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  • problem with hierarchical clustering in Python

    - by user248237
    I am doing a hierarchical clustering a 2 dimensional matrix by correlation distance metric (i.e. 1 - Pearson correlation). My code is the following (the data is in a variable called "data"): from hcluster import * Y = pdist(data, 'correlation') cluster_type = 'average' Z = linkage(Y, cluster_type) dendrogram(Z) The error I get is: ValueError: Linkage 'Z' contains negative distances. What causes this error? The matrix "data" that I use is simply: [[ 156.651968 2345.168618] [ 158.089968 2032.840106] [ 207.996413 2786.779081] [ 151.885804 2286.70533 ] [ 154.33665 1967.74431 ] [ 150.060182 1931.991169] [ 133.800787 1978.539644] [ 112.743217 1478.903191] [ 125.388905 1422.3247 ]] I don't see how pdist could ever produce negative numbers when taking 1 - pearson correlation. Any ideas on this? thank you.

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  • If you could take one computer science course now, what would it be?

    - by HenryR
    If you had the opportunity to take one computer science course now, and as a result significantly increase your knowledge in a subject area, what would it be? Undergraduate or graduate level. Compilers? Distributed algorithms? Concurrency theory? Advanced operating systems? Let me know why. (Note that I appreciate this isn't a far fetched scenario - but time and inertia might be preventing people from taking the course or reading the book or whatever)

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  • Ideas for Computer Science related Microteaching

    - by Roman Stolper
    This semester, I will be a TA for an introductory computer science course at my university. As part of TA training, I'll be doing something called Microteaching, which is where I teach for 5-7 minutes in front of a small audience (4-5 people) and I am reviewed on my teaching style. Among being critiqued on my personal things like confidence and eye contact, I will be critiqued on how well I know the subject material, as well as how interesting it is to the audience. So my question is: Can you offer me any suggestions of computer science related topics that: I can begin and finish teaching in a span of 5-7 minutes Are fun to learn about Are accessible to a general engineering (but not necessarily computer science) audience Some topics I have considered: Teaching how to write Hello World in some simple language Introducing a synchronization problem like dining philosophers

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  • Programming exercises in Java inheritance for intern

    - by Tenner
    I work for a small software development team, working primarily in Java, for a very large company. Our new intern showed up sight-unseen (not uncommon in my company). He has some C++ experience but no Java. Worse, he's never worked with inheritance in C++. Our code has a great deal of abstraction and a heavy reliance on inheritance. We need to get him up to speed as quickly as possible. Of course the rest of the team is busy, and so we can't take the time out of our day to teach a one-student 200-level CS course. Instead, I'd like to give him an actual programming project to work on which highlights how classes, interfaces, method overrides, etc. work. I've had him look at Project Euler, but most of the solutions end up being procedural, and not object-oriented programs. Do any of you have any somewhat-straightforward (and relatively quick) projects which you would give to an intern in this situation? Or, any recent (or current) students have a school project they'd be willing to share? Anyone else had this experience?

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  • What Conferences would you recommend for a UI / Frontend Web Developer in the next 6 months?

    - by rsturim
    Hello, I'm looking for a strong conference(s) to attend in the next 6 months. I may be able to attend one or two. I'm looking for something surrounding Frontend Web Development -- web standards, CSS3, html5, javascript, UX, and usability are strong interests of mine. I'm also starting to consider diving deep into designing for Mobile devices. I've discovered these 2 conferences so far -- they look very good -- but am I missing anything HUGE and/or obvious? An Event Apart - Wash DC (http://aneventapart.com/2010/dc/) Web Directions North - Altanta (http://north.webdirections.org/) Thoughts?

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  • What to Learn: Rails 1.2.4 -> Rails 3

    - by Saterus
    I've recently convinced my management that our outdated version of Rails is slowing us down enough to warrant an upgrade. The approach we're taking is to start a fresh project with current technology rather than a painful upgrade. Our requirements for the project have changed and this will be much easier. The biggest problem is actually that my knowledge of Rails is out of date. I've dealt only with Rails 1.2.4 while the rest of the world has moved on long ago. What topics have I missed by being buried in my work instead of keeping up with the current Rails fashion? I'm hesitant to dig through blogs at random because I'm not sure how much has changed between the intervening versions of Rails. It's no use to learn Rails 2.1-2.3 specific stuff that is no longer useful for Rails 3.

