pyplot: really slow creating heatmaps
- by cvondrick
I have a loop that executes the body about 200 times. In each loop iteration, it does a sophisticated calculation, and then as debugging, I wish to produce a heatmap of a NxM matrix. But, generating this heatmap is unbearably slow and significantly slow downs an already slow algorithm.
My code is along the lines:
import numpy
import matplotlib.pyplot as plt
for i in range(200):
matrix = complex_calculation()
plt.set_cmap("gray")
plt.imshow(matrix)
plt.savefig("frame{0}.png".format(i))
The matrix, from numpy, is not huge --- 300 x 600 of doubles. Even if I do not save the figure and instead update an on-screen plot, it's even slower.
Surely I must be abusing pyplot. (Matlab can do this, no problem.) How do I speed this up?
