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  • How can I make the output from tapply() into a data.frame

    - by James Thompson
    I have a data.frame in R that looks like this: score rms template aln_id description 1 -261.410 4.951 2f22A.pdb 2F22A_1 S_00001_0000002_0 2 -231.987 21.813 1wb9A.pdb 1WB9A_4 S_00002_0000002_0 3 -263.722 4.903 2f22A.pdb 2F22A_3 S_00003_0000002_0 4 -269.681 17.732 1wbbA.pdb 1WBBA_6 S_00004_0000002_0 5 -258.621 19.098 1rxqA.pdb 1RXQA_3 S_00005_0000002_0 6 -246.805 6.889 1rxqA.pdb 1RXQA_15 S_00006_0000002_0 7 -281.300 16.262 1wbdA.pdb 1WBDA_11 S_00007_0000002_0 8 -271.666 4.193 2f22A.pdb 2F22A_2 S_00008_0000002_0 9 -277.964 13.066 1wb9A.pdb 1WB9A_5 S_00009_0000002_0 10 -261.024 17.153 1yy9A.pdb 1YY9A_2 S_00001_0000003_0 I can calculate summary statistics on the data.frame like this: > tapply( d$score, d$template, mean ) 1rxqA.pdb 1wb9A.pdb 1wbbA.pdb 1wbdA.pdb 1yy9A.pdb 2f22A.pdb -252.7130 -254.9755 -269.6810 -281.3000 -261.0240 -265.5993 Is there an easy way that I coerce this output back into a data.frame? I'd like for it to have these two columns: d$template mean I love tapply, but right now I'm cutting and pasting the results from tapply into a text file and hacking it up a bit to get the summary statistics that I want with appropriate names. This feels very wrong, and I'd like to do something better!

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  • How to structure this Symfony web project?

    - by James William
    I am new to Symfony and am not sure how to best structure my web project. The solution must accommodate 3 use cases: Public access to www.mydomain.com for general use Member only access to member.mydomain.com Administrator access to admin.mydomain.com All three virtual hosts point to the Symfony /web directory Questions: Is this 3 separate applications in my Symfony project (e.g. "frontend", "backend" and "admin" or "public", "member", "admin")? Is this a good approach if there is to be some duplicate code (e.g. generating a member list would be common across all 3 applications, but presented differently)? How would I route to the various applications based on the subdomain when a user accesses *.mydomain.com? Where in Symfony should this routing logic be placed? Or, is this one application with modules for each of the above use cases? EDIT: I do not have access to httpd.conf in apache to specify a default page for virtual hosts. I can only specify a directory for each subdomain using the hostin provider's cPanel.

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  • how to execute any function in jquery after few seconds on the click of any link

    - by james Bond
    I have struts2 jquery grid where on click of a row I am calling a jQuery function for performating a struts2 action. My code is running fine. I want to perform my jQuery function after delay of a few seconds. How can I do this? <script type="text/javascript"> //assume this code is working fine on rowselect from my jquery grid, New Updation in it is "i want to execute or load the url after few seconds" $(function(){ $.subscribe('rowselect', function(event,data) { var param = (event.originalEvent.id); $("#myAdvanceDivBoxx").load('<s:url action='InsertbooksToSession' namespace='/admin/setups/secure/jspHomepage/bookstransaction'/>'+"?bid="+event.originalEvent.id); }); }); </script> What i tried is the below code but am unable to get the output which i am looking for: <script type="text/javascript"> $(function(){ $.subscribe('rowselect', function(event,data) { var param = (event.originalEvent.id); $("#myAdvanceDivBoxx").load('<s:url action='InsertbooksToSession' namespace='/admin/setups/secure/jspHomepage/bookstransaction'/>'+"?bid="+event.originalEvent.id); }).delay(9000); }); </script>

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  • What is a good generic sibling control Javascript communication strategy?

