Search Results

Search found 26263 results on 1051 pages for 'linux guest'.

Page 517/1051 | < Previous Page | 513 514 515 516 517 518 519 520 521 522 523 524  | Next Page >

  • Converting FASTQ to FASTA with SED/AWK

    - by neversaint
    I have a data in that always comes in block of four in the following format (called FASTQ): @SRR018006.2016 GA2:6:1:20:650 length=36 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGN +SRR018006.2016 GA2:6:1:20:650 length=36 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!+! @SRR018006.19405469 GA2:6:100:1793:611 length=36 ACCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC +SRR018006.19405469 GA2:6:100:1793:611 length=36 7);;).;);;/;*.2>/@@7;@77<..;)58)5/>/ Is there a simple sed/awk/bash way to convert them into this format (called FASTA): >SRR018006.2016 GA2:6:1:20:650 length=36 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGN >SRR018006.19405469 GA2:6:100:1793:611 length=36 ACCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC In principle we want to extract the first two lines in each block-of-4 and replace @ with >.

    Read the article

  • Embedded systems code with good unit tests?

    - by rmk
    I am looking at approaches to Unit Test embedded systems code written in C. At the same time, I am also looking for a good UT framework that I can use. The framework should have a reasonably small number of dependencies. Any great Open-source products that have good UTs?

    Read the article

  • How to define an alias in fish shell?

    - by armandino
    I would like to define some aliases in fish. Apparently it should be possible to define them in ~/.config/fish/functions but they don't get auto loaded when I restart the shell. Any ideas? p.s. if anyone is using or has used fish in the past I'd be interested to hear your comments as to whether it offers anything that bash does not.

    Read the article

  • Open a new tab in gnome-terminal using command line.

    - by Vikrant Chaudhary
    Hi, When I write gnome-terminal --tab at the terminal, I expect it to open a new tab in the same terminal window. But it opens a new window instead. I found out that its intention is to open a new tab in a new window, i.e., if I write gnome-terminal --tab --tab it will open a new window with two tabs. So, the question is, how can I open a new tab in the current window using a command in gnome-terminal? I'm using Ubuntu 9.04 x64.

    Read the article

  • Replacing Part of Text Using Sed

    - by neversaint
    I have the following text file Eif2ak1.aSep07 Eif2ak1.aSep07 LOC100042862.aSep07-unspliced NADH5_C.0.aSep07-unspliced LOC100042862.aSep07-unspliced NADH5_C.0.aSep07-unspliced What I want to do is to remove all the text starting from period (.) to the end. But why this command doesn't do it? sed 's/\.*//g' myfile.txt What's the right way to do it?

    Read the article

  • Archlinux auto-start after I shutdown my computer

    - by madper
    every one. I'm in a big trouble. My computer (HP ProBook 4230s) has two OS----Archlinux and Win 7. When I use Archlinux, after halt my computer, it will start up after a while without press power. And there is an other thing. My computer's clock will be wrong. Many times I change it in bios, but it wrong again. If I turn off the computer from Win 7, it will never start up untill pressing power bottom. And the clock will be right. I also used ubuntu\debian\mageia, and both of them are fine with my notebook. Is there some configure is wrong with my ArchLinux?

    Read the article

  • Uninstall Git completely on Ubuntu?

    - by Millisami
    I installed Git on Ubuntu Lucid (latest) manually as following. cd ~/tmp wget http://kernel.org/pub/software/scm/git/git-1.7.0.6.tar.gz tar -xzvf git-1.7.0.6.tar.gz cd git-1.7.0.6.tar.gz ./configure sudo make sudo make install Now, how can I completely uninstall it?

    Read the article

  • Minix3 on Vmware

    - by mohit
    Hi, I install minix3 on vmware using installation CD i make using .iso image which is available @minix3 I make 2GB Harddisk, 512MB RAM on VMware, and installed step-by-step. It got installed and working fine. But i wana install 'packman' which is X window system. I'm not able to install it. It asks for installation CD, its still there and its detected also, but i couldn't proceed. Have any1 tried installing 'packman' i.e X window system on minix3. Please guide me. :)

    Read the article

  • Bash script, read values from stdin pipe

    - by gmatt
    I'm trying to get bash to process data from stdin that gets piped it, but no luck, what I mean is none of the following work: echo "hello world" | test=($(< /dev/stdin)); echo test=$test test= echo "hello world" | read test; echo test=$test test= echo "hello world" | test=`cat`; echo test=$test test= where I want the output to be test=hello world. Note I've tried putting "" quotes around "$test" that doesn't work either.

