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  • Howto plot two cumulative frequency graph together

    - by neversaint
    I have data that looks like this: #val Freq1 Freq2 0.000 178 202 0.001 4611 5300 0.002 99 112 0.003 26 30 0.004 17 20 0.005 15 20 0.006 11 14 0.007 11 13 0.008 13 13 ...many more lines.. Full data can be found here: http://dpaste.com/173536/plain/ What I intend to do is to have a cumulative graph with "val" as x-axis with "Freq1" & "Freq2" as y-axis, plot together in 1 graph. I have this code. But it creates two plots instead of 1. dat <- read.table("stat.txt",header=F); val<-dat$V1 freq1<-dat$V2 freq2<-dat$V3 valf1<-rep(val,freq1) valf2<-rep(val,freq2) valfreq1table<- table(valf1) valfreq2table<- table(valf2) cumfreq1=c(0,cumsum(valfreq1table)) cumfreq2=c(0,cumsum(valfreq2table)) plot(cumfreq1, ylab="CumFreq",xlab="Loglik Ratio") lines(cumfreq1) plot(cumfreq2, ylab="CumFreq",xlab="Loglik Ratio") lines(cumfreq2) What's the right way to approach this?

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  • pthreads recursively calling system command and segfault appears

    - by jess
    I have a code base where i am creating 8 threads and each thread just calls system command to display date in a continuous cycle, as shown below: void * system_thread(void *arg) { int cpu = (int)arg; printf("thread : start %d\n", cpu); for (;;) { // date ã³ãã³ãã®å®è¡ if (mode == 0) { system("date"); } else { f_hfp_nlc_Fsystem("date"); } } sleep(timerval); return NULL; } This application segfaults after running for 2-3 seconds, due to following 2 reasons: 1. read access, where the address is out of VM area 2. write acces, where it does not of write permission and its trying to modify some structure.

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  • Question with "extern" in C

    - by why
    When programming, I would like to split one large file(which contains main function) to many small files, so there is one common case: functions in small files can modify the var from main file, so i think extern is very useful! for instance: in main.c extern int i = 100; in small.c extern int i; fprintf(stdout, "var from main file: %d\n", i); I just want to know is my understanding right?

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  • gcc compilations (sometimes) result in cpu underload

    - by confusedCoder
    I have a larger C++ program which starts out by reading thousands of small text files into memory and storing data in stl containers. This takes about a minute. Periodically, a compilation will exhibit behavior where that initial part of the program will run at about 22-23% CPU load. Once that step is over, it goes back to ~100% CPU. It is more likely to happen with O2 flag turned on but not consistently. It happens even less often with the -p flag which makes it almost impossible to profile. I did capture it once but the gprof output wasn't helpful - everything runs with the same relative speed just at low cpu usage. I am quite certain that this has nothing to do with multiple cores. I do have a quad-core cpu, and most of the code is multi-threaded, but I tested this issue running a single thread. Also, when I run the problematic step in multiple threads, each thread only runs at ~20% CPU. I apologize ahead of time for the vagueness of the question but I have run out of ideas as to how to troubleshoot it further, so any hints might be helpful. UPDATE: Just to make sure it's clear, the problematic part of the code does sometimes (~30-40% of the compilations) run at 100% CPU, so it's hard to buy the (otherwise reasonable) argument that I/O is the bottleneck

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  • How to enable 'wget' to download the whole content of HTML with Javascript

    - by neversaint
    I have a site which I want to download using Unix wget. If you look at the source code and content of the file it contain section called SUMMARY. However after issuing a wget command like this: wget -O downdloadedtext.txt http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=mouse&c=gene&a=fiche&l=2610008E11Rik The content of the downdloadedtext.txt is incomplete and different with the source code of that site. For example it doesn't contain SUMMARY section. Is there a correct way to obtain the full content correctly? The reason I ask this because I want to automate the download from different values in that HTML.

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  • Identifying the parts of this typedef struct in C?

    - by Tommy
    Please help me identify the parts of this typdef struct and what each part does and how it can be used: typedef struct my_struct { int a; int b; int c; } struct_int, *p_s; struct_int struct_array[5]; my_struct is the...? struct_int is the...? *p_s is the...and can be used to point to what? struct_array is the...? Also, when creating the array of structs, why do we use struct_int instead of my_struct ? Thank You!

