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  • XML File as Excel file.

    - by FrustratedWithFormsDesigner
    I have a number of reports that I run against my database that need to eventually go to the end-users as Excel spreadsheets. Initially, I was creating text reports, but the steps to convert the text to a spreadsheet were a bit cumbersome. There were too many steps to import text to the spreadsheet, and multi-line text rows were imported as individual rows in Excel (which was incorrect). Currently, I am generating simple XML saving the file with an ".xls" extension. This works better, but there is still the problem of Excel prompting the user with an XML import dialogue every time they open the file, and then having to save a new file if they add notes or change the layout to the file (which they almost certainly will be doing). Sample "xls" file: <?xml version="1.0" standalone="yes"?> <report_rows> <row> <NAME>Test Data</NAME> <COUNT>345</COUNT> </row> <!-- many more row elements... --> </report_rows> Is there any way to add markup to the file to hint to Excel how it should import and handle the file? Ideally, the end user should be able to open and save the file like any othe spreadsheet they create directly from Excel. Is this even possible? UPDATE: We are running Office 2003 here. UPDATE: The XML is generated from a sqlplus script, no option to use C#/.NET here.

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  • database design - empty fields

    - by imanc
    Hey, I am currently debating an issue with a guy on my dev team. He believes that empty fields are bad news. For instance, if we have a customer details table that stores data for customers from different countries, and each country has a slightly different address configuration - plus 1-2 extra fields, e.g. French customer details may also store details for entry code, and floor/level plus title fields (madamme, etc.). South Africa would have a security number. And so on. Given that we're talking about minor variances my idea is to put all of the fields into the table and use what is needed on each form. My colleague believes we should have a separate table with extra data. E.g. customer_info_fr. But this seams to totally defeat the purpose of a combined table in the first place. His argument is that empty fields / columns is bad - but I'm struggling to find justification in terms of database design principles for or against this argument and preferred solutions. Another option is a separate mini EAV table that stores extra data with parent_id, key, val fields. Or to serialise extra data into an extra_data column in the main customer_data table. I think I am confused because what I'm discussing is not covered by 3NF which is what I would typically use as a reference for how to structure data. So my question specifically: - if you have slight variances in data for each record (1-2 different fields for instance) what is the best way to proceed?

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  • How do I grep for entire, possibly wrapped, lines of code?

    - by NXT
    When searching code for strings, I constantly run into the problem that I get meaningless, context-less results. For example, if a function call is split across 3 lines, and I search for the name of a parameter, I get the parameter on a line by itself and not the name of the function. For example, in a file containing ... someFunctionCall ("test", MY_CONSTANT, (some *really) - long / expression); grepping for MY_CONSTANT would return a line that looked like this: MY_CONSTANT, Likewise, in a comment block: ///////////////////////////////////////// // FIXMESOON, do..while is the wrong choice here, because // it makes the wrong thing happen ///////////////////////////////////////// Grepping for FIXMESOON gives the very frustrating answer: // FIXMESOON, do..while is the wrong choice here, because When there are thousands of hits, single line results are a little meaningless. What I would like to do is have grep be aware of the start and stop points of source code lines, something as simple as having it consider ";" as the line separator would be a good start. Bonus points if you can make it return the entire comment block if the hit is inside a comment. I know you can't do this with grep alone. I also am aware of the option to have grep return a certain number of lines of content. Any suggestions on how to accomplish under Linux? FYI my preferred languages are C and Perl. I'm sure I could write something, but I know that somebody must have already done this. Thanks!

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  • Can one connection get details of another? Or, how can I get the most detailed pending transaction

    - by bob-the-destroyer
    Is there a Mysql statement which provides full details of any other open connection or user? For this particular case, on myisam tables specifically. Looking at Mysql's SHOW TABLE STATUS documentation, it's missing some very important information for my purpose. For example: remote odbc connection one is inserting several thousand records, which due to a slow connection speed can take up to an hour. Tcp connection two, using PHP on the server's localhost, is running select queries with aggregate functions on that data. Before allowing connection two to run those queries, I'd like connection two to first check to make sure there's no pending inserts on any other connection on those specific tables so it can instead wait until all data is available. If the table is currently being written to, I'd like to spit back to the user of connection two an approximation of how much longer to wait based on the number of pending inserts. Ideally by table, I'd like to get back using a query the timestamp when connection one began the write, total inserts left to be done, and total inserts already completed. Instead of insert counts, even knowing number of bytes written and left to write would work just fine here. Obviously since connection two is a tcp connection via a PHP script, all I can really use in that script is some sort of query. I suppose if I have to, since it is on localhost, I can exec() it if the only way is by a mysql command line option that outputs this info, but I'd rather not. I suppose I could simply update a custom-made transaction log before and after this massive insert task which the PHP script can check, but hopefully there's already a built-in Mysql feature I can take advantage of.