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  • Multiplying Block Matrices in Numpy

    - by Ada Xu
    Hi Everyone I am python newbie I have to implement lasso L1 regression for a class assignment. This involves solving a quadratic equation involving block matrices. minimize x^t * H * x + f^t * x where x 0 Where H is a 2 X 2 block matrix with each element being a k dimensional matrix and x and f being a 2 X 1 vectors each element being a k dimension vector. I was thinking of using nd arrays. such that np.shape(H) = (2, 2, k, k) np.shape(x) = (2, k) But I figured out that np.dot(X, H) doesn't work here. Is there an easy way to solve this problem? Thanks in advance.

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  • Teaching a mainframe COBOL programmer Java?

    - by Jared
    I’m trying to help someone learn Java who’s only programming experience is COBOL on the mainframe. I was wondering if anyone knew any good resources for object oriented concepts. I learned how to program with C++ so just understand the theory behind basic OOP. I’m more concerned about a way to get the basic concepts across, such as encapsulation and inheritance rather then Java syntax. I think it’d be better to teach the concepts of OOP then a language rather then trying to cram both a new language and paradigm in at the same time. Does anyone have any resources or ideas that could help this person learn OOP followed by Java?

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  • Generic documentation guide-lines for implementation details

    - by mgj
    Hi..:) For documentation and presentation purposes, we often find professionals/students creating SRS, coding guidelines etc. for these things there is some kind of a checklist which one could use to appropriately match what could relate to a specific case and accordingly one does a documentation for each. On those grounds could you please give me some sort of a checklist( any points/guidelines) one could use for going about Implementation( in the form of Implementation Details) in Python and C++ . Although this might sound specific as the query is "Implementation Details" and is different for different cases as one goes about the REAL implementation, I just want a SET of guidelines one should follow ( Preferably In Python, C++ specific, even for any other language is Welcome) if this( Implementation Details ) has to also be documented or presented. Hope the question is clear, I am sorry if it still sounds ambiguous, I guess this is the best I could do to frame my query. Thank you for your time...:)

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  • Advice on a simple Windows Form

    - by Austin Hyde
    I have a VERY simple windows form that the user uses to manage "Stores". Each store has a name and number, and is kept in a corresponding DB table. The form has a listbox of stores, an add button that creates a new store, a delete button, and an edit button. Beside those I have text boxes for the name and number, and save/cancel buttons. When the user chooses a store from the list box, and clicks 'edit', the textboxes become populated and save/cancel become active. When the user clicks 'add', I create a new Store, add it to the listbox, activate the textboxes and save/cancel buttons, then commit it to the database when the user clicks 'save', or discards it when the user clicks 'cancel'. Right now, my event system looks like this (in psuedo-code. It's just shorter that way.) add->click: store = new Store() listbox.add(store) populateAndEdit(store) delete->click: store = listbox.selectedItem db.deleteOnSubmit(store) listbox.remove(store) db.submit() edit->click: populateAndEdit(listbox.selectedItem) save->click: parseAndSave(listbox.selectedItem) db.submit() disableTexts() cancel->click: disableTexts() The problem is in how I determine if we are inserting a new Store, or updating an existing one. The obvious solution to me would be to make it a "modal" process - that is, when I click edit, I go into edit mode, and the save button does things differently than if I were in add mode. I know I could make this more MVC-like, but I don't really think this simple form merits the added complexity. I'm not very experienced with winforms, so I'm not sure if I even have the right idea for how to tackle this. Is there a better way to do this? I would like to keep it simple, but usable.

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  • How can I try a new language or framework without installing it?

    - by flamingLogos
    With so many languages and frameworks that exist, and with new ones appearing all the time, I don't have the time to download, install, and configure each one to evaluate it. In the past I've run across webapps that allow one to write or paste code into a window, and see the results in realtime in the browser, usually in a tutorial setting. What are your favorite sandbox sites for a given technology? Edit: @fretj provided the link to the excellent Google Code Playground (+1 upvote), but I thought that it was just for experimenting with Google's own apps (Search, Maps, Earth, Language, etc). But it turns out that it contains a few hidden gems: In addition to their apps, you can try out the many Javascript libraries that they host including jQuery, jQuery UI, MooTools, Dojo, and Prototype Scriptaculous. They're all hidden under the Libraries category in the "Pick an API" box. I overlooked the category because I thought it was for an app called Google Libraries. There's also a Javascript category for Javascript itself.

