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  • Collaborative Filtering Program: What to do for a Pearson Score When There Isn't Enough Data

    - by Mike
    I'm building a recommendation engine using collaborative filtering. For similarity scores, I use a Pearson correlation. This is great most of the time, but sometimes I have users that only share a 1 or 2 fields. For example: User 1{ a: 4 b: 2 } User 2{ a: 4 b: 3 } Since this is only 2 data points, a Pearson correlation would always be 1 (a straight line or perfect correlation). This obviously isn't what I want, so what value should I use instead? I could just throw away all instances like this (give a correlation of 0), but my data is really sparse right now and I don't want to lose anything. Is there any similarity score I could use that would fit in with the rest of my similarity scores (all Pearson)?

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  • R + Bioconductor : combining probesets in an ExpressionSet

    - by Mike Dewar
    Hi, First off, this may be the wrong Forum for this question, as it's pretty darn R+Bioconductor specific. Here's what I have: library('GEOquery') GDS = getGEO('GDS785') cd4T = GDS2eSet(GDS) cd4T <- cd4T[!fData(cd4T)$symbol == "",] Now cd4T is an ExpressionSet object which wraps a big matrix with 19794 rows (probesets) and 15 columns (samples). The final line gets rid of all probesets that do not have corresponding gene symbols. Now the trouble is that most genes in this set are assigned to more than one probeset. You can see this by doing gene_symbols = factor(fData(cd4T)$Gene.symbol) length(gene_symbols)-length(levels(gene_symbols)) [1] 6897 So only 6897 of my 19794 probesets have unique probeset - gene mappings. I'd like to somehow combine the expression levels of each probeset associated with each gene. I don't care much about the actual probe id for each probe. I'd like very much to end up with an ExpressionSet containing the merged information as all of my downstream analysis is designed to work with this class. I think I can write some code that will do this by hand, and make a new expression set from scratch. However, I'm assuming this can't be a new problem and that code exists to do it, using a statistically sound method to combine the gene expression levels. I'm guessing there's a proper name for this also but my googles aren't showing up much of use. Can anyone help?

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  • Rails undefined method 'generated_methods' for nil:NilClass

    - by mike
    Okay so I was just starting this rails app and generated my first model ruby script/generate model Grid req:string class:string ctitle:string credits:float grade:string pass:boolean created my table rake db:migrate (in C:/Users/Michael/InstantRails/rails_apps/studentGrid) == CreateGrids: migrating ==================================================== -- create_table(:grids) - 0.0150s == CreateGrids: migrated (0.0150s) =========================================== and went to the console to add some data to my table Grid = Grid(id: integer, req: string, class: string, ctitle: string, credits: float, grade: string, pass: boolean, created_at: datetime, updated_at: datetime) Grid.create(:req="Math Elective", :class="Math 111", :ctitle="Calculus I", :credits=3.0) Pretty standard I thought, but then I get this error and I don't understand why NoMethodError: undefined method 'generated_methods' for nil:NilClass from C:/Users/Michael/InstantRails/ruby/lib/ruby/gems/1.8/gems/activesup port-2.3.5/lib/active_support/whiny_nil.rb:52:inmethod_missing' from C:/Users/Michael/InstantRails/ruby/lib/ruby/gems/1.8/gems/activerec ord-2.3.5/lib/active_record/attribute_methods.rb:352:in respond_to?' from C:/Users/Michael/InstantRails/ruby/lib/ruby/gems/1.8/gems/activerec ord-2.3.5/lib/active_record/base.rb:2746:inattributes=' from C:/Users/Michael/InstantRails/ruby/lib/ruby/gems/1.8/gems/activerec ord-2.3.5/lib/active_record/base.rb:2742:in each' from C:/Users/Michael/InstantRails/ruby/lib/ruby/gems/1.8/gems/activerec ord-2.3.5/lib/active_record/base.rb:2742:inattributes=' from C:/Users/Michael/InstantRails/ruby/lib/ruby/gems/1.8/gems/activerec ord-2.3.5/lib/active_record/base.rb:2438:in initialize' from C:/Users/Michael/InstantRails/ruby/lib/ruby/gems/1.8/gems/activerec ord-2.3.5/lib/active_record/base.rb:721:innew' from C:/Users/Michael/InstantRails/ruby/lib/ruby/gems/1.8/gems/activerec ord-2.3.5/lib/active_record/base.rb:721:in `create' from (irb):2 from :0

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  • How do I get apache RewriteRule working correctly for a subdomain?