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  • Mulltiple configurations in Qt

    - by user360607
    Hi all! I'm new to Qt Creator and I have several questions regarding multiple build configurations. A side note: I have the QtCreator 1.3.1 installed on my Linux machine. I need to have two configurations in my Qt Creator project. The thing is that these aren't simply debug and release but are based on the target architecture - x86 or x64. I came across http://stackoverflow.com/questions/2259192/building-multiple-targets-in-qt-qmake and from that I went trying something like: Conf_x86 { TARGET = MyApp_x86 } Conf_x64 { TARGET = MyApp_x64 } This way however I don't seems to be able to use the Qt Creator IDE to build each of these separately (Build All, Rebuild All, etc. options from the IDE menu). Is there a way to achieve this - may be even show Conf_x86 and Conf_x64 as new build configurations in Qt Creator? One other thing the Qt I have is 64 bit so by default the target built using Qt Creator IDE will also be 64 bit. I noticed that the effective qmake call in the build step includes the following option '-spec linux-g++-64'. I also noticed that should I add '-spec linux-g++-32' in 'Additional arguments' it would override '-spec linux-g++-64' and the resulting target will be 32 bit. How can I achieve this by simply editing the contents of the .pro file? I saw that all these changes are initially saved in the .pro.user file but does doesn't suit me at all. I need to be able to make these configurations from the .pro file if possible. Any help will be appreciated. 10x in advance!

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  • Iphone - cannot grant permission for publishing on a Facebook page that i administer

    - by user323817
    I want to open a dialog on the IPhone so a user can grant my application permission to post on a Facebook page that the user administers. Following the docs, I can grant permissions for the user's stream and I can even post on a page that he is a fan of. However, the post on the page is listed as from the username, not on behalf of the page itself, even though he is an administrator of the page. According to the Prompting for Permissions section at: http://wiki.developers.facebook.com/index.php/Authorization_and_Authentication_for_Desktop_Applications I should be able to create a prompt on the IPhone for granting permission to publish_stream on a Facebook page that he administers. The sample url they give for a web "popup" dialog is: http://www.facebook.com/connect/prompt_permissions.php?api_key=YOURAPIKEY&v=1.0&next=http://www.facebook.com/connect/login_success.html?xxRESULTTOKENxx&display=popup&ext_perm=read_stream,publish_stream&enable_profile_selector=1&profile_selector_ids=1234%2C5454 This works as expected and a drop down of the pages is displayed. However, since my application is on the IPhone, I change the display=popup to display=touch. This does not seem to work and I've tried fiddling with the parameters several ways but the drop down never comes up. Anyone find a way around this? The popup option doesn't seem to work since I get an error trying to display it.

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  • Software usage analytics in C#

    - by TiernanO
    I have a project i am working on currently and would like to implement some sort of software tracking in the code. ideally, stuff like how often its launched. how long it runs for, feature tracking, etc. I already use Exceptioneer for unhandled exceptions, but would like something similar for usage tracking. this data should all be anonymous and ideally run as a service by someone else. and i would like to give the users the option to turn it off, if they so wish to... So, is this something i should implement myself, or are there third parties out there that do this sort of things? i know it might be a sticky area, but i have seen stats about iPhone app usage. they do it, so why cant we? (if the user agrees, of course) [Update] Based on the comments, i should have been more clear. this is a Winforms .NET 4. application, though i am thinking of updating it later with WCF. i would only be tracking my own application, though i would also want to know minor information about environment (Windows OS Version, SP, maybe proc and ram...)

