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• How to declare a(n) vector/array of reducer objects in Cilk++?

  - by Jin

  Hi All, I had a problem when I am using Cilk++, an extension to C++ for parallel computing. I found that I can't declare a vector of reducer objects: typedef cilk::reducer_opadd<int> T_reducer; vector<T_reducer> bitmiss_vec; for (int i = 0; i < 24; ++i) { T_reducer r; bitmiss_vec.push_back(r); } However, when I compile the code with Cilk++, it complains at the push_back() line: cilk++ geneAttack.cilk -O1 -g -lcilkutil -o geneAttack /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In member function ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Tp*, const _Tp&) [with _Tp = cilk::reducer_opadd<int>]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:601: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:229: error: ‘cilk::reducer_opadd<Type>::reducer_opadd(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/ext/new_allocator.h:107: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename std::_Vector_base<_Tp, _Alloc>::_Tp_alloc_type::pointer, std::vector<_Tp, _Alloc> >, const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:229: error: ‘cilk::reducer_opadd<Type>::reducer_opadd(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:252: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:230: error: ‘cilk::reducer_opadd<Type>& cilk::reducer_opadd<Type>::operator=(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:256: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In static member function ‘static _BI2 std::__copy_backward<_BoolType, std::random_access_iterator_tag>::__copy_b(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*, bool _BoolType = false]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:465: instantiated from ‘_BI2 std::__copy_backward_aux(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:474: instantiated from ‘static _BI2 std::__copy_backward_normal<<anonymous>, <anonymous> >::__copy_b_n(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*, bool <anonymous> = false, bool <anonymous> = false]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:540: instantiated from ‘_BI2 std::copy_backward(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:253: instantiated from ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename std::_Vector_base<_Tp, _Alloc>::_Tp_alloc_type::pointer, std::vector<_Tp, _Alloc> >, const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:230: error: ‘cilk::reducer_opadd<Type>& cilk::reducer_opadd<Type>::operator=(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:433: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In function ‘void std::_Construct(_T1*, const _T2&) [with _T1 = cilk::reducer_opadd<int>, _T2 = cilk::reducer_opadd<int>]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_uninitialized.h:87: instantiated from ‘_ForwardIterator std::__uninitialized_copy_aux(_InputIterator, _InputIterator, _ForwardIterator, std::__false_type) [with _InputIterator = cilk::reducer_opadd<int>*, _ForwardIterator = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_uninitialized.h:114: instantiated from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = cilk::reducer_opadd<int>*, _ForwardIterator = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_uninitialized.h:254: instantiated from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>) [with _InputIterator = cilk::reducer_opadd<int>*, _ForwardIterator = cilk::reducer_opadd<int>*, _Tp = cilk::reducer_opadd<int>]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:275: instantiated from ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename std::_Vector_base<_Tp, _Alloc>::_Tp_alloc_type::pointer, std::vector<_Tp, _Alloc> >, const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:229: error: ‘cilk::reducer_opadd<Type>::reducer_opadd(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_construct.h:81: error: within this context make: *** [geneAttack] Error 1 jinchen@galactica:~/workspace/biometrics/genAttack$ make cilk++ geneAttack.cilk -O1 -g -lcilkutil -o geneAttack geneAttack.cilk: In function ‘int cilk cilk_main(int, char**)’: geneAttack.cilk:670: error: expected primary-expression before ‘,’ token geneAttack.cilk:670: error: expected primary-expression before ‘}’ token geneAttack.cilk:674: error: ‘bitmiss_vec’ was not declared in this scope make: *** [geneAttack] Error 1 The Cilk++ manule says it supports array/vector of reducers, although there are performance issues to consider: "If you create a large number of reducers (for example, an array or vector of reducers) you must be aware that there is an overhead at steal and reduce that is proportional to the number of reducers in the program. " Anyone knows what is going on? How should I declare/use vector of reducers? Thank you

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• How I can fix this code to allow my AVR to talk over serial port?