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  • Bash PWD Shortening

    - by dlibby00
    I'm looking for a bash function that will shorten long path names to keep my PS1 variable from getting excessively long. Something along the lines of: /this/is/the/path/to/a/really/long/directory/i/would/like/shortened might end up as: /t../i../t../p../to/a/r../l../d../i/w../like/shortened something that the took the path and a maximum acceptable number of characters to shorten to would be perfect for my .bashrc file.

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  • Application Distribution

    - by FrozenWasteland
    I have a SDL app that compiles fine, and the images show up, but only if they are in the correct folder with the binary next to them, if the images are moved they wont show up next time the application is run. How can I make a complete binary that will allow me to compile the images as well as the code, so that I can distribute one single binary, and not a zip file with all of my assets. I have looked into writing a .deb file which is what I think I need, but the process looked complicated. I am running Ubuntu 10.10 I only need to distribute to Ubuntu

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  • sigprocmask not working

    - by EpsilonVector
    I'm using sigprocmask as follows: void mask(){ sigset_t new_set,old_set; sigemptyset(&new_set); sigaddset(&new_set,SIGALRM); sigprocmask(SIG_BLOCK, &new_set, &old_set); } and to my surprise a function which prints a big list somehow gets interrupted by the signal, even though I invoke mask() at its beginning. It looks as if mask fails, since my function doesn't invoke any other functions and therefore nowhere in its run should an unmask() happen. What can cause sigprocmask to fail?

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  • what does '-' stand for in bash?

    - by trybeingarun
    Hi, What exactly are the uses of '-' in bash? I know they can be used for 1. cd - # to take you to the old 'present working directory' 2. some stream generating command | vim - # somehow vim gets the text. My question is what exactly is - in bash? In what other contexts can I use it? Regards Arun

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  • fopen() fails to open stream: permission denied, yet permissions should be valid

    - by about blank
    So, I have this error: Warning: fopen(/path/to/test-in.txt) [function.fopen]: failed to open stream: Permission denied Performing ls -l in the directory where test-in.txt is produces the following output: -rw-r--r-- 1 $USER $USER 1921 Sep 6 20:09 test-in.txt -rw-r--r-- 1 $USER $USER 0 Sep 6 20:08 test-out.txt In order to get past this, I decided to perform the following: chgrp -R www-data /path/to/php/webroot And then did: chmod g+rw /path/to/php/webroot Yet, I still get this error when I run my php5 script to open the file. Why is this happening? I've tried this using LAMP as well as cherokee through CGI, so it can't be this. Is there a solution of some sort? Edit I'll also add that I'm just developing via localhost right now. Update - PHP fopen() line $fullpath = $this->fileRoot . $this->fileInData['fileName']; $file_ptr = fopen( $fullpath, 'r+' ); I should also mention I'd like to stick with Cherokee if possible. What's this deal about setting file permissions for Apache/Cherokee?

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  • Regarding PID Shell Script

    - by arav
    I am calling another shell script testarg.sh within my main script. the logfiles of testarg.sh are stored in $CUSTLOGS in the below format testarg.DDMONYY.PID.log example: testarg.09Jun10.21165.log In the main script after the testarg process gets completed i need to grep the log file for the text "ERROR" and "COMPLETED SUCCESSFULLY". How do i get the PID of the process and combine with DDMONYY for grepping. Also i need to check whether file exists before grepping $CUSTBIN/testarg.sh $CUSTBIN/testarg.sh rc=$? if [ $rc -ne 0 ]; then return $CODE_WARN fi

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  • spin_lock_irqsave vs spin_lock_irq

    - by cojocar
    On a SMP machine we must use spin_lock_irqsave and not spin_lock_irq from interrupt context. Why would we want to save the flags (which contains the IF)? Is there another interrupt routine that could interrupt us? The flags are per CPU?

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  • What to do if exec() fails?

    - by Grigory
    Let's suppose we have a code doing something like this: int pipes[2]; pipe(pipes); pid_t p = fork(); if(0 == p) { dup2(pipes[1], STDOUT_FILENO); execv("/path/to/my/program", NULL); ... } else { //... parent process stuff } As you can see, it's creating a pipe, forking and using the pipe to read the child's output (I can't use popen here, because I also need the PID of the child process for other purposes). Question is, what should happen if in the above code, execv fails? Should I call exit() or abort()? As far as I know, those functions close the open file descriptors. Since fork-ed process inherits the parent's file descriptors, does it mean that the file descriptors used by the parent process will become unusable?