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  • SQL Group by Minute- Expanded

    - by Barnie
    I am working on something similar to this post here: TS SQL - group by minute However mine is pulling from an message queue, and I need to see an accurate count of the amount of traffic the Message Queue is creating/ sending, and at what time Select * From MessageQueue mq My expanded version of this though is the following: A) User defines a start time and an end time (Easy enough using Declare's @StartTime and @EndTime B) Give the user the option of choosing the "grouping". Will it be broken out by 1 minutes, 5 minutes, 15 minutes, or 30 minutes (Max). (I had thought to do this with a CASE statement, but my test problems fall apart on me.) C) Display the data to accurately show a count of what happened during the interval (Grouping) selected. This is where I am at so far SQL Blob: DECLARE @StartTime datetime DECLARE @EndTime datetime SELECT DATEPART(n, mq.cre_date)/5 as Time --Trying to just sort by 5 minute intervals ,CONVERT(VARCHAR(10),mq.Cre_Date,101) ,COUNT(*) as results FROM dbo.MessageQueue mq WHERE mq.cre_date BETWEEN @StartDate AND @EndDate GROUP BY DATEPART(n, mq.cre_date)/5 --Trying to just sort by 5 minute intervals , eq.Cre_Date This is the output I would like to achieve: [Time] [Date] [Message Count] 1300 06/26/2012 5 1305 06/26/2012 1 1310 06/26/2012 100

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  • Eclipse > Javascript > Code highlighting not working with Object Notation

    - by Redsandro
    I am using Eclipse Helios with PDT, and when I am editing JavaScript files with the default JavaScript Editor (JSDT), code highlighting (Mark Occurrences) is not working for half of the code, for example JSON-style (or Object Literal if you will) declarations. Little example: Foo = {}; Foo.Bar = Foo.Bar || {}; Foo.Bar = { bar: function(str) { alert(str) }, baz: function(str) { this.bar(str); // This bar *is* highlighted though } }; Foo.Bar.baz('text'); No Bar, bar or baz is highlighted. For now, I humbly edit the JavaScript part of projects in Notepad++ because it just highlights every occurrence of whatever is currently selected. Is there a common practice for Eclipse JavaScript developers to get code highlighting work correctly, using the popular Object Literal notation? An option or update I missed? -update- I have found that code highlighting depends on the code being properly outlined. Altough commonly used, Object Literal outlining still seems rare in javascript editors. the Spket Javascript Editor does partial Object Literal outlining, and the Aptana Javascript Editor does full Object Literal outlining. But both loses other important functionality. A quest for the editor with the least loss of functionality is currently in progress in this question.

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  • How does one force construction of a global object in a statically linked library? [MSVC9]

    - by Peter C O Johansson
    I have a global list of function pointers. This list should be populated at startup. Order is not important and there are no dependencies that would complicate static initialization. To facilitate this, I've written a class that adds a single entry to this list in its constructor, and scatter global instances of this class via a macro where necessary. One of the primary goals of this approach is to remove the need for explicitly referencing every instance of this class externally, instead allowing each file that needs to register something in the list to do it independently. Nice and clean. However, when placing these objects in a static library, the linker discards (or rather never links in) these units because no code in them is explicitly referenced. Explicitly referencing symbols in the compilation units would be counterproductive, directly contradicting one of the main goals of the approach. For the same reason, /INCLUDE is not an acceptable option, and /OPT:NOREF is not actually related to this problem. Metrowerks has a __declspec directive for it, GCC has -force_load, but I cannot find any equivalent for MSVC.

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  • Gridview column right click issue

    - by peter
    I have grid named 'GridView1' and displaying columns like this <asp:GridView ID="GridView1" OnRowCommand="ScheduleGridView_RowCommand" runat="server" AutoGenerateColumns="False" Height="60px" Style="text-align: center" Width="869px" EnableViewState="False"> <Columns> <asp:BoundField HeaderText="Topic" DataField="Topic" /> <asp:BoundField DataField="Moderator" HeaderText="Moderator" /> <asp:BoundField DataField="Expert" HeaderText="Expert" /> <asp:BoundField DataField="StartTime" HeaderText="Start" > <HeaderStyle Width="175px" /> </asp:BoundField> <asp:BoundField DataField="EndTime" HeaderText="End" > <HeaderStyle Width="175px" /> </asp:BoundField> <asp:TemplateField HeaderText="Join" ShowHeader="False"> <ItemTemplate> <asp:Button ID="JoinBT" runat="server" CommandArgument="<%# Container.DataItemIndex %>" CommandName="Join" Text="Join" Width="52px" /> </ItemTemplate> <HeaderStyle Height="15px" /> </asp:TemplateField> </Columns> </asp:GridView> Here what is my requirement is whenever we right click on each row in gridview ,it should display three option join meeting(if we click it will go to meeting.aspx),,view details(will go to detail.aspx),,Subscribe(subscribe.aspx) just like when we click right any where we can see view,sortby,refresh like that..Do we need to implement javascript here