    - by mike
    I just setup a subdomain with the following RewriteCond: RewriteCond $1 !^search.php$ RewriteCond %{REQUEST_FILENAME} !-f RewriteRule ^/?([^/]+)$ search.php?q=$1 [L,NS] I'm using the same rewrite condition on my main domain and it works perfectly. However, when I set it up on the subdomain, it simply outputs "index.php" when going to http://sub.domain.com Every page on the subdomain outputs the page name in the body instead of processing the code, except for the search page, which appears to be working correctly. What can I do to correct this issue?

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  • In Perl, is a while loop generally faster than a for loop?

    - by Mike
    I've done a small experiment as will be shown below and it looks like that a while loop is faster than a for loop in Perl. But since the experiment was rather crude, and the subject might be a lot more complicated than it seems, I'd like to hear what you have to say about this. Thanks as always for any comments/suggestions :) In the following two small scripts, I've tried while and for loops separately to calcaulte the factorial of 100,000. The one that has the while loop took 57 minutes 17 seconds to finish while the for loop equivalent took 1 hour 7 minutes 54 seconds. Script that has while loop: use strict; use warnings; use bigint; my $now = time; my $n =shift; my $s=1; while(1){ $s *=$n; $n--; last if $n==2; } print $s*$n; $now = time - $now; printf("\n\nTotal running time: %02d:%02d:%02d\n\n", int($now / 3600), int(($now % 3600) / 60), int($now % 60)); Script that has for loop: use strict; use warnings; use bigint; my $now = time; my $n =shift; my $s=1; for (my $i=2; $i<=$n;$i++) { $s = $s*$i; } print $s; $now = time - $now; printf("\n\nTotal running time: %02d:%02d:%02d\n\n", int($now / 3600), int(($now % 3600) / 60), int($now % 60));

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  • Maddening Linked List problem

    - by Mike
    This has been plaguing me for weeks. It's something really simple, I know it. Every time I print a singly linked list, it prints an address at the end of the list. #include <iostream> using namespace std; struct node { int info; node *link; }; node *before(node *head); node *after(node *head); void middle(node *head, node *ptr); void reversep(node *head, node *ptr); node *head, *ptr, *newnode; int main() { head = NULL; ptr = NULL; newnode = new node; head = newnode; for(int c1=1;c1<11;c1++) { newnode->info = c1; ptr = newnode; newnode = new node; ptr->link = newnode; ptr = ptr->link; } ptr->link=NULL; head = before(head); head = after(head); middle(head, ptr); //reversep(head, ptr); ptr = head; cout<<ptr->info<<endl; while(ptr->link!=NULL) { ptr=ptr->link; cout<<ptr->info<<endl; } system("Pause"); return 0; } node *before(node *head) { node *befnode; befnode = new node; cout<<"What should go before the list?"<<endl; cin>>befnode->info; befnode->link = head; head = befnode; return head; } node *after(node *head) { node *afnode, *ptr2; afnode = new node; ptr2 = head; cout<<"What should go after the list?"<<endl; cin>>afnode->info; ptr2 = afnode; afnode->link=NULL; ptr2 = head; return ptr2; } void middle(node *head, node *ptr) { int c1 = 0, c2 = 0; node *temp, *midnode; ptr = head; while(ptr->link->link!=NULL) { ptr=ptr->link; c1++; } c1/=2; c1-=1; ptr = head; while(c2<c1) { ptr=ptr->link; c2++; } midnode = new node; cout<<"What should go in the middle of the list?"<<endl; cin>>midnode->info; cout<<endl; temp=ptr->link; ptr->link=midnode; midnode->link=temp; } void reversep(node *head, node *ptr) { node *last, *ptr2; ptr=head; ptr2=head; while(ptr->link!=NULL) ptr = ptr->link; last = ptr; cout<<last->info; while(ptr!=head) { while(ptr2->link!=ptr) ptr2=ptr2->link; ptr = ptr2; cout<<ptr->info; } } I'll admit that this is class work, but even the professor can't figure it out, and says that its probably something insignificant that we're overlooking, but I can't put my mind to rest until I find out what it is.