    Read the article

  • Epoll in EPOLLET mode returning 2 EPOLLIN before reading from the socket

    - by Arkaitz Jimenez
    The epoll manpage says that a fd registered with EPOLLET(edge triggered) shouldn't notify twice EPOLLIN if no read has been done. So after an EPOLLIN you need to empty the buffer before epoll_wait being able to return a new EPOLLIN on new data. However I'm experiencing problems with this approach as I'm seeing duplicated EPOLLIN events for untouched fds. This is the strace output, 0x200 is EPOLLRDHUP that is not defined yet in my glibc headers but defined in the kernel. 30285 epoll_ctl(3, EPOLL_CTL_ADD, 9, {EPOLLIN|EPOLLPRI|EPOLLERR|EPOLLHUP|EPOLLET|0x2000, {u32=9, u64=9}}) = 0 30285 epoll_wait(3, {{EPOLLIN, {u32=9, u64=9}}}, 10, -1) = 1 30285 epoll_wait(3, {{EPOLLIN, {u32=9, u64=9}}}, 10, -1) = 1 30285 epoll_wait(3, <unfinished ...> 30349 epoll_ctl(3, EPOLL_CTL_DEL, 9, NULL) = 0 30306 recv(9, "7u\0\0\10\345\241\312\t\20\f\32\r\10\27\20\2\30\200\10 \31(C0\17\32\r\10\27\20\2\30"..., 20000, 0) = 20000 30349 epoll_ctl(3, EPOLL_CTL_DEL, 9, NULL) = -1 ENOENT (No such file or directory) 30305 recv(9, " \31(C0\17\32\r\10\27\20\2\30\200\10 \31(C0\17\32\r\10\27\20\2\30\200\10 \31("..., 20000, 0) = 10011 So, after adding fd number 9 I do receive 2 consecutive EPOLLIN events before having recving the file descriptor, the syscall trace shows how I do delete the fd before reading but it should only happen once, one per event. So either I am not reading the manpage properly or something is now working here.

    Read the article

  • what is the command in terminal to extract text from a file

    - by PRINCE EMMIT
    hey can any one tell me to write the command in terminal to extract text from a html file using tags like,,,,...etc.... -i am thinking of putting these tags in a text file... -then i wanna match the tags with the help of command of terminal... -then i have to put that into a dump file(text)... because...i wanna change the text with language preference.... i tried with awk script and egrep too....but i got poor result...

    Read the article

  • Total stack sizes of threads in one process

    - by David
    I use pthreads_attr_getthreadsizes() to get default stack size of one thread, 8MB on my machine. But when I create 8 threads and allocate a very large stack size to them, say hundreds of MB, the program crash. So, I guess, shall ("Number of threads" x "stack size of per thread") shall less than a value(virtual memory size)?

    Read the article

  • vsftpd status stop/waiting Ubuntu

    - by Majin Vegeta
    I'm trying to configure ftp over amazon EC2 instance, I've installed vsftpd and did the steps of adding user and modifying the vsftpd.conf file, but I'm getting my service status as ubuntu@ip-10-38-106-212:~$ sudo service vsftpd status vsftpd stop/waiting I've tried to reinstall vsftpd but still getting the same, I've also added the port 20 and 21 in my security group policy to skip the firewall. Can anyone tell me how to check whats wrong with this vsftpd, why its stopped and not coming into running state. Thank u

    Read the article

  • Generating a reasonable ctags database for Boost

    - by Robert S. Barnes
    I'm running Ubuntu 8.04 and I ran the command: $ ctags -R --c++-kinds=+p --fields=+iaS --extra=+q -f ~/.vim/tags/stdlibcpp /usr/include/c++/4.2.4/ to generate a ctags database for the standard C++ library and STL ( libstdc++ ) on my system for use with the OmniCppComplete vim script. This gave me a very reasonable 4MB tags file which seems to work fairly well. However, when I ran the same command against the installed Boost headers: $ ctags -R --c++-kinds=+p --fields=+iaS --extra=+q -f ~/.vim/tags/boost /usr/include/boost/ I ended up with a 1.4 GB tags file! I haven't tried it yet, but that seems likes it's going to be too large to be useful. Is there a way to get a slimmer, more usable tags file for my installed Boost headers? Edit Just as a note, libstdc++ includes TR1, which has allot of Boost libs in it. So there must be something weird going on for libstdc++ to come out with a 4 MB tags file and Boost to end up with a 1.4 GB tags file.

    Read the article

  • How to define GPS module in Android?

    - by Osama Gamal
    I'm porting android to Devkit8000 which is a BeagleBoard clone. I have a GPS module connected on /dev/ttyS0. I could successfully get NMEA output when writing "cat /dev/ttyS0" in the terminal emulator. I want to know how to let android know that there is a GPS module on /dev/ttyS0 and it is outputting NMEA standard? To be able to use the android.location class with it! Is there something to edit in the android's source? adding driver for example, writing a code with android-ndk or what?

    Read the article

  • svn over HTTP proxy

    - by small_jam
    Hi all. I'm on laptop (Ubuntu) with a network that use HTTP proxy (only http connections allowed). When I use svn up for url like 'http://.....' everything is cool (google chrome repository works perfect), but right now I need to svn up from server with 'svn://....' and I see connection refused. I've set proxy configuration in /etc/subversion/servers but it doesn't help. Anyone have opinion/solution? Thanks. Anton.