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  • How to Store and Retrieve Images Using SQL Server (Server Management Studio)

    - by Joe Majewski
    I am having difficulties when trying to insert files into a SQL Server database. I'll try to break this down as best as I can: What data type should I be using to store image files (jpeg/png/gif/etc)? Right now my table is using the image data type, but I am curious if varbinary would be a better option. How would I go about inserting the image into the database? Does Microsoft SQL Server Management Studio have any built in functions that allow insertions of files into tables? If so, how is that done? Also, how could this be done through the use of an HTML form with PHP handling the input data and placing it into the table? How would I fetch the image from the table and display it on the page? I understand how to SELECT the cell's contents, but how would I go about translating that into a picture. Would I have to have a header(Content type: image/jpeg)? I have no problem doing any of these things with MySQL, but the SQL Server environment is still new to me, and I am working on a project for my job that requires the use of stored procedures to grab various data. Any and all help is appreciated.

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  • Convert enumeration to string

    - by emptyheaded
    I am trying to build a function that converts an item from an enum to its corresponding string. The enums I use are fairly long, so I didn't want to use a switch-case. I found a method using boost::unordered_map very convenient, but I don't know how to make a default return (when there is no item matching the enum). const boost::unordered_map<enum_type, const std::string> enumToString = boost::assign::map_list_of (data_1, "data_1") (data_2, "data_2"); I tried to create an additional function: std::string convert(enum_type entry) { if (enumToString.find(entry)) // not sure what test to place here, return enumToString.at(entry); //because the find method returns an iter else return "invalid_value"; } I even tried something exceedingly wrong: std::string convert(enum_type entry) { try{ return enumToString.at(entry); } catch(...){ return "invalid_value"; } } Result: evil "Debug" runtime error. Can somebody give me a suggestion on how to either 1) find an easier method to convert enum to a string with the same name as the enum item 2) find a way to use already built boost methods to get a default value from a hash map (best option) 3) find what to place in the test to use a function that returns either the pair of the key-value, or a different string if the key is not found in the map. Thank you very much.

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  • iPhone inputting NSUserDefaults into a UITextField

    - by Rob
    I am writing a program where I where the first time a user runs it - they will have to fill out about 10 different UITextFields. I am trying to save the fields so that on subsequent runs of the program that whatever they previously put will already be displayed in those UITextFields so the wont have to re-input it in - unless they want to edit something in which case they still have that option. I think that I have figured out a good way to save the strings using NSUserDefaults but now I am trying to figure out how to have those fields populate a UITextField - it doesnt seem as easy as if they were UILabels. This is the route I am attempting: // in the viewDidLoad portion. NSUserDefaults *userData = [NSUserDefaults standardUserDefaults]; //Hooks. NSString *placeHolderName = [userData stringForKey:@"name"]; txtName.text = @"%@", placeHolderName; When I do this, it simply displays the '%@' in the textfields. I want whatever variable being held by placeHolderName to be automatically put into that UITextField. Is this possible?

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  • MVVM: Do I need Inheritance with ViewModels A + B ?

    - by Lisa
    Hello guys my first post on SO because EE sucks in the meantime ;P I am using wpf and mvvm in my desktop application. Scenario: I have a calendar with week A and week B which are rotating by every X week depending on the user settings. But the UserControl "week B" is only visible when the user sets the option "rotating weeks"... The UserControl with week A has a DataGrid and for week B I want to use the same UserControl of course. What I want to achieve is that all data entered/choosen by the user in the Week A is saved/backed by a ViewModel A and Model C. When the user wants a rotating weekly calendar plan I need also a ViewModel B and again Model C. The reason why I need to know what data entered by the user belongs to week A or week B is because I have to write the entered data in a certain order into the database = db.Write(weekA),db.Write(weekB),db.Write(weekA),etc... I am unsure how a solution could look like... What would you do to identify a ViewModel A or B so you know the order of how to write the data in the proper order into database? Any other suggestions are also welcome of course, maybe I think in the wrong direction its late here :) I am new to mvvm so please be patient.