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  • How do you debug a windows service that is being installed?

    - by Mike Pateras
    I know how to attach a debugger to a windows service, but I can't seem to get attached to one that's being installed and started by a windows installer. I've tried: Setting a Thread.Sleep(TimeSpan.FromSeconds(30)); at the beginning of the on-start, but when I try to attach in Visual Studio, the name of the service does not appear as an option. This normally works, the service's name shows up in the list, but when using the installer it does not. Setting a Debugger.Break and Debugger.Launch. Neither really do anything. What can I do to debug my service?

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  • Cocoa - array not sorting?

    - by Mike
    I have this set NSMutableSet *mySet = [NSMutableSet setWithObjects: @"2", @"8", @"7", @"0", @"3", nil]; I copy the set to an array and sort it using NSArray *sortedArray = [[mySet allObjects] sortedArrayUsingSelector:@selector(compare:)]; The resulting array is in exactly the same order as the set and is not being sorted. Why? thanks for any help. EDIT: CORRECING A TYPO.

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  • MYSQL - datetime to seconds

    - by Mike
    Hello, I wasn't able to find out (googling, reading mysql reference manual) how to get value of DATETIME in seconds in MySQL. I dont mean to extract seconds from datetime, but to convert it into seconds. Thanx

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  • Windows code pages, what are they?

    - by Mike D
    I'm trying to gain a basic understanding of what is meant by a Windows code page. I kind of get the feeling it's a translation between a given 8 bit value and some 'abstraction' for a given character graphic. I made the following experiment. I created a "" character literal with two versions of the letter u with an umlaut. One created using the ALT 129 (uses code page 437) value and one using the ALT 0252 (uses code page 1252) value. When I examined the literal both characters had the value 252. Is 252 the universal 8 bit abstraction for u with an umlaut? Is it the Unicode value? Aside from keyboard input are there any library routines or system calls that use code pages? For example is there a function to translate a string using a given code table (as above for the ALT 129 value)?

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  • cocoa - making a class like UIButton

    - by Mike
    For some reason that will take too much time to explain, I have to create a UIImageView based class that has some properties of a button. Imagine a class like the UISwitch (no I cannot base my class on the UISwitch) with two states, on and off. WHen the user selects one state, it runs a method like a button that was clicked and the method receives the sender id. I have already the class more or less working. The class is based on UIImageView. I am having difficulties to understand the following. WHen I create a new button I have a line that is like [myButton addTarget:self action:NSSelectorFromString(myMethod) forControlEvents:UIControlEventTouchUpInside]; This line defines a target and an action to run when the button is triggered. I my case I would need something like [myObject addTarget:self action:myMethod ifState:1] //or another thing ifState:2 I have no idea what kind of code I should put on the class to make this work. Remember that as a button the class should send the "sender" information to identify the object which triggered the action... Can you guys, transcendental gurus help? thanks.

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  • Python SQLite FTS3 alternatives?