  - by samoz

  Hi guys, I've been pulling my hair out lately trying to get an ATmega162 on my STK200 to talk to my computer over RS232. I checked and made sure that the STK200 contains a MAX202CPE chip. I've configured the chip to use its internal 8MHz clock and divided it by 8. I've tried to copy the code out of the data sheet (and made changes where the compiler complained), but to no avail. My code is below, could someone please help me fix the problems that I'm having? I've confirmed that my serial port works on other devices and is not faulty. Thanks! #include <avr/io.h> #include <avr/iom162.h> #define BAUDRATE 4800 void USART_Init(unsigned int baud) { UBRR0H = (unsigned char)(baud >> 8); UBRR0L = (unsigned char)baud; UCSR0B = (1 << RXEN0) | (1 << TXEN0); UCSR0C = (1 << URSEL0) | (1 << USBS0) | (3 << UCSZ00); } void USART_Transmit(unsigned char data) { while(!(UCSR0A & (1 << UDRE0))); UDR0 = data; } unsigned char USART_Receive() { while(!(UCSR0A & (1 << RXC0))); return UDR0; } int main() { USART_Init(BAUDRATE); unsigned char data; // all are 1, all as output DDRB = 0xFF; while(1) { data = USART_Receive(); PORTB = data; USART_Transmit(data); } }

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• jRuby and Matz's Ruby on the same machine?

  - by erhard

  Is it possible to run jRuby and native ruby on the same machine? For example installing rake or gem under both it find's Matz Ruby extensions /usr/bin/gem or /usr/bin/rake The MRI gems and jruby gems are mixed up. Is there any experience in that constellation ? Thanks erhard

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• What's the fastest way using lsof to find a single open file?

  - by jjclarkson

  I'm trying to test a single file if it is open using lsof. Is there a faster way than this? $result = exec('lsof | grep filename | wc -l'); if($result > 0) { //file is open } I'm thinking their must be a way to just test for one file if you know the filename. All I really need is a true or false.

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• How to make new file permission inherit from the parent directory?

  - by Wai Yip Tung

  I have a directory called data. Then I am running a script under the user id 'robot'. robot writes to the data directory and update files inside. The idea is data is open for both me and robot to update. So I setup the permission and owner group like this drwxrwxr-x 2 me robot-grp 4096 Jun 11 20:50 data where both me and robot belongs to the 'robot-grp'. I change the permission and the owner group recursively like the parent directory. I regularly upload new files into the data directory using rsync. Unfortunately, new files uploaded does not inherit the parent directory's permission as I hope. Instead it looks like this -rw-r--r-- 1 me users 6 Jun 11 20:50 new-file.txt When robot tries to update new-file.txt, it fails due to lack of file permission. I'm not sure if setting umask helps. In anycase the new files does not really follow it. $ umask -S u=rwx,g=rx,o=rx I'm often confounded by Unix file permission. Do I even have a right plan? I'm using Debian lenny.

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• lighttpd start/stop/restart script doesn't work

  - by Claudiu

  Hi, I want to restart lighttpd using */lighttpd restart command, but nothing happens, no message, error, just a new cli line waiting for command. I've examined lighttpd file and lighttpd.conf and they seem to be ok.. What should I do more ?

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• Amazon AWS s3fs mount problem on Fedora 14

  - by Alex

  I successfully compiled and installed s3fs (http://code.google.com/p/s3fs/) on my Fedora 14 machine. I included the password credentials in /etc/ as specified in the guide. When I run: sudo /usr/bin/s3fs bucket_name /mnt/bucket_name/ it runs successfully. (note: the bucket name is the same as the folder name in /mnt/). When I run ls in /mnt/ I get the error "ls: cannot access bucket_name: Permission denied". When I run sudo chmod 640 /mnt/bucket_name I get "chmod: changing permissions of `bucket_name': Input/output error". When I reboot the machine I can access the folder /mnt/bucket_name normally but it is not mapped to the s3 bucket. So, basically I have two questions. 1) How do I access the folder (/mnt/bucket_name) as usual after I mount it to the s3 bucket and 2) How can I keep it mounted even after machine restart. Regards

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• How to convert dos/windows newline to unix newline in bash script?

