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  • Shell script to copy files

    - by Hulk
    If there exist a directory, /backup/ And the files in it are a.gz b.gz c.gz And another directory /backup-directorybackup And the files in it are a.gz I need a shells script to compare two directories if the files are present then ignore it and if the filesare not present copy it to the destination directory Thanks..

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  • Parsing Chunk of Data into Hash of Array With Perl

    - by neversaint
    I have data that looks like this: #info #info2 1:SRX004541 Submitter: UT-MGS, UT-MGS Study: Glossina morsitans transcript sequencing project(SRP000741) Sample: Glossina morsitans(SRS002835) Instrument: Illumina Genome Analyzer Total: 1 run, 8.3M spots, 299.9M bases Run #1: SRR016086, 8330172 spots, 299886192 bases 2:SRX004540 Submitter: UT-MGS Study: Anopheles stephensi transcript sequencing project(SRP000747) Sample: Anopheles stephensi(SRS002864) Instrument: Solexa 1G Genome Analyzer Total: 1 run, 8.4M spots, 401M bases Run #1: SRR017875, 8354743 spots, 401027664 bases 3:SRX002521 Submitter: UT-MGS Study: Massive transcriptional start site mapping of human cells under hypoxic conditions.(SRP000403) Sample: Human DLD-1 tissue culture cell line(SRS001843) Instrument: Solexa 1G Genome Analyzer Total: 6 runs, 27.1M spots, 977M bases Run #1: SRR013356, 4801519 spots, 172854684 bases Run #2: SRR013357, 3603355 spots, 129720780 bases Run #3: SRR013358, 3459692 spots, 124548912 bases Run #4: SRR013360, 5219342 spots, 187896312 bases Run #5: SRR013361, 5140152 spots, 185045472 bases Run #6: SRR013370, 4916054 spots, 176977944 bases What I want to do is to create a hash of array with first line of each chunk as keys and SR## part of lines with "^Run" as its array member: $VAR = { 'SRX004541' => ['SRR016086'], # etc } But why my construct doesn't work. And it must be a better way to do it. use Data::Dumper; my %bighash; my $head = ""; my @temp = (); while ( <> ) { chomp; next if (/^\#/); if ( /^\d{1,2}:(\w+)/ ) { print "$1\n"; $head = $1; } elsif (/^Run \#\d+: (\w+),.*/){ print "\t$1\n"; push @temp, $1; } elsif (/^$/) { push @{$bighash{$head}}, [@temp]; @temp =(); } } print Dumper \%bighash ;

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  • Ubuntu 10.04: Unable to Start RabbitMQ Server Post-Installation

    - by Garland W. Binns
    After installing RabbitMQ on Ubuntu 10.04 I receive a failure message that the service was unable to start. Any insight into the issue would be greatly appreciated! Below are contents of startup_log and startup_err. Startup_log: {error_logger,{{2012,7,7},{15,50,31}},"Protocol: ~p: register error: ~p~n",["inet_tcp",{{badmatch,{error,etimedout}},[{inet_tcp_dist,listen,1},{net_kernel,start_protos,4},{net_kernel,start_protos,3},{net_kernel,init_node,2},{net_kernel,init,1},{gen_server,init_it,6},{proc_lib,init_p_do_apply,3}]}]} {error_logger,{{2012,7,7},{15,50,31}},crash_report,[[{initial_call,{net_kernel,init,['Argument__1']}},{pid,<0.20.0},{registered_name,[]},{error_info,{exit,{error,badarg},[{gen_server,init_it,6},{proc_lib,init_p_do_apply,3}]}},{ancestors,[net_sup,kernel_sup,<0.9.0]},{messages,[]},{links,[#Port<0.100,<0.17.0]},{dictionary,[{longnames,false}]},{trap_exit,true},{status,running},{heap_size,987},{stack_size,24},{reductions,512}],[]]} {error_logger,{{2012,7,7},{15,50,31}},supervisor_report,[{supervisor,{local,net_sup}},{errorContext,start_error},{reason,{'EXIT',nodistribution}},{offender,[{pid,undefined},{name,net_kernel},{mfa,{net_kernel,start_link,[[rabbitmqprelaunch877,shortnames]]}},{restart_type,permanent},{shutdown,2000},{child_type,worker}]}]} {error_logger,{{2012,7,7},{15,50,31}},supervisor_report,[{supervisor,{local,kernel_sup}},{errorContext,start_error},{reason,shutdown},{offender,[{pid,undefined},{name,net_sup},{mfa,{erl_distribution,start_link,[]}},{restart_type,permanent},{shutdown,infinity},{child_type,supervisor}]}]} {error_logger,{{2012,7,7},{15,50,31}},std_info,[{application,kernel},{exited,{shutdown,{kernel,start,[normal,[]]}}},{type,permanent}]} {"Kernel pid terminated",application_controller,"{application_start_failure,kernel,{shutdown,{kernel,start,[normal,[]]}}}"} Startup_err: Crash dump was written to: erl_crash.dump Kernel pid terminated (application_controller) ({application_start_failure,kernel,{shutdown,{kernel,start,[normal,[]]}}})

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  • ps: Clean way to only get parent processes?