    - by James
    I'm building a webpage that is composed of several controls, and trying to come up with an effective somewhat generic client side sibling control communication model. One of the controls is the menu control. Whenever an item is clicked in here I wanted to expose a custom client side event that other controls can subscribe to, so that I can achieve a loosely coupled sibling control communication model. To that end I've created a simple Javascript event collection class (code below) that acts as like a hub for control event registration and event subscription. This code certainly gets the job done, but my question is is there a better more elegant way to do this in terms of best practices or tools, or is this just a fools errand? /// Event collection object - acts as the hub for control communication. function ClientEventCollection() { this.ClientEvents = {}; this.RegisterEvent = _RegisterEvent; this.AttachToEvent = _AttachToEvent; this.FireEvent = _FireEvent; function _RegisterEvent(eventKey) { if (!this.ClientEvents[eventKey]) this.ClientEvents[eventKey] = []; } function _AttachToEvent(eventKey, handlerFunc) { if (this.ClientEvents[eventKey]) this.ClientEvents[eventKey][this.ClientEvents[eventKey].length] = handlerFunc; } function _FireEvent(eventKey, triggerId, contextData ) { if (this.ClientEvents[eventKey]) { for (var i = 0; i < this.ClientEvents[eventKey].length; i++) { var fn = this.ClientEvents[eventKey][i]; if (fn) fn(triggerId, contextData); } } } } // load new collection instance. var myClientEvents = new bsdClientEventCollection(); // register events specific to the control that owns it, this will be emitted by each respective control. myClientEvents.RegisterEvent("menu-item-clicked"); Here is the part where this code above is consumed by source and subscriber controls. // menu control $(document).ready(function() { $(".menu > a").click( function(event) { //event.preventDefault(); myClientEvents.FireEvent("menu-item-clicked", $(this).attr("id"), null); }); }); <div style="float: left;" class="menu"> <a id="1" href="#">Menu Item1</a><br /> <a id="2" href="#">Menu Item2</a><br /> <a id="3" href="#">Menu Item3</a><br /> <a id="4" href="#">Menu Item4</a><br /> </div> // event subscriber control $(document).ready(function() { myClientEvents.AttachToEvent("menu-item-clicked", menuItemChanged); myClientEvents.AttachToEvent("menu-item-clicked", menuItemChanged2); myClientEvents.AttachToEvent("menu-item-clicked", menuItemChanged3); }); function menuItemChanged(id, contextData) { alert('menuItemChanged ' + id); } function menuItemChanged2(id, contextData) { alert('menuItemChanged2 ' + id); } function menuItemChanged3(id, contextData) { alert('menuItemChanged3 ' + id); }

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  • Versioning CommonAssemblyInfo.cs and MSBuild

    - by James Thigpen
    So I have a CommonAssemblyInfo.cs linked into all the projects in my solution and is dynamically generated by my rake/albacore scripts which is not checked into source control. I also have a CommonAssemblyInfo.cs.local for use when there is no ruby available, mainly to be used by devs. Is it possible to have a msbuild task or something that runs before any of the other project compilation that will copy CommonAssemblyInfo.cs.local to CommonAssemblyInfo.cs before trying to compile my solution? I hate having to have a command you have to just know about and type in order to open and buidl the solution in Visual Studio.

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  • Multiple resultsets from Oracle in Odp.net,without refcursors

    - by James L
    SQL Server is able to return the results of multiple queries in a single round-trip, e.g: select a, b, c from y; select d, e, f from z; Oracle doesn't like this syntax. It is possible to use reference cursors, like this: begin open :1 for select count(*) from a; open :2 for select count(*) from b; end; However, you incur a penalty in opening/closing cursors and you can hold database locks for an extended period. What I'd like to do is retrieve the results for these two queries in one shot, using Odp.net. Is it possible?

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  • How do you get the ID of a control in ASP.NET

    - by James
    I am attempting to loop through an array of numbers, match them to the checkbox they they are associated with, and checkmark that box. My checkbox is set up like: <input type="checkbox" runat="server" id="someID" name="somename" value="1234" /> My code when the page loads currently looks like: foreach (string interest in interests_Var){ foreach (var c in Page.Controls) { } } interests_Var is my array containing different numbers. We'll assume one of them is 1234. While looping through the page controls, I want to compare the value of the control to my number. If it equals my number, I want to then apply the attribute checked="checked". I'm assuming I have to find the ID of the control I am using, then use that ID to add a new attribute. Or is there a way I can add the attribute using the c variable? I'm not dead set on this setup, so if you know a better way, I'm all ears. Thanks for any help and suggestions.