  - by Koran Molovik

  I bash, how do I convert dos/windows newlines to unix? It must be non-interactive, not like starting vi and typing something in, but a command on the command line that can be put in a script file. The dos2unix and unix2dos commands are not available on the system. How do I do this with commands like sed/awk/tr?

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• Remove files from Bazaar

  - by Kristopher Ives

  I'm using Bazaar (bzr) to keep source code for a website updated, but we've ran into a problem when we remove files from version control. The files we are removing are ones we never intended to version to begin with. When this happens we use bzr rm --keep to remove the file from version control, but keep the file in the file system. Doing a bzr push or bzr pull results in the removed file(s) being removed on the other branches (other sites that use our code) We need a way to make sure that a bzr push or bzr pull doesn't actually remove those from the working copy. Anyone have any ideas?

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• How do I change the root directory of an apache server?

  - by Spencer Cooley

  Does anyone know how to change the document root of the Apache server? I basically want localhost to come from /users/spencer/projects directory instead of /var/www. Edit I ended up figuring it out. Some suggested I change the httpd.conf file, but I ended up finding a file in /etc/apache2/sites-available/default and changed the root directory from /var/www to /home/myusername/projects_folder and that worked.

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• Declaration of arrays before "normal" variables in c?

  - by bjarkef

  Hi We are currently developing an application for a msp430 MCU, and are running into some weird problems. We discovered that declaring arrays withing a scope after declaration of "normal" variables, sometimes causes what seems to be undefined behavior. Like this: foo(int a, int *b); int main(void) { int x = 2; int arr[5]; foo(x, arr); return 0; } foo sometimes is passed a pointer as the second variable, that does not point to the arr array. We verify this by single stepping through the program, and see that the value of the arr variable in the main scope is not the same as the value of the b pointer variable in the foo scope. And no, this is not really reproduceable, we have just observed this behavior once in a while. Changing the example seems to solve the problem, like this: foo(int a, int *b); int main(void) { int arr[5]; int x = 2; foo(x, arr); return 0; } Does anybody have any input or hints as to why we experience this behavior? Or similar experiences? The MSP430 programming guide specifies that code should conform to the ANSI C89 spec. and so I was wondering if it says that arrays has to be declared before non-array variables? Any input on this would be appreciated.

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• what is the command in terminal to extract text from a file

  - by PRINCE EMMIT

  hey can any one tell me to write the command in terminal to extract text from a html file using tags like,,,,...etc.... -i am thinking of putting these tags in a text file... -then i wanna match the tags with the help of command of terminal... -then i have to put that into a dump file(text)... because...i wanna change the text with language preference.... i tried with awk script and egrep too....but i got poor result...

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• Open a new tab in gnome-terminal using command line.

  - by Vikrant Chaudhary

  Hi, When I write gnome-terminal --tab at the terminal, I expect it to open a new tab in the same terminal window. But it opens a new window instead. I found out that its intention is to open a new tab in a new window, i.e., if I write gnome-terminal --tab --tab it will open a new window with two tabs. So, the question is, how can I open a new tab in the current window using a command in gnome-terminal? I'm using Ubuntu 9.04 x64.

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• List of common ways those could shut down server unexpectedly ?

  - by SpawnCxy

  After running a bash fork bomb which made my webserver down, I think I should be more careful even not under root.I thought it would be totally fine while I'm not under root.So I ignored the warning and ran the bash fork bomb which is :() { :|:& }; : .(Please don't run it if u don't understand this code cuz it will make you system down).And I think I need a list of common ways those could cause a sever shutting down unexpectly even not under root. Any suggestion would be appreciated. Regards `

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• Where has my parallel port gone? ioperm(888,1,1) returns -1.