    Read the article

  • Creating a "less"-like console pager interface for pysqlite3 database

    - by Eric
    I would like to add some interactive capability to a python CLI application I've writen that stores data in a SQLite3 database. Currently, my app reads-in a certain type of file, parses and analyzes, puts the analysis data into the db, and spits the formatted records to stdout (which I generally pipe to a file). There are on-the-order-of a million records in this file. Ideally, I would like to eliminate that text file situation altogether and just loop after that "parse and analyze" part, displaying a screen's worth of records, and allowing the user to page through them and enter some commands that will edit the records. The backend part I know how to do. Can anyone suggest a good starting point for creating that pager frontend either directly in the console (like the pager "less"), through ncurses, or some other system?

    Read the article

  • ./configure : /bin/sh^M : bad interpreter

    - by Vineeth
    Hello there, I've been trying to install lpng142 on my fed 12 system. Seems like a problem to me. I get this error [root@localhost lpng142]# ./configure bash: ./configure: /bin/sh^M: bad interpreter: No such file or directory [root@localhost lpng142]# How do I fix this? and for more details, I shall include the /etc/fstub file details here # # /etc/fstab # Created by anaconda on Wed May 26 18:12:05 2010 # # Accessible filesystems, by reference, are maintained under '/dev/disk' # See man pages fstab(5), findfs(8), mount(8) and/or blkid(8) for more info # /dev/mapper/VolGroup-lv_root / ext4 defaults 1 1 UUID=ce67cf79-22c3-45d4-8374-bd0075617cc8 /boot ext4 defaults 1 2 /dev/mapper/VolGroup-lv_swap swap swap defaults 0 0 tmpfs /dev/shm tmpfs defaults 0 0 devpts /dev/pts devpts gid=5,mode=620 0 0 sysfs /sys sysfs defaults 0 0 proc /proc proc defaults 0 0 [root@localhost etc]# Help, please

    Read the article

  • CPU Affinity Masks (Putting Threads on different CPUs)

    - by hahuang65
    I have 4 threads, and I am trying to set thread 1 to run on CPU 1, thread 2 on CPU 2, etc. However, when I run my code below, the affinity masks are returning the correct values, but when I do a sched_getcpu() on the threads, they all return that they are running on CPU 4. Anybody know what my problem here is? Thanks in advance! #define _GNU_SOURCE #include <stdio.h> #include <pthread.h> #include <stdlib.h> #include <sched.h> #include <errno.h> void *pthread_Message(char *message) { printf("%s is running on CPU %d\n", message, sched_getcpu()); } int main() { pthread_t thread1, thread2, thread3, thread4; pthread_t threadArray[4]; cpu_set_t cpu1, cpu2, cpu3, cpu4; char *thread1Msg = "Thread 1"; char *thread2Msg = "Thread 2"; char *thread3Msg = "Thread 3"; char *thread4Msg = "Thread 4"; int thread1Create, thread2Create, thread3Create, thread4Create, i, temp; CPU_ZERO(&cpu1); CPU_SET(1, &cpu1); temp = pthread_setaffinity_np(thread1, sizeof(cpu_set_t), &cpu1); printf("Set returned by pthread_getaffinity_np() contained:\n"); for (i = 0; i < CPU_SETSIZE; i++) if (CPU_ISSET(i, &cpu1)) printf("CPU1: CPU %d\n", i); CPU_ZERO(&cpu2); CPU_SET(2, &cpu2); temp = pthread_setaffinity_np(thread2, sizeof(cpu_set_t), &cpu2); for (i = 0; i < CPU_SETSIZE; i++) if (CPU_ISSET(i, &cpu2)) printf("CPU2: CPU %d\n", i); CPU_ZERO(&cpu3); CPU_SET(3, &cpu3); temp = pthread_setaffinity_np(thread3, sizeof(cpu_set_t), &cpu3); for (i = 0; i < CPU_SETSIZE; i++) if (CPU_ISSET(i, &cpu3)) printf("CPU3: CPU %d\n", i); CPU_ZERO(&cpu4); CPU_SET(4, &cpu4); temp = pthread_setaffinity_np(thread4, sizeof(cpu_set_t), &cpu4); for (i = 0; i < CPU_SETSIZE; i++) if (CPU_ISSET(i, &cpu4)) printf("CPU4: CPU %d\n", i); thread1Create = pthread_create(&thread1, NULL, (void *)pthread_Message, thread1Msg); thread2Create = pthread_create(&thread2, NULL, (void *)pthread_Message, thread2Msg); thread3Create = pthread_create(&thread3, NULL, (void *)pthread_Message, thread3Msg); thread4Create = pthread_create(&thread4, NULL, (void *)pthread_Message, thread4Msg); pthread_join(thread1, NULL); pthread_join(thread2, NULL); pthread_join(thread3, NULL); pthread_join(thread4, NULL); return 0; }

    Read the article

< Previous Page | 513 514 515 516 517 518 519 520 521 522 523 524  | Next Page >