    - by Mike Cialowicz
    Are there any good alternatives to SQLite + FTS3 for python? I'm iterating over a series of text documents, and would like to categorize them according to some text queries. For example, I might want to know if a document mentions the words "rating" or "upgraded" within three words of "buy." The FTS3 syntax for this query is the following: (rating OR upgraded) NEAR/3 buy That's all well and good, but if I use FTS3, this operation seems rather expensive. The process goes something like this: # create an SQLite3 db in memory conn = sqlite3.connect(':memory:') c = conn.cursor() c.execute('CREATE VIRTUAL TABLE fts USING FTS3(content TEXT)') conn.commit() Then, for each document, do something like this: #insert the document text into the fts table, so I can run a query c.execute('insert into fts(content) values (?)', content) conn.commit() # execute my FTS query here, look at the results, etc # remove the document text from the fts table before working on the next document c.execute('delete from fts') conn.commit() This seems rather expensive to me. The other problem I have with SQLite FTS is that it doesn't appear to work with Python 2.5.4. The 'CREATE VIRTUAL TABLE' syntax is unrecognized. This means that I'd have to upgrade to Python 2.6, which means re-testing numerous existing scripts and programs to make sure they work under 2.6. Is there a better way? Perhaps a different library? Something faster? Thank you.

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  • Spring Security: Authentication returns null

    - by Mike
    Hi! I implemented FilterInvocationSecurityMetadataSource. in getAttribute, i am trying to extract the Authentication object to achieve the user and get his allowed views from the database:Object principal = SecurityContextHolder.getContext().getAuthentication().getPrincipal(); but the authentication is null! why? how can i achieve it?

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  • Eclipse code template to insert a bookmark?

    - by Mike
    Eclipse has a nifty feature which allows you to define "templates" for code. I have created one to automatically put in a println and add a "TODO" comment. I'd like for this to also add a bookmark so I can easily find it again. (The codebase I am working with makes it unfeasible to use just the Task List to find what I need to do since there are a lot of TODOs laying around.) My current template is simply System.out.println("don't commit me!"); //TODO: fix this ${cursor}.

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  • NSMutableUrlRequest eats plus signs

    - by Mike
    I create NSMutableUrlRequest for sending data to server, add all necessary fields to it and then add the string for sending like this: [theRequest setHTTPBody:[postString dataUsingEncoding: NSUTF8StringEncoding]]; postString is a usual NSString. The problem is, when I receive this request at the server, all the plus (+) signs disappear from the http body. So if I had "abcde+fghj" on iPhone, I get "abcde fghj" on the server". Can this be some encoding problem from using dataUsingEncoding: NSUTF8StringEncoding? Or some NSMutableUrlRequest stripping feature? What can I do to make it stop stripping plus signs? I need to receive UTF8 strings at the server side.

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  • How can I set up .Net unhanlded exception handling in a windows service?

    - by Mike Pateras
    protected override void OnStart(string[] args) { AppDomain.CurrentDomain.UnhandledException += new UnhandledExceptionEventHandler(CurrentDomain_UnhandledException); Thread.Sleep(10000); throw new Exception(); } void CurrentDomain_UnhandledException(object sender, UnhandledExceptionEventArgs e) { } I attached a debugger to the above code in my windows service, setting a breakpoint in CurrentDomain_UnhandledException, but it was never hit. The exception pops up saying that it is unhandled, and then the service stops. I even tried putting some code in the event handler, in case it was getting optimized away. Is this not the proper way to set up unhandled exception handling in a windows service?

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  • How do I convert integers to characters in C#?

    - by Mike Webb
    I am trying to convert an index of 1 to 27 into the corresponding uppercase letter. I know that in C++ I could type this: char letter = 'A' + (char)(myIndex % 27); This same code does not work in C#. How can I accomplish this task in C#? EDIT: I'd rather not have to encode an enum or switch statement for this if there is a better mathematical solution like the one above.

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  • How to add custom header to ASMX web service call using jquery?