  - by marcusw

  I have an old Dell Dimension 8200 running Gentoo which I use solely to control various things using the parallel port. After shutting it down a few weeks ago, I started it up again today and tried to access the parallel port like I usually do. Unfortunately, my code bombed out when it tried to call ioperm(888,1,1) to grab the parallel port which returned an error code of -1. There have been no changes to the system be it hardware or software, no updates, no tweaking, no dropping the case, no over-amping the data pins, nothing. The port and the software have been working fine for months with no changes, and were working fine when I shut it down last. Running my code with root privileges changes nothing. What is breaking this and how can I fix it?

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• Compiling x264 with mp4 support problem

  - by johnas

  I'm trying to compile x264 with mp4 output support. I download the latest version from their git by typing git clone git://git.videolan.org/x264.git When I run ./configure it configures and I'm able to make it. But when i try to configure it with ./configure --enable-mp4-output and then try to make it, it returns a strange error, indicating that there is a compilation error. The error message looks like: ... Lots of similar errors ... output/mp4.c:297: warning: implicit declaration of function ‘gf_isom_add_sample’ output/mp4.c:297: error: ‘mp4_hnd_t’ has no member named ‘p_file’ output/mp4.c:297: error: ‘mp4_hnd_t’ has no member named ‘i_track’ output/mp4.c:297: error: ‘mp4_hnd_t’ has no member named ‘i_descidx’ output/mp4.c:297: error: ‘mp4_hnd_t’ has no member named ‘p_sample’ output/mp4.c:299: error: ‘mp4_hnd_t’ has no member named ‘p_sample’ output/mp4.c:300: error: ‘mp4_hnd_t’ has no member named ‘i_numframe’ I've tried different releases. I've installed gpac, ffmpeg, and tried numerous tips from the net. But still can't get it to work. The reason I want it with mp4 output is because I want to use ffmpeg to create mp4 files encoded with x264. I'm running Ubuntu Server 9.10 32 bits.

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• How to calculate a RTOS task's time

  - by Adnan

  Hello all, I have written a code in c for Arm7 using RTOS. There are multiple tasks who's priority is set to same level. So the tasks executes on round-robin base. There is an exception that one task (Default) has set to lower priority then the other task in rtos. So that if no task is running, the default or lower priority task runs. Now i want to calculate the exact total timing (time duration) for that default task runs. Can any one give some idea what to do .... and how to do in code.. Regards Dani

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• Date sorting with ls

  - by nearly_lunchtime

  How can I sort the output of ls by last modified date?

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• Upgrading mysql from 4.1.22 to 5.0

  - by Arsenal

  Hi, I'm trying to upgrade our company's 4.1.22 version of MySQL to 5. I'm using sudo yum --enablerepo=centosplus upgrade mysql* but keep getting an error of conflicted files with the 4.1 version. Does that mean there really isn't any other way than uninstalling 4.1 and installing 5.0? I have read that using the yum upgrade command should work however... Thanks in advance!

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• Need help again altering output of script

  - by Aaron

  wget --output-document=- http://runescape.com/title.ws 2>/dev/null \ | grep PlayerCount \ | head -1l \ | sed 's/^[^>]*>//' \ | sed "s/currently.*$/$(date '+%m\/%d\/%Y %H:%m:%S')/" \ | cut -d">" -f 3,4 \ | sed 's/<\/span>//' \ | awk '{print $3, $4, $1, $2}' Will output: 03/19/2012 18:03:58 123,822 people Would anyone be able to help me rewrite this so the output looks like: 03/19/2012 18:03:58,123822,people I need it this way because when I import it into googledocs, everything with a comma gets separated. Thanks if you help!