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  • Does this incorporate JavaScript closures?

    - by alex
    In trying to learn JavaScript closures, I've confused myself a bit. From what I've gathered over the web, a closure is... Declaring a function within another function, and that inner function has access to its parent function's variables, even after that parent function has returned. Here is a small sample of script from a recent project. It allows text in a div to be scrolled up and down by buttons. var pageScroll = (function() { var $page, $next, $prev, canScroll = true, textHeight, scrollHeight; var init = function() { $page = $('#secondary-page'); // reset text $page.scrollTop(0); textHeight = $page.outerHeight(); scrollHeight = $page.attr('scrollHeight'); if (textHeight === scrollHeight) { // not enough text to scroll return false; }; $page.after('<div id="page-controls"><button id="page-prev">prev</button><button id="page-next">next</button></div>'); $next = $('#page-next'); $prev = $('#page-prev'); $prev.hide(); $next.click(scrollDown); $prev.click(scrollUp); }; var scrollDown = function() { if ( ! canScroll) return; canScroll = false; var scrollTop = $page.scrollTop(); $prev.fadeIn(500); if (scrollTop == textHeight) { // can we scroll any lower? $next.fadeOut(500); } $page.animate({ scrollTop: '+=' + textHeight + 'px'}, 500, function() { canScroll = true; }); }; var scrollUp = function() { $next.fadeIn(500); $prev.fadeOut(500); $page.animate({ scrollTop: 0}, 500); }; $(document).ready(init); }()); Does this example use closures? I know it has functions within functions, but is there a case where the outer variables being preserved is being used? Am I using them without knowing it? Thanks Update Would this make a closure if I placed this beneath the $(document).ready(init); statement? return { scrollDown: scrollDown }; Could it then be, if I wanted to make the text scroll down from anywhere else in JavaScript, I could do pageScroll.scrollDown(); I'm going to have a play around on http://www.jsbin.com and report back

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  • Suggest me which web development technology i gotta use?

    - by shyam-daniel
    I am a newbie to the web application development. I have to start with a Framework which will make me grow up higher in my career. So please suggest which technology i have to choose? Lot of technologies for web development is articulating in this field like PHP,JSP,Stuts,JSF,Flex,ColdFusion etc. Give me some suggestions to how to start?

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  • Is C++ (one of) the best language to learn at first

    - by AlexV
    C++ is one of the most used programming language in the world since like 25+ years. My first job as programmer was in C++ and I coded in C++ everyday for nearly 4 years. Now I do mostly PHP, but I will forever cherish this C++ background. C++ has helped me understand many "under the hood" features/behaviors/restrictions of many other (and different) programming languages like PHP and Delphi. I'm a full time programmer for 6+ years now and since I have a quite varied programming background I often get questions by "newbies" as where to start to become a "good" programmer. I think C++ is one of the best language to start with because it gives you a real usefull experience that will last and will teach you how things work under the hood. It's not the easier one to learn for a newbie, but in my opinion it's one that will reward in the long term. I would like to know your opinion on this matter to add to my arguments when I guide "newbies". After this introduction, here's my question : Is C++ (one of) the best language to learn at first for you. Since it's subjective, I've marked this question as community wiki. EDIT: This question is not about why Java (or C# or any other language) is better than C++ to start with, it's about what's make C++ a good choice or not a good choice to learn as one of your firsts languages. For example, for me C++ made me understand how the memory works. Now today in many languages everything is managed by the garbadge collector and some people don't even know that. I'm glad I know how it works underneath and I think it can help you to write better code.

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  • What is the difference between causal models and directed graphical models?