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  • The conventional location for storing my Java libraries and applications in UNIX based systems

    - by Bytecode Ninja
    I usually store the Java applications and JAR files that I download from the Web in the ~/Java folder on my computer (an OS X machine). I have been doing this since the days when I was a Windows user. However I think in UNIX based systems user local apps are conventionally stored in another directory. I have a feeling that this directory should either be /usr/local/, /usr/local/USERNAME, /opt/local, or /opt/local/USERNAME but I am not sure. Any ideas which directory can I use for this purpose? Please note that, I am talking about archive files that I download from the Web, unpack and use locally and not programs that have installation scripts or MacPorts, etc.

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  • Ubuntu option vanishes after setting up windows XP(?) [closed]

    - by Ravi
    I have installed both windows XP as well as Ubuntu 9.04 on my machine.I can choose between them using dual boot option at the startup.Up to this, it is fine. But unfortunately when my XP crashes, I need to install XP again.But when I do it,after installing XP successfully, dual boot option no longer appears at the startup. So the Ubuntu goes in vein. What is the problem here? How do I solve it?

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  • How to repair Java in Ubuntu after trying to switch to Java 6 using update-java-alternatives

    - by Kau-Boy
    I tried to switch from Java 5 to Java 6 using the "update-java-alternatives" command like explained on this page: https://help.ubuntu.com/community/Java But afterwards I get the following error when I tried to execute java: root@webserver:~# java Error occurred during initialization of VM Could not reserve enough space for object heap Could not create the Java virtual machine. I also tried to reinstall the java binaries using "apt-get" but I didn't succeed reinstalling it. I would like to post the "apt-get" errors, but unfortunately I don't know how to print out the error messages in English and not in German. My system is a Ubuntu 8.04 ROOT server. Here is the (Google translated) english text tring to install Java 6 again: root@server:~# apt-get install sun-java6-jdk Reading package lists ... Ready Dependency tree Reading state information ... Ready sun-java6-jdk is already the newest version. sun-java6-jdk set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 86 not upgraded. 1 not fully installed or removed. After this operation, 0B of additional disk space will be used. Set up a sun-java6-bin (6-03-0ubuntu2) ... Could not create the Java virtual machine. dpkg: error processing sun-java6-bin (- configure): Subprocess post-installation script returned error exit status 1 Errors were encountered while processing: sun-java6-bin E: Sub-process / usr / bin / dpkg returned an error code (1) I hope that this might help you helping me.

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  • I wrote a new X11 keyboard layout file, how do I get my system to recognize it?

    - by grimborg
    I like to configure my keys my way, so I wrote a keyboard symbols file and I put it in /usr/share/X11/xkb/symbols/cat I use it by running setxkbmap cat -variant dvorak (and it works), but it doesn't show up in the console configuration (dpkg-reconfigure console-setup) nor in the Gnome keyboard settings... nor anywhere else, so I have to run setxkbmap every time. I suppose that I have to register it somewhere, but where? Any hints? Thanks!

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  • How can I determine if a file is read-only for my process on *nix?

    - by user109078
    Using the stat function, I can get the read/write permissions for: owner user other ...but this isn't what I want. I want to know the read/write permissions of a file for my process (i.e. the application I'm writing). The owner/user/other is only helpful if I know if my process is running as the owner/user/other of the file...so maybe that's the solution but I'm not sure of the steps to get there.

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  • [sed] Multiline trimming

    - by wwrob
    I have a html file that I want to trim. I want to remove a section from the beginning all the way to a given string, and from another string to the end. How do I do that, preferably using sed?

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  • Passwordless SSH using cgi-perl script

    - by AV
    Hello, This is my first shot at trying out cgi-perl scripts. I have SSH keys set up between my (root user) local machine and a remote machine. I'm trying to run a command on the remote box and display the output on a webpage hosted from my local machine. The script runs fine from command line however, it throws SSH key error when called from the webpage because the user running the script is apache and not root. Is there a way to get around this issue?

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  • Need a very simple bash-based webserver for logging XML in HTTP POST

    - by Syffys
    As in title, it's for testing purpose and I need it to be extremely light (1 line to 1 single light file). Here is a XML query sample: XML_QUERY=$(cat <<EOF <?xml version='1.0' encoding='UTF-8'?> <Test></Test> EOF ) curl -H "Content-type: text/xml; charset=utf-8" -H "Soapaction: \"\"" -k -d "${XML_QUERY}" http://localhost:8088 Here are some of the tracks I have found so far even if I wasnt able to adapt them to work as I expect: Netcat minimal webserver: Problem is that my nc does not have the -q option, so the connection is closing before delivering the XML content Netcat Only webserver: Same as above Python based: But does not handle POST Thanks in advance!

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