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  • File/Property rename problem in Visual Studio and Explorer

    - by user211377
    I am running Windows 7. In Visual Studio, if I try to rename a file by right-click/rename, it behaves as normal for a couple of seconds, then switches out of edit mode. A similar problem occurs when I try to change a property, for example the name of a control. When I click in the property value, I can start editing, but then it assumes the edit is complete, and if I continue typing it overwrites the text. It does this every couple of seconds, so, for example, if I want to name a control mnuFile, I might get mn, then uFi, then le. S, the control ends upgetting called whatever I typed in the last 2-3 characters. I have the same problem with file rename in Explorer. Looks to me as though some timeout is kicking in and terminating the edit. Well, I was going to try a 'Repair install', but that's not an option in Windows 7! So, I went through the re-install, up to the point where I thought is was going to trash my install, and then cancelled it! By some miracle, that has fixed the problem!#Thanks for the advice about ShellExView, I'll try that next time it happens. Thanks for the answers guys! In my view it is more a Visual Studio issue, since it affects both file renames and properties in VS. In Explorer it only affects file rename, which is (just slightly) less annoying!

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  • Parsing large txt files in ruby taking a lot of time?

    - by hershey92
    below is the code to download a txt file from internet approx 9000 lines and populate the database, I have tried a lot but it takes a lot of time more than 7 minutes. I am using win 7 64 bit and ruby 1.9.3. Is there a way to do it faster ?? require 'open-uri' require 'dbi' dbh = DBI.connect("DBI:Mysql:mfmodel:localhost","root","") #file = open('http://www.amfiindia.com/spages/NAV0.txt') file = File.open('test.txt','r') lines = file.lines 2.times { lines.next } curSubType = '' curType = '' curCompName = '' lines.each do |line| line.strip! if line[-1] == ')' curType,curSubType = line.split('(') curSubType.chop! elsif line[-4..-1] == 'Fund' curCompName = line.split(" Mutual Fund")[0] elsif line == '' next else sCode,isin_div,isin_re,sName,nav,rePrice,salePrice,date = line.split(';') sCode = Integer(sCode) sth = dbh.prepare "call mfmodel.populate(?,?,?,?,?,?,?)" sth.execute curCompName,curSubType,curType,sCode,isin_div,isin_re,sName end end dbh.do "commit" dbh.disconnect file.close 106799;-;-;HDFC ARBITRAGE FUND RETAIL PLAN DIVIDEND OPTION;10.352;10.3;10.352;29-Jun-2012 This is the format of data to be inserted in the table. Now there are 8000 such lines and how can I do an insert by combining all that and call the procedure just once. Also, does mysql support arrays and iteration to do such a thing inside the routine. Please give your suggestions.Thanks.

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  • In C/C++ mode in Emacs, change face of code in #if 0...#endif block to comment face

    - by pogopop77
    I'm trying to add functionality found in some other code editors to my Emacs configuration, whereby C/C++ code within #if 0...#endif blocks is automatically set to the comment face/font. Based on my testing, cpp-highlight-mode does something like what I want, but requires user action. It seems like tying into the font-lock functionality is the correct option to make the behavior automatic. I have successfully followed examples in the GNU documentation to change the face of single-line regular expressions. For example: (add-hook 'c-mode-common-hook (lambda () (font-lock-add-keywords nil '(("\\<\\(FIXME\\|TODO\\|HACK\\|fixme\\|todo\\|hack\\)" 1 font-lock-warning-face t))))) works fine to highlight debug related keywords anywhere in a file. However, I am having problems matching #if 0...#endif as a multiline regular expression. I found some useful information in this post (How to compose region like ""), that suggested that Emacs must be told specifically to allow for multiline matches. But this code: (add-hook 'c-mode-common-hook (lambda () '(progn (setq font-lock-multiline t) (font-lock-add-keywords nil '(("#if 0\\(.\\|\n\\)*?#endif" 1 font-lock-comment-face t)))))) still does not work for me. Perhaps my regular expression is wrong (though it appears to work using M-x re-builder), I've messed up my syntax, or I'm following the wrong approach entirely. I'm using Aquamacs 2.1 (which is based on GNU Emacs 23.2.50.1) on OS X 10.6.5, if that makes a difference. Any assistance would be appreciated!

