp4.c:300: error: ‘mp4_hnd_t’ has no member named ‘i_numframe’ I've tried different releases. I've installed gpac, ffmpeg, and tried numerous tips from the net. But still can't get it to work. The reason I want it with mp4 output is because I want to use ffmpeg to create mp4 files encoded with x264. I'm running Ubuntu Server 9.10 32 bits.

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  • How to define GPS module in Android?

    - by Osama Gamal
    I'm porting android to Devkit8000 which is a BeagleBoard clone. I have a GPS module connected on /dev/ttyS0. I could successfully get NMEA output when writing "cat /dev/ttyS0" in the terminal emulator. I want to know how to let android know that there is a GPS module on /dev/ttyS0 and it is outputting NMEA standard? To be able to use the android.location class with it! Is there something to edit in the android's source? adding driver for example, writing a code with android-ndk or what?

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  • Bash script, read values from stdin pipe

    - by gmatt
    I'm trying to get bash to process data from stdin that gets piped it, but no luck, what I mean is none of the following work: echo "hello world" | test=($(< /dev/stdin)); echo test=$test test= echo "hello world" | read test; echo test=$test test= echo "hello world" | test=`cat`; echo test=$test test= where I want the output to be test=hello world. Note I've tried putting "" quotes around "$test" that doesn't work either.

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  • Replacing Part of Text Using Sed

    - by neversaint
    I have the following text file Eif2ak1.aSep07 Eif2ak1.aSep07 LOC100042862.aSep07-unspliced NADH5_C.0.aSep07-unspliced LOC100042862.aSep07-unspliced NADH5_C.0.aSep07-unspliced What I want to do is to remove all the text starting from period (.) to the end. But why this command doesn't do it? sed 's/\.*//g' myfile.txt What's the right way to do it?

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  • jRuby and Matz's Ruby on the same machine?

    - by erhard
    Is it possible to run jRuby and native ruby on the same machine? For example installing rake or gem under both it find's Matz Ruby extensions /usr/bin/gem or /usr/bin/rake The MRI gems and jruby gems are mixed up. Is there any experience in that constellation ? Thanks erhard

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  • Converting FASTQ to FASTA with SED/AWK

    - by neversaint
    I have a data in that always comes in block of four in the following format (called FASTQ): @SRR018006.2016 GA2:6:1:20:650 length=36 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGN +SRR018006.2016 GA2:6:1:20:650 length=36 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!+! @SRR018006.19405469 GA2:6:100:1793:611 length=36 ACCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC +SRR018006.19405469 GA2:6:100:1793:611 length=36 7);;).;);;/;*.2>/@@7;@77<..;)58)5/>/ Is there a simple sed/awk/bash way to convert them into this format (called FASTA): >SRR018006.2016 GA2:6:1:20:650 length=36 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGN >SRR018006.19405469 GA2:6:100:1793:611 length=36 ACCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC In principle we want to extract the first two lines in each block-of-4 and replace @ with >.

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  • Total stack sizes of threads in one process

    - by David
    I use pthreads_attr_getthreadsizes() to get default stack size of one thread, 8MB on my machine. But when I create 8 threads and allocate a very large stack size to them, say hundreds of MB, the program crash. So, I guess, shall ("Number of threads" x "stack size of per thread") shall less than a value(virtual memory size)?

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  • running a parallel port controlling program through php.

    - by prateek
    I have a program that is interacting with hardware via parallel port programming. i had compiled it and using its object file to interact with the hardware (a simple led). when i execute it directly on the shell it serves the purpose of glowing the LED but when i execute it using shell_exec() in php the command is executed but unable to interact with the hardware. i am totally confused.. .

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  • Possible to recover mysql root pass with sudo server access?

    - by jonathonmorgan
    I've inherited development for a website on vps hosting, and have login info for a user with sudo privileges, but don't have the password for the mysql root user. After digging around a little, it looks like the only way to fix this is to stop mysql (something like this: http://waoewaoe.wordpress.com/2010/02/03/recover-reset-mysql-root-password/). But because the website it's serving is currently in production, I'm hoping you guys can enlighten me to any potential consequences (or let me know if there's typically a file where the password would be accessible). a) during the time mysql is stopped, information in the database won't be accessible, right -- even by other users? b) will resetting the root password have any impact on other users after mysql has restarted? Will their username/passwords still be valid? The current application is using an account with limited privileges to read/write to the database, and while 5min downtime in the middle of the night would probably go unnoticed, half a day while I tie up loose ends/figure out what I screwed up will land in me hot water. Thanks in advance for your help!