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• Fail2Ban - Log to mysql

  - by user319660

  Hi! We have a few servers with SSH public (using sFTP). Obviously, the attacks ar too many. We want put the banned logs into a MySQL DB for make stats and etc. Have anyone tryied this? Thanks

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• SWT: problems with clicking button after using setEnabled() on Linux

  - by Laimoncijus

  Hi, I have a strange case with SWT and Button after using setEnabled() - seems if I disable and enable button at least once - I cannot properly click with mouse on it anymore... Already minify code to very basic: import org.eclipse.swt.SWT; import org.eclipse.swt.events.SelectionEvent; import org.eclipse.swt.events.SelectionListener; import org.eclipse.swt.layout.GridLayout; import org.eclipse.swt.widgets.Button; import org.eclipse.swt.widgets.Display; import org.eclipse.swt.widgets.Shell; public class TestButton { public TestButton() { Display display = new Display(); Shell shell = new Shell(display); GridLayout mainLayout = new GridLayout(); shell.setLayout(mainLayout); shell.setSize(100, 100); Button testButton = new Button(shell, SWT.PUSH); testButton.addSelectionListener(new TestClickListener()); testButton.setText("Click me!"); //testButton.setEnabled(false); //testButton.setEnabled(true); shell.open(); while (!shell.isDisposed()) { if (!display.readAndDispatch()) display.sleep(); } display.dispose(); } class TestClickListener implements SelectionListener { @Override public void widgetDefaultSelected(SelectionEvent e) { } @Override public void widgetSelected(SelectionEvent e) { System.out.println("Click!"); } } public static void main(String[] args) { new TestButton(); } } When I keep these 2 lines commented out - I can properly click on a button and always get "Click!" logged, but if I uncomment them - then I can't click on button properly with mouse anymore - button visually seems to be clicked, but nothing is logged... Am I doing something wrong here? Or maybe it's some kind of bug on Linux platform? Because on Mac running the same code I never experienced such problems... Thanks for any hint! P.S. Running code on Ubuntu 9.10, Gnome + Compiz, Sun Java 1.6.0.16

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• Uninstall Git completely on Ubuntu?

  - by Millisami

  I installed Git on Ubuntu Lucid (latest) manually as following. cd ~/tmp wget http://kernel.org/pub/software/scm/git/git-1.7.0.6.tar.gz tar -xzvf git-1.7.0.6.tar.gz cd git-1.7.0.6.tar.gz ./configure sudo make sudo make install Now, how can I completely uninstall it?

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• Error in unzipping a file from a python script running as daemon

  - by Fedrick

  I am getting an error whenever i try to run following unzip command from a python script which is running as a daemon Command : unzip abcd.zip /dev/null Error End-of-central-directory signature not found$ a zip file, or it constitutes one disk of a multi-part archive. In the latter case the central directory and zipfile comment will be found on the last disk(s) of this archive unzip: cannot find zipfile directory in one of abcd.zip$ abcd.zip.zip, and cannot find abcd.zip.ZIP, period. Could anyone help me in this regard? Thanks in advance.

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• Converting FASTQ to FASTA with SED/AWK

  - by neversaint

  I have a data in that always comes in block of four in the following format (called FASTQ): @SRR018006.2016 GA2:6:1:20:650 length=36 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGN +SRR018006.2016 GA2:6:1:20:650 length=36 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!+! @SRR018006.19405469 GA2:6:100:1793:611 length=36 ACCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC +SRR018006.19405469 GA2:6:100:1793:611 length=36 7);;).;);;/;*.2>/@@7;@77<..;)58)5/>/ Is there a simple sed/awk/bash way to convert them into this format (called FASTA): >SRR018006.2016 GA2:6:1:20:650 length=36 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGN >SRR018006.19405469 GA2:6:100:1793:611 length=36 ACCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC In principle we want to extract the first two lines in each block-of-4 and replace @ with >.

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