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  • CakePHP HABTM Filtering

    - by James Haigh
    Hi, I've got two tables - users and servers, and for the HABTM relationship, users_servers. Users HABTM servers and vice versa. I'm trying to find a way for Cake to select the servers that a user is assigned to. I'm trying things like $this->User->Server->find('all'); which just returns all the servers, regardless of whether they belong to the user. $this->User->Server->find('all', array('conditions' => array('Server.user_id' => 1))) just gives an unknown column SQL error. I'm sure I'm missing something obvious but just need someone to point me in the right direction. Thanks!

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  • Why use buffers to read/write Streams

    - by James Hay
    Following reading various questions on reading and writing Streams, all the various answers define something like this as the correct way to do it: private void CopyStream(Stream input, Stream output) { byte[] buffer = new byte[16 * 1024]; int read; while ((read = input.Read(buffer, 0, buffer.Length)) > 0) { output.Write(buffer, 0, read); } } Two questions: Why read and write in these smaller chunks? What is the significance of the buffer size used?

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  • Blackberry RichTextField preferred height during layout

    - by James Veenstra
    This is using the Backberry JDK (5.0 if needed). I have a custom Manager that contains a RichTextField. I want the height of the field to vary by the amount of text in the RichTextField. The sublayout code looks like this (rtf is a RichTextField object): protected void sublayout(int width, int height) { int h = rtf.getPreferredHeight(); setExtent(Display.getWidth(), h); layoutChild(rtf, Display.getWidth(), h); setPositionChild(rtf, 0, 0); setExtent(Display.getWidth(), h); } The call to rtf.getPreferredHeight always returns the same value, no matter how much text (and therefore how many lines on the screen). Any clues on how to get the height of a RichTextField when the content and width are known?

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  • Sum up values in SQL once all values are available

    - by James Brown
    I have events flowing into a MySQL database and I need to group and sum the events to transactions and store away into another table. The data looks like: +----+---------+------+-------+ | id | transid | code | value | +----+---------+------+-------+ | 1 | 1 | b | 12 | | 2 | 1 | i | 23 | | 3 | 2 | b | 34 | | 4 | 1 | e | 45 | | 5 | 3 | b | 56 | | 6 | 2 | i | 67 | | 7 | 2 | e | 78 | | 8 | 3 | i | 89 | | 9 | 3 | i | 90 | +----+---------+------+-------+ The events arrive in batches and I would like to create the transaction by summing up the values for each transid, like: select transid, sum(value) from eventtable group by transid; but only after all the events for that transid have arrived. That is determined by the event with the code e (b for the beginning, e for the end and i for varying amount of intermediates). Being a novice in SQL, how could I implement the requirement for the existance of the end code before the summing?

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  • Facebook dialog appears but always says "An error has occurred"

    - by Conor James
    <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" xmlns:fb="http://www.facebook.com/2008/fbml"> ... <head> ... <script src="http://connect.facebook.net/en_US/all.js#xfbml=1"></script> </head> <body> <div id="fb-root"></div> <fb:like id="fb-like" href="http://www.example.com" layout="button_count" show_faces="false" width="100"></fb:like> ... myscript.js: FB.ui( { method: 'stream.publish', message: 'getting educated about Facebook Connect', attachment: { name: 'Connect', caption: 'The Facebook Connect JavaScript SDK', description: ( 'A small JavaScript library that allows you to harness ' + 'the power of Facebook, bringing the user\'s identity, ' + 'social graph and distribution power to your site.' ), href: 'http://github.com/facebook/connect-js' }, action_links: [ { text: 'Code', href: 'http://github.com/facebook/connect-js' } ], user_message_prompt: 'Share your thoughts about Connect' }, function(response) { if (response && response.post_id) { alert('Post was published.'); } else { alert('Post was not published.'); } } ); I have Facebook like button on my page which works fine. But when I call the FB.ui method above from my JavaScript source, the Facebook dialog pops up but displays this error message: **An error occurred. Please try again later.** This has happened repeatedly for two days since I started trying to implement it. Not a very helpful error message. Any idea what might cause it or how to narrow down the problem?