    - by shkschneider
    I use ps ef and ps rf a lot. Here is a sample output for ps rf: PID TTY STAT TIME COMMAND 3476 pts/0 S 0:00 su ... 3477 pts/0 S 0:02 \_ bash 8062 pts/0 T 1:16 \_ emacs -nw ... 15733 pts/0 R+ 0:00 \_ ps xf 15237 ? S 0:00 uwsgi ... 15293 ? S 0:00 \_ uwsgi ... 15294 ? S 0:00 \_ uwsgi ... And today I needed to retrieve only the master process of uwsgi in a script (so I want only 15237 but not 15293 nor 15294). As of today, I tried some ps rf | grep -v ' \\_ '... but I would like a cleaner way. I also came accross another solution from unix.com's forums: ps xf | sed '1d' | while read pid tty stat time command ; do [ -n "$(echo $command | egrep '^uwsgi')" ] && echo $pid ; done But still a lot of pipes and ugly tricks. Is there really no ps option or cleaner tricks (maybe using awk) to accomplish that?

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  • How can I make this if's work in Bash ?

    - by Dragos
    In bash how can I make a construction like this to work: if (cp /folder/path /to/path) && (cp /anotherfolder/path /to/anotherpath) then echo "Succeeded" else echo "Failed" fi The if should test for the $? return code of each command and tie them with &&. How can I make this in Bash ?

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  • MySQL Locking Up

    - by Ian
    I've got a innodb table that gets a lot of reads and almost no writes (like, 1 write for every 400,000 reads approx). I'm running into a pretty big problem though when I do INSERT into the table. MySQL completely locks up. It uses 100% cpu, and every single other table (in other databases even) have their statuses set to "Locked" until the INSERT is done. This is a big problem because MySQL stays locked up for up to 4 minutes. I'm using version 5.1.47 (rpm from mysql.com). Any ideas?

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  • Tabcompletion and docview while editing rc.lua

    - by Berxue
    I saw that there is a lua plugin for eclipse and there is a docpage on the awesome main page api_doc and all the .lua files in /usr/share/awesome/lib. So I thought it must be possible to create a Library or Execution Environment so that one has tabcompletion and docview. So I tried making my own Execution Environment: wrote the standard .rockspec file downloaded the documentation made an ofline version of it and put it in docs/ folder ziped the files and folders in /usr/share/awesome/lib ziped all up tried it out ... and it failed. When I try to view a documentaion for a .lua file I get "Note: This element has no attached documentation." Questions: Am I totaly wrong in my doing (because I have the feeling I am)? Is there any way to edit the rc.lua with tabcompletion and docview?

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  • Script to Copy User according to UID

    - by bradlis7
    I'm looking for a way to copy all non-system users from one PC to another. I can get the group and passwd files copied over using this awk -F":" ' $3 > 499 ' etc/passwd >> /etc/passwd awk -F":" ' $3 > 499 ' etc/group >> /etc/group But, how would I go about getting the shadow file copied over since it does not store the UID? Assume that there are over 1000 users, so doing a grep with the usernames, such as egrep '(bob|bill|sarah|sal):' etc/shadow >> /etc/shadow generating the usernames from the awk code above, would be a bit inefficient, but a possible option.

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  • Array in Bash Not Found

    - by Waffle
    I am trying to declare an array in bash, but when the code is run it says it cannot find the array. I have tried to write out the declaration of the array in several different ways, but it seems no matter how I try to declare it I cannot get it to work. I originally tried to declare it as such: candidate[1]= 0 candidate[2]= 0 candidate[3]= 0 The error messages that are returned are: votecalculation.sh: 13: candidate[1]=: not found votecalculation.sh: 14: candidate[2]=: not found votecalculation.sh: 15: candidate[3]=: not found After this I tried another solution I found online: ARRAY=( 'can1' 'can2' 'can3' ) When that is used it returns this error: votecalculation.sh: 12: Syntax error: "(" unexpected I am new to Bash and am getting really confused about arrays. Is there some specific way I need to declare an array or am I just going about it completely wrong?