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  • vsftpd status stop/waiting Ubuntu

    - by Majin Vegeta
    I'm trying to configure ftp over amazon EC2 instance, I've installed vsftpd and did the steps of adding user and modifying the vsftpd.conf file, but I'm getting my service status as ubuntu@ip-10-38-106-212:~$ sudo service vsftpd status vsftpd stop/waiting I've tried to reinstall vsftpd but still getting the same, I've also added the port 20 and 21 in my security group policy to skip the firewall. Can anyone tell me how to check whats wrong with this vsftpd, why its stopped and not coming into running state. Thank u

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  • Serial port : Read data problem, not reading complete data

    - by Anuj Mehta
    Hi I have an application where I am sending data via serial port from PC1 (Java App) and reading that data in PC2 (C++ App). The problem that I am facing is that my PC2 (C++ App) is not able to read complete data sent by PC1 i.e. from my PC1 I am sending 190 bytes but PC2 is able to read close to 140 bytes though I am trying to read in a loop. Below is code snippet of my C++ App Open the connection to serial port serialfd = open( serialPortName.c_str(), O_RDWR | O_NOCTTY | O_NDELAY); if (serialfd == -1) { /* * Could not open the port. */ TRACE << "Unable to open port: " << serialPortName << endl; } else { TRACE << "Connected to serial port: " << serialPortName << endl; fcntl(serialfd, F_SETFL, 0); } Configure the Serial Port parameters struct termios options; /* * Get the current options for the port... */ tcgetattr(serialfd, &options); /* * Set the baud rates to 9600... */ cfsetispeed(&options, B38400); cfsetospeed(&options, B38400); /* * 8N1 * Data bits - 8 * Parity - None * Stop bits - 1 */ options.c_cflag &= ~PARENB; options.c_cflag &= ~CSTOPB; options.c_cflag &= ~CSIZE; options.c_cflag |= CS8; /* * Enable hardware flow control */ options.c_cflag |= CRTSCTS; /* * Enable the receiver and set local mode... */ options.c_cflag |= (CLOCAL | CREAD); // Flush the earlier data tcflush(serialfd, TCIFLUSH); /* * Set the new options for the port... */ tcsetattr(serialfd, TCSANOW, &options); Now I am reading data const int MAXDATASIZE = 512; std::vector<char> m_vRequestBuf; char buffer[MAXDATASIZE]; int totalBytes = 0; fcntl(serialfd, F_SETFL, FNDELAY); while(1) { bytesRead = read(serialfd, &buffer, MAXDATASIZE); if(bytesRead == -1) { //Sleep for some time and read again usleep(900000); } else { totalBytes += bytesRead; //Add data read to vector for(int i =0; i < bytesRead; i++) { m_vRequestBuf.push_back(buffer[i]); } int newBytesRead = 0; //Now keep trying to read more data while(newBytesRead != -1) { //clear contents of buffer memset((void*)&buffer, 0, sizeof(char) * MAXDATASIZE); newBytesRead = read(serialfd, &buffer, MAXDATASIZE); totalBytes += newBytesRead; for(int j = 0; j < newBytesRead; j++) { m_vRequestBuf.push_back(buffer[j]); } }//inner while break; } //while

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  • Serial port determinism

    - by Matt Green
    This seems like a simple question, but it is difficult to search for. I need to interface with a device over the serial port. In the event my program (or another) does not finish writing a command to the device, how do I ensure the next run of the program can successfully send a command? Example: The foo program runs and begins writing "A_VERY_LONG_COMMAND" The user terminates the program, but the program has only written, "A_VERY" The user runs the program again, and the command is resent. Except, the device sees "A_VERYA_VERY_LONG_COMMAND," which isn't what we want. Is there any way to make this more deterministic? Serial port programming feels very out-of-control due to issues like this.

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  • How can i install sun java to Fedora 8

    - by Tushar Ahirrao
    Hi I want to install java on my fedora 8 server but come to the step 9 that is mention in http://fedorasolved.org/browser-solutions/java-i386 but at the step 10 when i enter the command ln -s /opt/jre1.6.0_18/plugin/i386/ns7/libjavaplugin_oji.so /usr/lib/mozilla/plugins/libjavaplugin_oji.so it gives following error ln -s /opt/jre1.6.0_18/plugin/i386/ns7/libjavaplugin_oji.so /usr/lib/mozilla/plugins/libjavaplugin_oji.so ln: creating symbolic link `/usr/lib/mozilla/plugins/libjavaplugin_oji.so': No such file or directory can you help me please?

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  • Pointer initialization doubt

    - by Jestin Joy
    We could initialize a character pointer like this in C. char *c="test"; Where c points to the first character(t). But when I gave code like below. It gives segmentation fault. #include<stdio.h> #include<stdlib.h> main() { int *i=0; printf("%d",*i); } Also when I give #include<stdio.h> #include<stdlib.h> main() { int *i; i=(int *)malloc(2); printf("%d",*i); } It worked(gave output 0). When I gave malloc(0), it worked(gave output 0). Please tell what is happening

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