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  • Concatenate text files with Windows command line, dropping leading lines

    - by James
    I need to concatenate some relatively large text files, and would prefer to do this via the command line. Unfortunately I only have Windows, and cannot install new software. type file1.txt file2.txt > out.txt allows me to almost get what I want, but I don't want the 1st line of file2.txt to be included in out.txt. I have noticed that more has the +n option to specify a starting line, but I haven't managed to combine these to get the result I want. I'm aware that this may not be possible in Windows, and I can always edit out.txt by hand to get rid of the line, but is there a simple way of doing it from the command line?

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  • How do you check to see if a variable has changed every second or less in objective c?

    - by James
    I am using an if statement to check the value of a BOOLEAN when i click on a button. When the button is clicked if the value is false i want to display a UIActivityIndicator and if the value is true i want to push the new view. I can do this fine but i want the view to change automatically when the BOOLEAN Becomes true if the user has already clicked the button. So my question is how do you check to see if a value has changed everysecond or less?

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  • Problem finding the difference in days between two dates

    - by James
    I have been using a tidy little routine that I found here to calculate the difference in days between two dates in AS3. I am getting some strange results and I am wondering if any of you inter-codal-mega-lords can shed some light? Why is Q1 of 2010 coming up one day short, when in all other cases the routine is performing fine? Many thanks in advance to anyone who can help! function countDays( startDate:Date, endDate:Date ):int { var oneDay:int = 24*60*60*1000; // hours*minutes*seconds*milliseconds var diffDays:int = Math.abs((startDate.getTime() - endDate.getTime())/(oneDay)); return diffDays; } countDays( new Date( 2010, 00, 01 ), new Date( 2011, 00, 01 ) ); // returns 365, which is correct countDays( new Date( 2010, 00, 01 ), new Date( 2010, 03, 01 ) ); // returns 89, which is 1 day short countDays( new Date( 2010, 03, 01 ), new Date( 2010, 06, 01 ) ); // returns 91, which is correct countDays( new Date( 2010, 06, 01 ), new Date( 2010, 09, 01 ) ); // returns 92, which is correct countDays( new Date( 2010, 09, 01 ), new Date( 2011, 00, 01 ) ); // returns 92, which is correct

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  • Copy of Access mdb database being updated by live database

    - by James
    I'm trying to compute statistics for data held in an Access .mdb database. In order to avoid interfering with the live database, I'm working from a copy which I made by simply using copy-paste in Windows Explorer. The copy resides in the same directory, but with a different name. I'm using R and RODBC to connect to the copy of the file. The strange thing is that new data that is being updated on the original live database is appearing in my queries. This is despite the file timestamps of the copy not changing at all. It is also causing some slowdown in the live database. My understanding is that the .mdb files are standalone, or is this not the case? Should I have copied the database in a different way?

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  • Java BufferedImage increase width

    - by James Moore
    Hello, I have managed to load in an image using: BufferedImage image = ImageIO.read(out); and place text over it however, I want the text to appear next to the image. How can I increase the image width on the right to allow for space for the text to be drawn on. Or do I have to create a new empty image and insert the existing one? Thanks

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  • sqlite3.OperationalError: database is locked - non-threaded application

    - by James C
    Hi, I have a Python application which throws the standard sqlite3.OperationalError: database is locked error. I have looked around the internet and could not find any solution which worked (please note that there is no multiprocesses/threading going on, and as you can see I have tried raising the timeout parameter). The sqlite file is stored on the local hard drive. The following function is one of many which accesses the sqlite database, and runs fine the first time it is called, but throws the above error the second time it is called (it is called as part of a for loop in another function): def update_index(filepath): path = get_setting('Local', 'web') stat = os.stat(filepath) modified = stat.st_mtime index_file = get_setting('Local', 'index') connection = sqlite3.connect(index_file, 30) cursor = connection.cursor() head, tail = os.path.split(filepath) cursor.execute('UPDATE hwlive SET date=? WHERE path=? AND name=?;', (modified, head, tail)) connection.commit() connection.close() Many thanks.

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