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  • Bash scripting - Iterating through "variable" variable names for a list of associative arrays

    - by user1550254
    I've got a variable list of associative arrays that I want to iterate through and retrieve their key/value pairs. I iterate through a single associative array by listing all its keys and getting the values, ie. for key in "${!queue1[@]}" do echo "key : $key" echo "value : ${queue1[$key]}" done The tricky part is that the names of the associative arrays are variable variables, e.g. given count = 5, the associative arrays would be named queue1, queue2, queue3, queue4, queue5. I'm trying to replace the sequence above based on a count, but so far every combination of parentheses and eval has not yielded much more then bad substitution errors. e.g below: for count in {1,2,3,4,5} do for key in "${!queue${count}[@]}" do echo "key : $key" echo "value : ${queue${count}[$key]}" done done Help would be very much appreciated!

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  • Dynamic loading of shared objects using dlopen()

    - by Andy
    Hi, I'm working on a plain X11 app. By default, my app only requires libX11.so and the standard gcc C and math libs. My app has also support for extensions like Xfixes and Xrender and the ALSA sound system. But this feature shall be made optional, i.e. if Xfixes/Xrender/ALSA is installed on the host system, my app will offer extended functionality. If Xfixes or Xrender or ALSA is not there, my app will still run but some functionality will not be available. To achieve this behaviour, I'm not linking dynamically against -lXfixes, -lXrender and -lasound. Instead, I'm opening these libraries manually using dlopen(). By doing it this way, I can be sure that my app won't fail in case one of these optional components is not present. Now to my question: What library names should I use when calling dlopen()? I've seen that these differ from distro to distro. For example, on openSUSE 11, they're named the following: libXfixes.so libXrender.so libasound.so On Ubuntu, however, the names have a version number attached, like this: libXfixes.so.3 libXrender.so.1 libasound.so.2 So trying to open "libXfixes.so" would fail on Ubuntu, although the lib is obviously there. It just has a version number attached. So how should my app handle this? Should I let my app scan /usr/lib/ first manually to see which libs we have and then choose an appropriate one? Or does anyone have a better idea? Thanks guys, Andy

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  • Drawing on top of every windows on X11

    - by Vítor Baptista
    Hi, I am trying to make an arcade machine. The user will purchase credits, which will allow him to play for X minutes. I want to write "9:42 minutes left" at the left corner of the screen, even if he's playing a full screen game (UrbanTerror, for example). I would really like if I could do this with Ruby, but any other language is OK. Any ideas? Thanks in advance.

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  • Custom script in .screenrc

    - by benoror
    Hi. I made a script that spawns a remote shell or runs a local shell whether it's on the current machine or not: #!/bin/bash # By: benoror <[email protected]> # # spawns a remote shell or runs a local shell whether it's on the current machine or not # $1 = hostname if [ "$(hostname)" == "$1" ]; then bash else ssh "$1.local" fi For example, if I'm on server1: ./spawnshell.sh server1 -> runs bash ./spawnshell.sh server2 -> ssh to server2.local I want that script to run automatically in separate tabs in GNU Screen, but I can't make it run, my .screenrc: ... screen -t "@server1" 1 exec /home/benoror/scripts/spawnshell.sh server1 screen -t "@server2" 2 exec /home/benoror/scripts/spawnshell.sh server2 ... But it doesn't works, I've tried without 'exec', with -X option and a lot more. Any ideas ?

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  • comparing two files and merge the data

    - by Ganz Ricanz
    I have the below files, total.txt order1,5,item1 order2,6,item2 order3,7,item3 order4,6,item4 order8,9,item8 changed.txt order3,8,item3 order8,12,item8 total.txt is total order data and changed.txt is recently changed data. I want to merge the recent change with total, i want the output as , Output.txt order1,5,item1 order2,6,item2 order3,8,item3 order4,6,item4 order8,12,item8 Note : 2nd column of (3rd & 5th) row of the total.txt is updated with changed.txt file i have used the below nawk to compare the first coulmn, but not able to print it to the output file. Please help on complete the below command nawk -F"," 'NR==FNR {a[$1]=$2;next} ($1 in a) "print??"' total.txt changed.txt

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  • Best practices for withstanding launch day traffic burst

    - by Sam McAfee
    We are working on a website for a client that (for once) is expected to get a fair amount of traffic on day one. There are press releases, people are blogging about it, etc. I am a little concerned that we're going to fall flat on our face on day one. What are the main things you would look at to ensure (in advance without real traffic data) that you can stay standing after a big launch. Details: This is a L/A/M/PHP stack, using an internally developed MVC framework. This is currently being launched on one server, with Apache and MySQL both on it, but we can break that up if need be. We are already installing memcached and doing as much PHP-level caching as we can think of. Some of the pages are rather query intensive, and we are using Smarty as our template engine. Keep in mind there is no time to change any of these major aspects--this is the just the setup. What sorts of things should we watch out for?

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  • How to compare two floating-point values in shell script

    - by Reem
    I had to do a division in shell script and the best way was: result1=`echo "scale=3; ($var1 / $total) * 100"| bc -l` result2=`echo "scale=3; ($var2 / $total) * 100"| bc -l` but I want to compare the values of $result1 and $result2 Using if test $result1 -lt $result2 or if [ $result1 -gt $result2 ] didn't work :( Any idea how to do that?