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  • Generated images fail to load in browser

    - by notJim
    I've got a page on a webapp that has about 13 images that are generated by my application, which is written in the Kohana PHP framework. The images are actually graphs. They are cached so they are only generated once, but the first time the user visits the page, and the images all have to be generated, about half of the images don't load in the browser. Once the page has been requested once and images are cached, they all load successfully. Doing some ad-hoc testing, if I load an individual image in the browser, it takes from 450-700 ms to load with an empty cache (I checked this using Google Chrome's resource tracking feature). For reference, it takes around 90-150 ms to load a cached image. Even if the image cache is empty, I have the data and some of the application's startup tasks cached, so that after the first request, none of that data needs to be fetched. My questions are: Why are the images failing to load? It seems like the browser just decides not to download the image after a certain point, rather than waiting for them all to finish loading. What can I do to get them to load the first time, with an empty cache? Obviously one option is to decrease the load times, and I could figure out how to do that by profiling the app, but are there other options? As I mentioned, the app is in the Kohana PHP framework, and it's running on Apache. As an aside, I've solved this problem for now by fetching the page as soon as the data is available (it comes from a batch process), so that the images are always cached by the time the user sees them. That feels like a kludgey solution to me, though, and I'm curious about what's actually going on.

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  • Can I share code & resources between Android projects without using a library?

    - by Tom
    The standard advice for sharing code & resources between Android projects is to use a library. Personally I find this works poorly if (a) the shared code changes a lot, or (b) your computer isn't fast enough. I also don't want to get into deploying multiple APK's, which seems to be necessary when I use dependent projects (i.e. Java Build Path, Projects Tab). On the other hand, sharing a folder of source code by using the Eclipse linked source feature works great (Java Build Path, Source tab, Link Source button), but for these two issues: 1) I can't use the same technique to share resources. I can create the link to the resources parent folder but then things get wonky and the shared resources don't get compiled (I'm using ADT 21). 2) So then I settle for copying the shared resources into each project, but this doesn't work because either. The shared code can't import the copy of its resources because it doesn't know the package name of the project that uses it. The solution I've been using is to access the resources dynamically, but that has become cumbersome as the number of resources grows. So, I need a solution to either (1) or (2), or I'll have to go back to a library project. (Or maybe there is another option I haven't thought of?)

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  • Using external SOAP service in Workflow service

    - by whirlwin
    I am using the .NET 4 framework and have made a WCF Workflow Service Application. I want to use a SOAP web service (.NET 3.5) I have running in another instance of VS. The only method that is exposed is the following: [WebMethod] public string Reverse(string input) { char[] chars = input.ToCharArray(); Array.Reverse(chars); return new string(chars); } I have used the following steps to add the service in my Workflow: Add Service Reference Provided the WSDL (the operation shows in the Operations box as expected) Clicked OK Build the solution to ensure that the service shows in my toolbox Drag the service from the toolbox into the workflow However, when I look at the properties of the service in the workflow, there is no way to specify the input argument or where to store the result of the invocation of the service. I only have the option of specifying some obscure parameters such as Body:InArgument<ReverseRequestBody and outBody:OutArgument<ReverseResponseBody (none of which are strings). Here is a screenshot depicting the properties of the service in the workflow: My question is therefore: Is it possible at all to use the SOAP service by specifying a string as the input argument (like it is meant to be used), and also assign the result to a workflow variable?

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  • TableTools only exporting single header row

    - by Rakeesh
    I am using the DataTable jquery plugin from: http://datatables.net/ I have a DataTable that has multi-row table header with colspan. Something like: <thead> <tr> <th>Level 1</th> <th colspan='2'>Level 1 - Item 1</th> <th colspan='2'>Level 1 - Item 2</th> </tr> <tr> <th>Level 2</th> <th>Level 2 - Item 1a</th> <th>Level 2 - Item 1b</th> <th>Level 2 - Item 2a</th> <th>Level 2 - Item 2b</th> </tr> </thead> However when I use the TableTools plugin to export then except for the "Print" option all the rest (Excel, CSV, Pdf etc) only has the "Level 2" header row and not the Level 1. Any suggestions on how to get it to export also Level 1?

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  • lapply slower than for-loop when used for a BiomaRt query. Is that expected?