    - by Neil G
    What is the difference between causal models and directed graphical models? or: What is the difference between causal relationships and directed probabilistic relationships? or, even better: What would you put in the interface of a DirectedProbabilisticModel class, and what in a CausalModel class? Would one inherit from the other? Collaborative solution: interface DirectedModel { map<Node, double> InferredProbabilities(map<Node, double> observed_probabilities, set<Node> nodes_of_interest) } interface CausalModel: DirectedModel { bool NodesDependent(set<Node> nodes, map<Node, double> context) map<Node, double> InferredProbabilities(map<Node, double> observed_probabilities, map<Node, double> externally_forced_probabilities, set<Node> nodes_of_interest) }

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  • Java certification roadMap

    - by NoProblemBabe
    I am a .net programmer for sometime, and I was thinking about getting a Java certification, but unlike .Net, Java is a mystery to me. What are good certification books? What is the roadmap for the certifications? Is that the best path, or the only path? http://in.sun.com/training/certification/java/ Thank you very much

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  • Best C# Tutorials for a newbie?

    - by N00b
    Were there any awesome C# tutorials you found that helped you learn it? Or any books that you thought were particularly successful? Any that should be avoided? UPDATE: Tons of good answers, thank you all! To clarify the earlier question, hobbyist with only light programming experience previous. Working through online tutorials currently, probably going to pick up Head First C#.

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  • What are good resources to learn Coldfusion for a job application...

    - by NoMoreZealots
    The job title is "ColdFusion Developer." I have bit's HTML and Javascripting experience, but mostly have worked in the "harder" languages such as C and C++ with occational flurries of assembly. I'm currently employeed, but in the current job climate I figure it can't hurt to be looking around and applying for other positions. Plus according to the friend who sent me the job posting, it is suppose to pay "very well." They left my office to work for this company themself so I figure it's a reasonable evaluation of the company. I don't know if there are any free tools that I could use to get my feet wet and bone up for an interview, or what sort of literature is decent for the ColdFusion. Plus any ideas on how to tune a resume for it would also be helpful.

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  • Ask StackOverFlow : Canny a LightWeight Authorization library in Java

    - by eltados
    In the course of my work i need to develop an authorization engine ( i'm already authenticated and i check access of a user to an action ) in order to store all the authorization logic inside a same place and be able to reuse it and i have created the mini library. http://github.com/eltados/canny (updated) what do you think about it? What are the limits of my approch ? Do you understand the benefit or it? Is there any lightweight Authorization engine library i could have a look at? I had a look at spring security and it does not really answer my requirement. The main idea is that i want to be able to reuse the same code to controll access in the controllers and the views.

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  • How can I help fellow students struggling in programming classes?

    - by David Barry
    I'm a computer science student finishing up my second semester of programming classes. I've enjoyed them quite a bit, and learned a lot, but it seems other students are struggling with the concepts and assignments more than I am. When an assignment is due, the inevitable group email comes out the day or two before with people needing some help either with a specific part of the problem, or sometimes people just seem to have a hard time knowing where to start. I'd really like to be able to help out, but I have a hard time thinking of the right way to give them help without giving them the answer. When I'm having trouble understanding a concept, a code snippet can go along way to helping me, but at the same time if it makes a lot of sense, it can be difficult to think of another way to go about it. Plus the Academic Integrity section of each assignment is always looming overhead warning against sharing code with others. I've tried using pseudo code to help give others an idea on program flow, leaving them to figure out how to implement certain aspects of it, but I didn't get too much feedback and don't know how much it actually helped them out, or if it just confused them further. So I'm basically looking to see if anyone has experience with this, or good ways that I can help out other students to nudge them in the right direction or help them think about the problem in the right way.

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  • Which sites/blog would you prefer to learn advanced css techniques

    - by metal-gear-solid
    Which sites/blog (not book) would you prefer to learn advanced CSS techniques (not basic)? Site which updates new only css and pure css (no client side and server side) techniques, articles on daily or weekly basis. Or you can suggest any pure css rss feeds. My aim is to learn one new technique/trick daily. I know some well known blogs but do you know any other not well known but good blogs/sites. I want to know some hidden treasures.

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  • Reading for a junior ASP.NET C# web developer.

    - by William
    We have a new junior developer and I want him to start reading up on various topics in order to broaden his horizons. I am trying to group these into "areas" so that he can focus on getting a good general knowledge in on subject before moving on to another one. So far I have the following areas: Asp.net with C#, Webforms T-SQL CSS Can you provide good examples of reading material (preferably e-books so I can get them quicker) for him in each of those areas. Other areas and blogs to follow are also welcome.

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