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  • Accidentally deleted /opt/local/bin without backup. Any help?

    - by Aaron
    Hi all, I'm on a Mac OS X 10.5.8 I was recently uninstalling mysql5 from /opt/local/bin. I typed: rm -rf /opt/local/bin mysql* instead of rm -rf /opt/local/bin/mysql* This deleted my entire /opt/local/bin directory which puts me in a bit of a bind. Is there any way to recover these files? If not, I have a friend that is using a similar set of programs, would it be possible to use the contents of his folder? If I end up needing to re-install everything in this folder, what is the best way to go about doing this? Thanks in advance!

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  • GTK+ Compile Error

    - by Alon
    When trying to compile GTK+ with target for DirectFB, it throws: configure: error: conditional "XINPUT_NONE" was never defined. Usually this means the macro was only invoked conditionally. Any ideas? Thanks.

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  • start-stop-daemon quoted arguments misinterpreted

    - by Martin Westin
    Hi, I have been trying to make an init script using start-stop-daemon. I am stuck on the arguments to the daemon. I want to keep these in a variable at the top of the script but I can't get the quotations to filter down correctly. I'll use ls here so we don't have to look at binaries and arguments that most people wont know or care about. The end result I am looking for is for start-stop... to run ls -la "/folder with space/" DAEMON=/usr/bin/ls DAEMON_OPTS='-la "/folder with space/"' start-stop-daemon --start --make-pidfile --pidfile $PID --exec $DAEMON -- $DAEMON_OPTS Double escaping the options and trying innumerable variations of quotations do not help... Then they end up at the daemon they are always messed up. Enclosing $DAEMON_OPTS in quotes changes things... then they are seen as one since quote... never the right number though :) Echoing the command-line (start-stop...) prints exactly the right stuff to screen. But the daemon (the real one, not ls) complains about the wrong number of arguments. How do I specify a variable so that quotes inside it are brought along to the daemon correctly? Thanks, Martin

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  • Trying to install mod_proxy in Apache-Httpd-2.2.15

    - by Dspace
    Hello, I have spent the afternoon trying to install the mod_proxy module into apache. I have tried ./configure --prefix=/opt/apache2 --enable-proxy --enable-proxy-http ./configure --prefix=/opt/apache2 --enable-module=proxy After it finishes installing, navigating to /opt/apache2/modules only shows one file: httpd.exp. It seems that the module is not being installed. Any help is appreciated. Thanks.

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  • Connections hanging on read()

    - by viraptor
    Hi, Short version: I've got a strange issue with a server accepting TCP connections. Even though there are normally some processes waiting, at some volume of connections it hangs. Long version: The server is written in Perl and binds a $srv socket with the reuse flag and listen == 5. Afterwards, it forks into 10 processes with a loop of $clt=$srv->accept(); do_processing($clt); $clt->shutdown(2); The client written in C is also very simple - it sends some lines, then receives all lines available and does a shutdown(sockfd, 2); There's nothing async going on and at the end both send and receive queues are empty (as reported by netstat). Connections last only ~20ms. All clients behave the same way, are the same implementation, etc. Now let's say I'm accepting X connections from client 1 and another X from client 2. Processes still report that they're idle all the time. If I add another X connections from client 3, suddenly the server processes start hanging just after accepting. The first blocking thing they do after accept(); is while (<$clt>) ... - but they don't get any data (on the first try already). Suddenly all 10 processes are in this state and do not stop waiting. On strace, the server processes seem to hang on read(), which makes sense. There are loads of connections in TIME_WAIT state belonging to that server (~100 when the problem starts to manifest), but this might be a red herring. What could be happening here?

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  • jruby and Matz Ruby on the same maschine ?

    - by erhard
    Is it possible to run Jruby and native ruby on the same maschine ? For example installing rake or gem under both it find's Matz Ruby extensions /usr/bin/gem or /usr/bin/rake The MRI gems and jruby gems are mixed up. Is there any experience in that constellation ? Thanks erhard

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  • Bash script function return value problem

    - by Eedoh
    Hi to all. Can anyone help me return the correct value from a bash script function? Here's my function that should return first (and only) line of the file passed as an argument: LOG_FILE_CREATION_TIME() { return_value=`awk 'NR==1' $1` return return_value } And here's my call of that function in the other script: LOG_FILE_CREATION_TIME "logfile" timestamp=$? echo "Timestamp = $timestamp" I always get some random values with this code. If, for example, there's a value of 62772031 in the "logfile", I get Timestamp = 255 as an output. For some other values in the file, I get other random values as a return value, never the correct one. Any ideas?

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