    - by Mike
    I have a web service with the following contract: POST /Service/service.asmx HTTP/1.1 Host: xxx.xxx.xxx Content-Type: text/xml; charset=utf-8 Content-Length: length SOAPAction: "xxx.xxx.xxx/Service/Method" <?xml version="1.0" encoding="utf-8"?> <soap:Envelope xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:soap="http://schemas.xmlsoap.org/soap/envelope/"> <soap:Header> <Request xmlns="xxx.xxx.xxx/Service/"> <transactiontype>string</transactiontype> <username>string</username> <password>string</password> </Request> </soap:Header> <soap:Body> <Method xmlns="xxx.xxx.xxx/Service/"> <xml>xml</xml> </Method> </soap:Body> </soap:Envelope> And I am trying to call the service using jquery. This is my code: $.ajax({ url: serverUrl + 'Method', type: "POST", dataType: "xml", data: { xml: "xml" }, beforeSend: function (req) { req.setRequestHeader('Header', '<Request xmlns="xxx.xxx.xxx/Service/">' +'<transactiontype>4</transactiontype>' +'<agencyName>name</agencyName>' +'<username>user</username>' +'<password>pass</password>' +'</Request>'); }, success: function (data) { alert(data.text); }, error: function (request, status, errorThrown) { alert(status); } }); However, the header content is not passed to the web service? How would I go about passing the header credentials to my web service call?

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  • How to test a lamda expression var query result is null?

    - by mike
    var query = from emp in dbEmp.Employees join dept in dbEmp.Departments on emp.DeptID equals dept.DeptID where dept.DepartmentName.Contains(this.TextBox1.Text) select new { EmpID = emp.EmpID, EmpName = emp.EmpName, Age = emp.Age, Address = emp.Address, DeptName = dept.DepartmentName }; if (query==null) Label1.Text = "no results match your search"; GridView1.DataSource = query; GridView1.DataBind(); Everything works in the right way, but the label doesn't show the message when query result returns null. The label can show without condition(querry==null). So how to test if a var query result returns nothing? Thanks

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  • how to match a regulas expresion like (%i1) in python pexpect

    - by mike
    I want to use maxima from python using pexpect, whenever maxima starts it will print a bunch of stuff of this form: $ maxima Maxima 5.27.0 http://maxima.sourceforge.net using Lisp SBCL 1.0.57-1.fc17 Distributed under the GNU Public License. See the file COPYING. Dedicated to the memory of William Schelter. The function bug_report() provides bug reporting information. (%i1) i would like to start up pexpect like so: import pexpect cmd = 'maxima' child = pexpect.spawn(cmd) child.expect (' match all that stuff up to and including (%i1)') child.sendline ('integrate(sin(x),x)') chil.expect( match (%o1 ) ) print child.before how do i match the starting banner up to the prompt (%i1)? and so on, also maxima increments the (%i1)'s by one as the session goes along, so the next expect would be: child.expect ('match (%i2)') child.sendline ('integrate(sin(x),x)') chil.expect( match (%o2 ) ) print child.before how do i match the (incrementing) integers?

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  • T4MVC adding current page controller to action link

    - by Mike Flynn
    I have the following ActionLink that sits in the home page on the register controller (Index.cshtml) @Html.ActionLink("terms of service", Url.Action(MVC.Home.Terms()), null, new { target="_blank" }) Generating the following URL. Why is "register" being added to it? It's as if the link within the Register page which has it's own controller is preappending the register controller to any link in that view? http://localhost/register/terms-of-service routes.MapRoute( "Terms", "terms-of-service", new { controller = "Home", action = "Terms" } ); public partial class HomeController : SiteController { public virtual ActionResult Terms() { return View(new SiteViewModel()); }

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  • iphlpapi / ifdef.h

    - by Mike D
    I'm trying to use iphlpapi (GetAdapterInfo) and am having trouble compiling the code. I have iphlpapi.h from SDK 7 and have added the appropriate path to the include files in visual studio. I get the following error... c:\program files\microsoft sdks\windows\v7.0\include\ifdef.h(154) : error C2146: syntax error : missing ';' before identifier 'NET_IFTYPE' The lines in ifdef where this occurs are shown below. typedef NET_LUID IF_LUID, *PIF_LUID; typedef ULONG NET_IFINDEX, *PNET_IFINDEX; // Interface Index (ifIndex) typedef UINT16 NET_IFTYPE, *PNET_IFTYPE; // Interface Type (IANA ifType)

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