    - by ptocquin
    I would like to query a database using BiomaRt package. I have loci and want to retrieve some related information, let say description. I first try to use lapply but was surprise by the time needed for the task to be performed. I thus tried a more basic for-loop and get a faster result. Is that expected or is something wrong with my code or with my understanding of apply ? I read other posts dealing with *apply vs for-loop performance (Here, for example) and I was aware that improved performance should not be expected but I don't understand why performance here is actually lower. Here is a reproducible example. 1) Loading the library and selecting the database : library("biomaRt") athaliana <- useMart("plants_mart_14") athaliana <- useDataset("athaliana_eg_gene",mart=athaliana) 2) Querying the database : loci <- c("at1g01300", "at1g01800", "at1g01900", "at1g02335", "at1g02790", "at1g03220", "at1g03230", "at1g04040", "at1g04110", "at1g05240" ) I create a function for the use in lapply : foo <- function(loci) { getBM("description","tair_locus",loci,athaliana) } When I use this function on the first element : > system.time(foo(cwp_loci[1])) utilisateur système écoulé 0.020 0.004 1.599 When I use lapply to retrieve the data for all values : > system.time(lapply(loci, foo)) utilisateur système écoulé 0.220 0.000 16.376 I then created a new function, adding a for-loop : foo2 <- function(loci) { for (i in loci) { getBM("description","tair_locus",loci[i],athaliana) } } Here is the result : > system.time(foo2(loci)) utilisateur système écoulé 0.204 0.004 10.919 Of course, this will be applied to a big list of loci, so the best performing option is needed. I thank you for assistance. EDIT Following recommendation of @MartinMorgan Simply passing the vector loci to getBM greatly improves the query efficiency. Simpler is better. > system.time(lapply(loci, foo)) utilisateur système écoulé 0.236 0.024 110.512 > system.time(foo2(loci)) utilisateur système écoulé 0.208 0.040 116.099 > system.time(foo(loci)) utilisateur système écoulé 0.028 0.000 6.193

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  • Efficient (basic) regular expression implementation for streaming data

    - by Brendan Dolan-Gavitt
    I'm looking for an implementation of regular expression matching that operates on a stream of data -- i.e., it has an API that allows a user to pass in one character at a time and report when a match is found on the stream of characters seen so far. Only very basic (classic) regular expressions are needed, so a DFA/NFA based implementation seems like it would be well-suited to the problem. Based on the fact that it's possible to do regular expression matching using a DFA/NFA in a single linear sweep, it seems like a streaming implementation should be possible. Requirements: The library should try to wait until the full string has been read before performing the match. The data I have really is streaming; there is no way to know how much data will arrive, it's not possible to seek forward or backward. Implementing specific stream matching for a couple special cases is not an option, as I don't know in advance what patterns a user might want to look for. For the curious, my use case is the following: I have a system which intercepts memory writes inside a full system emulator, and I would like to have a way to identify memory writes that match a regular expression (e.g., one could use this to find the point in the system where a URL is written to memory). I have found (links de-linkified because I don't have enough reputation): stackoverflow.com/questions/1962220/apply-a-regex-on-stream stackoverflow.com/questions/716927/applying-a-regular-expression-to-a-java-i-o-stream www.codeguru.com/csharp/csharp/cs_data/searching/article.php/c14689/Building-a-Regular-Expression-Stream-Search-with-the-NET-Framework.htm But all of these attempt to convert the stream to a string first and then use a stock regular expression library. Another thought I had was to modify the RE2 library, but according to the author it is architected around the assumption that the entire string is in memory at the same time. If nothing's available, then I can start down the unhappy path of reinventing this wheel to fit my own needs, but I'd really rather not if I can avoid it. Any help would be greatly appreciated!

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  • NHibernate / multiple sessions and nested objects

    - by bernhardrusch
    We are using NHibernate in a rich client application. It is a pretty open application (the user searches for a dataset or creates a new one, changes the data and saves the data set. We leave the session open, because sometimes we have to lazy load some properties of the object (nested object structure). This means one big problem if we leave the session open, the db (MySQL) closes the connection and we are not able to find this out and it throws an exception (socket communication error) when accessing the database (we are thinking about testing the db connection before accessing the object - but this is not really optimal neither, the other option would be to set back the timeout of the db connection , but this just doesn't seem to well). So - is it possible to reconnect the session to a new database connection ? Another problem is it possible to get an object from one session and then re-attach it to another session ? (I often hear that session.lock should work for this - but this doesn't work so well in our application - so I ended up getting a "fresh" object from the session and copy the data over manually - which is a little bit cumbersome) Any ideas for this ?

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